mRNA_L-elsbetiae_contig10852.784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10852.784.1
Unique NamemRNA_L-elsbetiae_contig10852.784.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10852.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10852contigL-elsbetiae_contig10852:1702..2027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815303.8737197-CDS-L-elsbetiae_contig10852:1701..20071622815303.8737197-CDS-L-elsbetiae_contig10852:1701..2007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10852 1702..2007 +
1691682827.2605286-CDS-L-elsbetiae_contig10852:1701..20071691682827.2605286-CDS-L-elsbetiae_contig10852:1701..2007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10852 1702..2007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815303.9461234-UTR-L-elsbetiae_contig10852:2007..20271622815303.9461234-UTR-L-elsbetiae_contig10852:2007..2027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10852 2008..2027 +
1691682827.2716846-UTR-L-elsbetiae_contig10852:2007..20271691682827.2716846-UTR-L-elsbetiae_contig10852:2007..2027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10852 2008..2027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10852.784.1prot_L-elsbetiae_contig10852.784.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10852 1702..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10852.784.1

>prot_L-elsbetiae_contig10852.784.1 ID=prot_L-elsbetiae_contig10852.784.1|Name=mRNA_L-elsbetiae_contig10852.784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MGACEFEAYIDQAQARRFIHSSSGSAWCWTDKWGGGDITAPVDGLVAYQR
SRLHGPLISTVVHYLSCCTLPRCFWGLAHERRCLPCSCQREAACMSNLHV
T*
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mRNA from alignment at L-elsbetiae_contig10852:1702..2027+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10852.784.1 ID=mRNA_L-elsbetiae_contig10852.784.1|Name=mRNA_L-elsbetiae_contig10852.784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig10852:1702..2027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGCATGTGAGTTTGAGGCATATATAGATCAAGCTCAAGCACGTCG
TTTCATCCACAGCAGTAGTGGAAGCGCGTGGTGTTGGACCGACAAATGGG
GTGGAGGAGATATCACAGCCCCCGTTGACGGCTTAGTAGCGTACCAAAGG
TCGAGGTTGCATGGACCGTTGATATCAACAGTGGTGCATTATCTCTCCTG
CTGCACGCTGCCTCGGTGTTTTTGGGGCCTCGCTCACGAACGGCGTTGTC
TGCCTTGCTCTTGCCAAAGGGAAGCAGCCTGCATGTCCAACCTACACGTG
ACCTGACAAGTTTTCTTTCCCAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10852:1702..2027+

>mRNA_L-elsbetiae_contig10852.784.1 ID=mRNA_L-elsbetiae_contig10852.784.1|Name=mRNA_L-elsbetiae_contig10852.784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig10852:1702..2027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGCATGTGAGTTTGAGGCATATATAGATCAAGCTCAAGCACGTCG
TTTCATCCACAGCAGTAGTGGAAGCGCGTGGTGTTGGACCGACAAATGGG
GTGGAGGAGATATCACAGCCCCCGTTGACGGCTTAGTAGCGTACCAAAGG
TCGAGGTTGCATGGACCGTTGATATCAACAGTGGTGCATTATCTCTCCTG
CTGCACGCTGCCTCGGTGTTTTTGGGGCCTCGCTCACGAACGGCGTTGTC
TGCCTTGCTCTTGCCAAAGGGAAGCAGCCTGCATGTCCAACCTACACGTG
ACCTGAATGGGTGCATGTGAGTTTGAGGCATATATAGATCAAGCTCAAGC
ACGTCGTTTCATCCACAGCAGTAGTGGAAGCGCGTGGTGTTGGACCGACA
AATGGGGTGGAGGAGATATCACAGCCCCCGTTGACGGCTTAGTAGCGTAC
CAAAGGTCGAGGTTGCATGGACCGTTGATATCAACAGTGGTGCATTATCT
CTCCTGCTGCACGCTGCCTCGGTGTTTTTGGGGCCTCGCTCACGAACGGC
GTTGTCTGCCTTGCTCTTGCCAAAGGGAAGCAGCCTGCATGTCCAACCTA
CACGTGACCTGA
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