mRNA_L-elsbetiae_contig2130.6515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2130.6515.1
Unique NamemRNA_L-elsbetiae_contig2130.6515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.870e-47
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            KVRD EGQLAFGVPEE+LAGHAFHTYSLKSNDGTVEFQFRHNVCGR MYAEGTADAVEFLAGKA + A+KRVYNMLDVLREGGM
Sbjct:  250 KVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 333          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.370e-39
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 VRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            +RD  GQ AFGVPEEYL GHAFH YSL+S DGTVEFQFRHNVCGRRMYAEGTADAVEFLA + A+ A+KRVYNM+DVL+ GG+
Sbjct:  199 IRDAPGQKAFGVPEEYLGGHAFHMYSLRSGDGTVEFQFRHNVCGRRMYAEGTADAVEFLARQMASNAQKRVYNMIDVLKMGGI 281          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A1Q9CJT0_SYMMI (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CJT0_SYMMI)

HSP 1 Score: 120 bits (302), Expect = 1.620e-33
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            ++RD   Q AFGVPEE+  GHAFHTY+L S+DG+V+FQF+HNVCGRR Y EG ADAV+F+A +AAA A K+VYNM+D+L  G M
Sbjct:   46 QLRDDASQRAFGVPEEFSNGHAFHTYTLTSSDGSVQFQFKHNVCGRRTYGEGVADAVQFIASQAAAKAPKKVYNMIDILEAGQM 129          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A7S3XN34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN34_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.710e-32
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 VRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            +RD EGQ AFGVPEEYL GHA+HTY+L S DGT EFQFRHNV GRR+YAEGTADAV+FLA +  A  +K+V++M+DVL+ G +
Sbjct:  202 IRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLAEQIKAKNDKKVFSMIDVLKAGAL 284          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A7S2AGR2_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AGR2_9DINO)

HSP 1 Score: 117 bits (294), Expect = 2.090e-31
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            KVRD EG    GVPEE++ GHA+HTY+L S DG+V+FQF+HNVCGRR YAEG ADAV+FLA K  + ++KR+++M+DVL EG M
Sbjct:  120 KVRDAEGYKKMGVPEEHVGGHAWHTYTLTSPDGSVQFQFKHNVCGRRTYAEGVADAVQFLAEKIKSGSKKRIFSMIDVLGEGKM 203          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: S8E035_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E035_9LAMI)

HSP 1 Score: 118 bits (295), Expect = 7.760e-31
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 KVRDVEGQLAF-GVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            K+RD E Q+   G+PEE+L+GHAFHTY L S DGTV F+F+HNVCGR +YAEGT DA+ FL  K    AEKR+Y+M+DVLREG M
Sbjct:  188 KIRDRESQVEILGIPEEHLSGHAFHTYRLTSPDGTVSFEFQHNVCGRSIYAEGTVDAILFLTNKVKTKAEKRIYDMIDVLREGNM 272          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A812JJH1_9DINO (DAPB2 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JJH1_9DINO)

HSP 1 Score: 117 bits (294), Expect = 1.020e-30
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            K+RD   Q AFGVPEE+  GHAFHTY+L S DG+V+FQF+HNVCGRR Y EG ADAV+F+A KA   + K+VYNM+D+L  G M
Sbjct:  186 KLRDDASQKAFGVPEEFSNGHAFHTYTLTSGDGSVQFQFKHNVCGRRTYGEGVADAVQFIAHKAMEKSPKKVYNMIDILEAGQM 269          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A7S2PFN2_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PFN2_9DINO)

HSP 1 Score: 117 bits (294), Expect = 1.070e-30
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            K+R  E Q+AFGVP++ L+GHA+HTY+L S DG+V+FQF+HNVCGRR YAEG  DAVEFL  K  + ++KRV+NM+DVL EG M
Sbjct:  188 KLRKEEDQVAFGVPKDALSGHAWHTYTLTSGDGSVQFQFKHNVCGRRTYAEGVVDAVEFLVDKIVSGSKKRVFNMIDVLSEGKM 271          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A6A4KXW2_9ERIC (DapB_C domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KXW2_9ERIC)

HSP 1 Score: 110 bits (275), Expect = 4.350e-30
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   34 GVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM 252
            GVPEE+L+GHAFH Y+L S D TV F+F+HNVCGR +YAEGT DA  FLA K  + AEKR+YNM+DVLREG M
Sbjct:    3 GVPEEHLSGHAFHVYNLTSPDKTVSFEFQHNVCGRSIYAEGTIDAAIFLAQKVRSKAEKRIYNMIDVLREGNM 75          
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Match: A0A812LTM1_SYMPI (DAPB1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812LTM1_SYMPI)

HSP 1 Score: 116 bits (291), Expect = 4.970e-30
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYAEGTADAVEFLAGKAAAVAEKRVYNMLDVL 237
            K+RD   Q AFGVPEE+  GHAFHTY+L S+DG+V+FQF+HNVCGRR Y EG ADAV+F+A KA   + K+VYNM+D+L
Sbjct:  200 KLRDDASQRAFGVPEEFANGHAFHTYTLTSSDGSVQFQFKHNVCGRRTYGEGVADAVQFIASKAMEKSSKKVYNMIDIL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2130.6515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG1_ECTSI3.870e-4791.67Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A835ZG43_9STRA1.370e-3978.31Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
A0A1Q9CJT0_SYMMI1.620e-3364.294-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
A0A7S3XN34_HETAK1.710e-3267.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AGR2_9DINO2.090e-3163.10Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
S8E035_9LAMI7.760e-3163.53Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A812JJH1_9DINO1.020e-3063.10DAPB2 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A7S2PFN2_9DINO1.070e-3063.10Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A6A4KXW2_9ERIC4.350e-3068.49DapB_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A812LTM1_SYMPI4.970e-3064.56DAPB1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2130contigL-elsbetiae_contig2130:20758..21417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.4e-37
Seed eggNOG ortholog2880.D8LDG1
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.4-hydroxy-tetrahydrodipicolinate reductase
EggNOG OGs28HEW@1,2QPSY@2759
EC1.17.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.970487-CDS-L-elsbetiae_contig2130:20757..209111622815872.970487-CDS-L-elsbetiae_contig2130:20757..20911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 20758..20911 -
1691683159.8130171-CDS-L-elsbetiae_contig2130:20757..209111691683159.8130171-CDS-L-elsbetiae_contig2130:20757..20911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 20758..20911 -
1622815872.9832044-CDS-L-elsbetiae_contig2130:21316..214171622815872.9832044-CDS-L-elsbetiae_contig2130:21316..21417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 21317..21417 -
1691683159.824555-CDS-L-elsbetiae_contig2130:21316..214171691683159.824555-CDS-L-elsbetiae_contig2130:21316..21417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2130 21317..21417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2130.6515.1prot_L-elsbetiae_contig2130.6515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2130 20758..21417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2130.6515.1

>prot_L-elsbetiae_contig2130.6515.1 ID=prot_L-elsbetiae_contig2130.6515.1|Name=mRNA_L-elsbetiae_contig2130.6515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
KVRDVEGQLAFGVPEEYLAGHAFHTYSLKSNDGTVEFQFRHNVCGRRMYA
EGTADAVEFLAGKAAAVAEKRVYNMLDVLREGGM*
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mRNA from alignment at L-elsbetiae_contig2130:20758..21417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2130.6515.1 ID=mRNA_L-elsbetiae_contig2130.6515.1|Name=mRNA_L-elsbetiae_contig2130.6515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig2130:20758..21417- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTCCGCGATGTTGAGGGCCAGCTAGCCTTCGGGGTGCCGGAGGAATA CCTGGCCGGGCACGCCTTCCACACCTACAGCCTCAAGAGCAACGACGGAA CGTGAGAGCTAAGATGCACGCCCCCTAGTATGTGACTAATCAACGCAAGC GCGCTTGGGCGGAGAAAGTTGTGCGGCTGCTGTGTCGTTTTTTTCGTACC CCCGCGGGCAGCGGCCGGTACGGTAGACCTCATGGCTTTTTTGTCACGGG GGCCATCTTGTCTCGTCTGCCACGCCTGCAGGCTCAAAGCGAGCAGTGTT GAAATTTAAGGTCCGGAACGAGACATTGGTTGTTCTCCGAGGCTGCGTTC TTTTCTGAGCGTGTCCATGAGTATGTTCCGAGCGCGTAGCGGTTAGGGCT GTTCTCCCGCCGTGACGTCTGCTCAGCCCCTGCGCCGAGTTCACTTGGTC CTCGGTACCGGCACATCGTGTGCCCTTTATTATCTACTTCCTTTAACGTA ATTCAGGGTCGAGTTCCAGTTCCGGCACAACGTGTGCGGGCGACGAATGT ACGCGGAGGGGACCGCGGATGCCGTGGAGTTCCTGGCGGGGAAAGCGGCG GCGGTGGCGGAGAAGAGGGTGTACAACATGCTCGACGTGCTGAGAGAAGG GGGAATGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2130:20758..21417-

>mRNA_L-elsbetiae_contig2130.6515.1 ID=mRNA_L-elsbetiae_contig2130.6515.1|Name=mRNA_L-elsbetiae_contig2130.6515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig2130:20758..21417- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTCCGCGATGTTGAGGGCCAGCTAGCCTTCGGGGTGCCGGAGGAATA
CCTGGCCGGGCACGCCTTCCACACCTACAGCCTCAAGAGCAACGACGGAA
CAAGGTCCGCGATGTTGAGGGCCAGCTAGCCTTCGGGGTGCCGGAGGAAT
ACCTGGCCGGGCACGCCTTCCACACCTACAGCCTCAAGAGCAACGACGGA
ACGGTCGAGTTCCAGTTCCGGCACAACGTGTGCGGGCGACGAATGTACGC
GGAGGGGACCGCGGATGCCGTGGAGTTCCTGGCGGGGAAAGCGGCGGCGG
TGGCGGAGAAGAGGGTGTACAACATGCTCGACGTGCTGAGAGAAGGGGGA
ATGTAGGGTCGAGTTCCAGTTCCGGCACAACGTGTGCGGGCGACGAATGT
ACGCGGAGGGGACCGCGGATGCCGTGGAGTTCCTGGCGGGGAAAGCGGCG
GCGGTGGCGGAGAAGAGGGTGTACAACATGCTCGACGTGCTGAGAGAAGG
GGGAATGTAG
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