mRNA_L-elsbetiae_contig21384.6535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21384.6535.1
Unique NamemRNA_L-elsbetiae_contig21384.6535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21384.6535.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.750e-53
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 1 
Query:   10 LPRPQVERELIRAGILHEDGAEIDVEEGGGFADAGGAAVFNEIEVSDGEEACRVLEERLGFDEEGIAYLRTKFPPLRGELWYRREPSSSGAKTGKKYLDVFFLEETLPELLDLLLGKEGGEGGPAVGLAPEQV 408
            L   +VE+ LI AGIL  DGAEID EE     D GGA V+NEIEVSDGEEAC++LEERLGFDEEGIA+LR+K+PPLRGELWYRREP+S G+KTGKK+LDV+F+EETLP+LLDLLLG+EG  GG  VGL  +QV
Sbjct:  156 LSADEVEQRLIAAGILRGDGAEIDFEED----DGGGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGG--VGLDRKQV 282
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BLAST of mRNA_L-elsbetiae_contig21384.6535.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 8.940e-51
Identity = 93/132 (70.45%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:   10 LPRPQVERELIRAGILHEDGAEIDVEEGGGFADAGGAAVFNEIEVSDGEEACRVLEERLGFDEEGIAYLRTKFPPLRGELWYRREPSSSGAKTGKKYLDVFFLEETLPELLDLLLGKEGGEGGPAVGLAPEQ 405
            L   +VER LI AGIL  DGAEID +E     D G A V+NEIEVSDGEEACR+LEERLGFDEEGI YLR+K+PPLRGELWYRREP+S G+KTGKK+LDV+F+EETLP+LLDLLLG+EG  GG  +GL  +Q
Sbjct:  232 LSADEVERRLIAAGILRGDGAEIDFDED----DDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGG--IGLDRKQ 357
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BLAST of mRNA_L-elsbetiae_contig21384.6535.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.610e-10
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  103 ADAGGAAVFNEIEVSDGEEACRVLEERLGFDEEGIAYLRTKFPPLRGELWYRREPSSSGAKTGKKYLDVFFLEETLPELLDLLLGKE 363
            A+AG  A F+      G EA R L E +G     +A L  +F PLRGE+WYRR       + GKK LDV+FLE+TLP+L++LL   E
Sbjct:   51 AEAGELADFD-----GGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR-------RNGKKVLDVYFLEDTLPDLVELLEAPE 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21384.6535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI5_ECTSI7.750e-5371.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE8.940e-5170.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA2.610e-1045.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21384contigL-elsbetiae_contig21384:700..2195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815874.2663903-CDS-L-elsbetiae_contig21384:699..8971622815874.2663903-CDS-L-elsbetiae_contig21384:699..897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21384 700..897 +
1691683160.608373-CDS-L-elsbetiae_contig21384:699..8971691683160.608373-CDS-L-elsbetiae_contig21384:699..897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21384 700..897 +
1622815874.277737-CDS-L-elsbetiae_contig21384:1985..21951622815874.277737-CDS-L-elsbetiae_contig21384:1985..2195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21384 1986..2195 +
1691683160.6183333-CDS-L-elsbetiae_contig21384:1985..21951691683160.6183333-CDS-L-elsbetiae_contig21384:1985..2195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21384 1986..2195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21384.6535.1prot_L-elsbetiae_contig21384.6535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21384 700..2195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21384.6535.1

>prot_L-elsbetiae_contig21384.6535.1 ID=prot_L-elsbetiae_contig21384.6535.1|Name=mRNA_L-elsbetiae_contig21384.6535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MRTLPRPQVERELIRAGILHEDGAEIDVEEGGGFADAGGAAVFNEIEVSD
GEEACRVLEERLGFDEEGIAYLRTKFPPLRGELWYRREPSSSGAKTGKKY
LDVFFLEETLPELLDLLLGKEGGEGGPAVGLAPEQV
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mRNA from alignment at L-elsbetiae_contig21384:700..2195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21384.6535.1 ID=mRNA_L-elsbetiae_contig21384.6535.1|Name=mRNA_L-elsbetiae_contig21384.6535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1496bp|location=Sequence derived from alignment at L-elsbetiae_contig21384:700..2195+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCACGCTGCCCCGCCCGCAGGTGGAGCGAGAGCTGATCAGGGCCGG
CATTCTACACGAGGACGGCGCCGAGATCGACGTGGAGGAGGGGGGGGGGT
TCGCTGACGCGGGCGGGGCCGCGGTGTTCAACGAGATCGAGGTCTCTGAT
GGCGAGGAGGCGTGCCGGGTTCTAGAGGAGCGGCTCGGCTTCGACGAGGT
CCGTGCCTTTGTGTGATACATGTACCGTAGGTGGTGGCACAAGATACCAC
ACTCCCCCCGTGGACCGAATTTTAGAGCTCCATTTCTCCATAACGAAGAG
GGTGCCAGCACCAAACGGGACATTTTCAGACAGCCCTCGGCTAGATATTT
CCAACGCCACCCCCTTTCGGCACTGGCACTCTTCTTGCTGGGAGGTAATC
GAGCTTTGAAAATGTGTCCAGGGGGGGTGGTGCCTTGTGCCACCTACGGT
GTACATACGCATGTACTGCCTGGCGCCAGGAGCGGGGTTGTGTGTTTCCG
TTTAGGGAGAGAGCGCTGCTGGCGTTTTTGGTGACAAACAACAGAGTTTC
CCAACCTCGGAAAGCGTGTGTCGATTGCTTTTCGGCTTGGCCGGCCGTGT
GCAACCTGATACATCGTCTGTTGATGCATGTACGTGTGTATATGTGCGTA
TGTAGTGTACGTTAGTGTCCAGTGTACCAGTACACGGACAAAAATCTTAG
GCAAGCCACCGCGGAAAGGGGGATATTTAGTGAGGAGCCTTGGGGAAAAA
GGAATCCTTCTTCTGTGTGACCGACCATGGTTCGGCACTCTGGCAAGATG
CCCTCGTGACAAGGAGCCCCACCTATCGAGCACTGGAAATAAATGTCAAC
AAGAAGAAGAAAACAAATTTTGCGGAGTCAGTCGGCTCGGACAAGGGCTT
AGGCCTACATACTGCTCTTCTTGCGGGTCTGGCCCGCCCACGCGACACCT
CTCTCGCGCCGGGTTGTATTTGGTCGGTCGCACACCGCGAAAAAAGATCC
GCACCATCGAAGCGAAGCATCGAGCTGCGTACATACAGGTACTTACTTCG
AAGTATTATGCAATTCGGCGCTTGTTTTTTCATTAATTGTTTTTTTTTTT
TGCCCCTCCGCTGTTTTTTTTCTTCTGCGCGCGCTCGCTCTTTGTTTTCG
CCGGCCGCCAATCCATTTTTTTGTTTTTCTTCGCTGTTTTTGCCGTGTTT
TTCATATATCTTTCTCTTCTTCTTTTCCTTCTTATTTTTTGTTTTTCGTC
GCAAAAACCGCCCGACCAACTTTCGCCCGAGCTCAGGAGGGCATCGCCTA
CCTGCGGACCAAGTTCCCCCCGCTCCGCGGAGAGCTGTGGTACCGGCGGG
AGCCTTCCTCCTCGGGGGCCAAGACCGGGAAGAAATATCTCGACGTTTTC
TTCCTGGAGGAGACGCTCCCGGAGCTTCTGGACCTGCTGCTGGGAAAAGA
GGGAGGGGAGGGGGGTCCCGCGGTTGGTCTCGCCCCCGAACAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21384:700..2195+

>mRNA_L-elsbetiae_contig21384.6535.1 ID=mRNA_L-elsbetiae_contig21384.6535.1|Name=mRNA_L-elsbetiae_contig21384.6535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig21384:700..2195+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCACGCTGCCCCGCCCGCAGGTGGAGCGAGAGCTGATCAGGGCCGG
CATTCTACACGAGGACGGCGCCGAGATCGACGTGGAGGAGGGGGGGGGGT
TCGCTGACGCGGGCGGGGCCGCGGTGTTCAACGAGATCGAGGTCTCTGAT
GGCGAGGAGGCGTGCCGGGTTCTAGAGGAGCGGCTCGGCTTCGACGAGAT
GCGCACGCTGCCCCGCCCGCAGGTGGAGCGAGAGCTGATCAGGGCCGGCA
TTCTACACGAGGACGGCGCCGAGATCGACGTGGAGGAGGGGGGGGGGTTC
GCTGACGCGGGCGGGGCCGCGGTGTTCAACGAGATCGAGGTCTCTGATGG
CGAGGAGGCGTGCCGGGTTCTAGAGGAGCGGCTCGGCTTCGACGAGGAGG
GCATCGCCTACCTGCGGACCAAGTTCCCCCCGCTCCGCGGAGAGCTGTGG
TACCGGCGGGAGCCTTCCTCCTCGGGGGCCAAGACCGGGAAGAAATATCT
CGACGTTTTCTTCCTGGAGGAGACGCTCCCGGAGCTTCTGGACCTGCTGC
TGGGAAAAGAGGGAGGGGAGGGGGGTCCCGCGGTTGGTCTCGCCCCCGAA
CAGGTAGAGGGCATCGCCTACCTGCGGACCAAGTTCCCCCCGCTCCGCGG
AGAGCTGTGGTACCGGCGGGAGCCTTCCTCCTCGGGGGCCAAGACCGGGA
AGAAATATCTCGACGTTTTCTTCCTGGAGGAGACGCTCCCGGAGCTTCTG
GACCTGCTGCTGGGAAAAGAGGGAGGGGAGGGGGGTCCCGCGGTTGGTCT
CGCCCCCGAACAGGTA
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