mRNA_L-elsbetiae_contig1078.725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1078.725.1
Unique NamemRNA_L-elsbetiae_contig1078.725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1078.725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1078contigL-elsbetiae_contig1078:19836..20578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size743
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1078.725.1prot_L-elsbetiae_contig1078.725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1078 20069..20473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.6157591-UTR-L-elsbetiae_contig1078:19835..200681622815296.6157591-UTR-L-elsbetiae_contig1078:19835..20068Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 19836..20068 +
1691682823.0219176-UTR-L-elsbetiae_contig1078:19835..200681691682823.0219176-UTR-L-elsbetiae_contig1078:19835..20068Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 19836..20068 +
1622815296.6379905-UTR-L-elsbetiae_contig1078:20473..205781622815296.6379905-UTR-L-elsbetiae_contig1078:20473..20578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 20474..20578 +
1691682823.0410986-UTR-L-elsbetiae_contig1078:20473..205781691682823.0410986-UTR-L-elsbetiae_contig1078:20473..20578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 20474..20578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.6286676-CDS-L-elsbetiae_contig1078:20068..204731622815296.6286676-CDS-L-elsbetiae_contig1078:20068..20473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1078 20069..20473 +
1691682823.0314822-CDS-L-elsbetiae_contig1078:20068..204731691682823.0314822-CDS-L-elsbetiae_contig1078:20068..20473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1078 20069..20473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1078.725.1

>prot_L-elsbetiae_contig1078.725.1 ID=prot_L-elsbetiae_contig1078.725.1|Name=mRNA_L-elsbetiae_contig1078.725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MPLSDDGGGGGGACCCCCCCIFFRCRCRRCWARARPLLAEQASGGRRGRG
NAHEPPRPGSPRGHLGLELLAGASLFHLCRRRRLRRRRRRRGGGLAAGPA
VREDGFSAPVMPTSGGRRGRARVIAGTGGGCRWS*
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mRNA from alignment at L-elsbetiae_contig1078:19836..20578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1078.725.1 ID=mRNA_L-elsbetiae_contig1078.725.1|Name=mRNA_L-elsbetiae_contig1078.725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=743bp|location=Sequence derived from alignment at L-elsbetiae_contig1078:19836..20578+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCGTACAGCATCGCCGCGCCCGCGAGCATACCCCTCGACGCCCACAT
GCTGACCCCCTCCTCCTCCCCCTCTCCGTCCCCGTTACCTTGCCCCCCGC
CCGCGCTGCCCCGCTGCGGGGAGGACGACGACTCGGCGATGGACCGGGTC
CCCGCCGCCGCCAAGAGCTCCGGAGGGGGACGGGTCATGTCCAGCAGCCG
CTGCTGCTCCTCCTGATCGTCGCGGTGGCCCTGATGCCGCTTTCTGATGA
CGGCGGCGGTGGCGGCGGTGCCTGCTGCTGCTGCTGCTGCTGCATCTTCT
TCCGCTGCCGCTGTCGCCGCTGCTGGGCTCGGGCCCGGCCCCTCCTCGCC
GAACAAGCCTCCGGAGGGCGGCGGGGGCGAGGGAATGCCCACGAGCCCCC
ACGCCCTGGCTCTCCTCGCGGCCACCTCGGCCTGGAGCTGCTGGCTGGTG
CTTCTCTCTTCCACCTCTGCCGCCGCCGCCGGCTGCGGCGGCGGCGGCGG
CGGCGCGGTGGCGGACTGGCCGCCGGTCCTGCCGTACGAGAGGACGGTTT
TTCGGCGCCGGTGATGCCGACGAGTGGTGGGCGGCGCGGCCGTGCCCGAG
TCATCGCTGGCACGGGCGGCGGCTGCCGCTGGTCTTGAGGTCGAAAACCG
AGCAGATCGCGCCGTCGGCGCGACGACGCGGAGGCGAGGGGATGCTGTGA
AGCACGAGCACTGCTGTATCGCCGCCGATGCTAGGCATGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1078:19836..20578+

>mRNA_L-elsbetiae_contig1078.725.1 ID=mRNA_L-elsbetiae_contig1078.725.1|Name=mRNA_L-elsbetiae_contig1078.725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1078:19836..20578+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCTTTCTGATGACGGCGGCGGTGGCGGCGGTGCCTGCTGCTGCTG
CTGCTGCTGCATCTTCTTCCGCTGCCGCTGTCGCCGCTGCTGGGCTCGGG
CCCGGCCCCTCCTCGCCGAACAAGCCTCCGGAGGGCGGCGGGGGCGAGGG
AATGCCCACGAGCCCCCACGCCCTGGCTCTCCTCGCGGCCACCTCGGCCT
GGAGCTGCTGGCTGGTGCTTCTCTCTTCCACCTCTGCCGCCGCCGCCGGC
TGCGGCGGCGGCGGCGGCGGCGCGGTGGCGGACTGGCCGCCGGTCCTGCC
GTACGAGAGGACGGTTTTTCGGCGCCGGTGATGCCGACGAGTGGTGGGCG
GCGCGGCCGTGCCCGAGTCATCGCTGGCACGGGCGGCGGCTGCCGCTGGT
CTTGAATGCCGCTTTCTGATGACGGCGGCGGTGGCGGCGGTGCCTGCTGC
TGCTGCTGCTGCTGCATCTTCTTCCGCTGCCGCTGTCGCCGCTGCTGGGC
TCGGGCCCGGCCCCTCCTCGCCGAACAAGCCTCCGGAGGGCGGCGGGGGC
GAGGGAATGCCCACGAGCCCCCACGCCCTGGCTCTCCTCGCGGCCACCTC
GGCCTGGAGCTGCTGGCTGGTGCTTCTCTCTTCCACCTCTGCCGCCGCCG
CCGGCTGCGGCGGCGGCGGCGGCGGCGCGGTGGCGGACTGGCCGCCGGTC
CTGCCGTACGAGAGGACGGTTTTTCGGCGCCGGTGATGCCGACGAGTGGT
GGGCGGCGCGGCCGTGCCCGAGTCATCGCTGGCACGGGCGGCGGCTGCCG
CTGGTCTTGA
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