prot_L-elsbetiae_contig10734.683.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10734.683.1
Unique Name	prot_L-elsbetiae_contig10734.683.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	37

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.640e-16
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0

Query:    1 MKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP 37
            MKWARLMFGREFRVE VL+LWDHIFASSWIEG+PDVP
Sbjct:  144 MKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVP 180

[Close]

BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.760e-16
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0

Query:    1 MKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP 37
            MKWARLMFGREFRVE VL+LWDHIFASSWIEG+PDVP
Sbjct:  362 MKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVP 398

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FWI0_ECTSI	3.640e-16	91.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGW7_9PHAE	3.760e-16	91.89	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.80		coord: 1..35 e-value: 6.5E-7 score: 31.2
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 1..28 score: 10.157
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 2..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10734	contig	L-elsbetiae_contig10734:648..758 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10734.683.1	mRNA_L-elsbetiae_contig10734.683.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10734 648..770 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10734.683.1 ID=prot_L-elsbetiae_contig10734.683.1|Name=mRNA_L-elsbetiae_contig10734.683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
MKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom
IPR035969	Rab-GTPase_TBC_sf