mRNA_L-elsbetiae_contig213.6508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig213.6508.1
Unique NamemRNA_L-elsbetiae_contig213.6508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: D7G0Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.500e-24
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 2 
Query:    8 QEIGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSA 211
             EIGTATGIPGS+LGLTLLAWGNS GDLVT+ AVAKAGFPGMAIAGSY GPL N+L G  +PMF+SSA
Sbjct:  596 DEIGTATGIPGSILGLTLLAWGNSTGDLVTNLAVAKAGFPGMAIAGSYGGPLFNVLLGVGMPMFYSSA 663
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A6H5KVK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.750e-23
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 2 
Query:    8 QEIGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSA 211
             EIGT TGIPGS+LGLTLLAWGNS GDLVT+ AVAKAGFPGMAIAGSY GPL N+L G  +PMF+SSA
Sbjct:  561 DEIGTTTGIPGSILGLTLLAWGNSTGDLVTNLAVAKAGFPGMAIAGSYGGPLFNVLLGVGIPMFYSSA 628
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A835ZHX1_9STRA (Sodium/calcium exchanger protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.260e-14
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2 
Query:    8 QEIGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPM 196
            + IG  TG+P S+LGLT+LAWGNS+GDLVT+ AV++AG PGMA+AG Y GPL N+L G   P+
Sbjct:  550 ETIGLITGLPASILGLTVLAWGNSSGDLVTNLAVSRAGRPGMALAGCYGGPLFNLLIGLGAPL 612
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A484DYS3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYS3_BRELC)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-13
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSAS 214
            +G  T +  S+LGLT+LAWGNS GDL+TD +VA+AGFP MAIAG + GP+LN+L G  LPM F+  S
Sbjct:  504 VGYITHVSNSLLGLTVLAWGNSVGDLITDVSVARAGFPRMAIAGCFGGPVLNLLLGLGLPMAFAFVS 570
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A3F2S1V7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1V7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-12
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFS 205
            +G  T    S+LGLT+LAWGNS GDL+TD +VA+AGFP MAIAG + GP+ N+L G  LPM ++
Sbjct:  234 VGYITRASNSLLGLTVLAWGNSVGDLITDVSVARAGFPQMAIAGCFGGPVFNVLLGLGLPMLYA 297
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A3M6VI61_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VI61_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-12
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSAS 214
            +G  T    S LGLT+LAWGNS GDL+TD +VA+AGFP MAIAG + GP+ NIL G  LPM F+  S
Sbjct:  439 VGYITHASNSWLGLTVLAWGNSVGDLITDVSVARAGFPQMAIAGCFGGPVFNILLGLGLPMMFAFVS 505
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A3R7J6W2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J6W2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.460e-12
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFS 205
            +G  T    S+LGLT+LAWGNS GDL+TD +VA+AGFP MAIAG + GP+ NIL G  LPM ++
Sbjct:  348 VGYITRASNSLLGLTVLAWGNSVGDLITDVSVARAGFPQMAIAGCFGGPVFNILLGLGLPMLYA 411
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: A0A6A3P277_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P277_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSAS 214
            +G  T    S+LGLT+LAWGNS GD +TD +VA+AGFP MAIAG Y GP+ NIL G  LPM ++  S
Sbjct:  482 VGYITHASNSLLGLTVLAWGNSVGDFITDVSVARAGFPQMAIAGCYGGPVFNILLGLGLPMAYAFVS 548
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: W2L5X6_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2L5X6_PHYPR)

HSP 1 Score: 79.0 bits (193), Expect = 2.440e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPMFFSSAS 214
            +G  T    S+LGLT+LAWGNS GD +TD +VA+AGFP MAIAG + GP+ NIL G  LPM F+  S
Sbjct:  488 VGYITHASNSLLGLTVLAWGNSVGDFITDVSVARAGFPQMAIAGCFGGPVFNILLGLGLPMAFAFVS 554
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BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Match: F0WG74_9STRA (Ca2: Cation Antiporter (CaCA) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG74_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.130e-12
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:   14 IGTATGIPGSVLGLTLLAWGNSAGDLVTDFAVAKAGFPGMAIAGSYRGPLLNILFGARLPM 196
            +G ATGI  S+LGLT+L+WGNS GDL+T+ +VA++GFP MA+AG + GP+ NIL G  LP+
Sbjct:  449 LGKATGISNSLLGLTVLSWGNSIGDLITNISVARSGFPDMALAGCFGGPVFNILVGIGLPL 509
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig213.6508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Z1_ECTSI5.500e-2480.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVK8_9PHAE1.750e-2379.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHX1_9STRA3.260e-1461.90Sodium/calcium exchanger protein-domain-containing... [more]
A0A484DYS3_BRELC1.350e-1359.70Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3F2S1V7_9STRA1.200e-1257.81Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6VI61_9STRA1.290e-1259.70Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A3R7J6W2_9STRA1.460e-1259.38Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A6A3P277_9STRA1.810e-1258.21Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
W2L5X6_PHYPR2.440e-1258.21Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
F0WG74_9STRA3.130e-1259.02Ca2: Cation Antiporter (CaCA) Family putative n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig213contigL-elsbetiae_contig213:12031..13583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1085
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig213.6508.1prot_L-elsbetiae_contig213.6508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig213 12769..13023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.4146426-UTR-L-elsbetiae_contig213:12030..122431622815872.4146426-UTR-L-elsbetiae_contig213:12030..12243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 12031..12243 +
1691683159.342213-UTR-L-elsbetiae_contig213:12030..122431691683159.342213-UTR-L-elsbetiae_contig213:12030..12243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 12031..12243 +
1622815872.4242847-UTR-L-elsbetiae_contig213:12711..127681622815872.4242847-UTR-L-elsbetiae_contig213:12711..12768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 12712..12768 +
1691683159.3524084-UTR-L-elsbetiae_contig213:12711..127681691683159.3524084-UTR-L-elsbetiae_contig213:12711..12768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 12712..12768 +
1622815872.4443107-UTR-L-elsbetiae_contig213:13023..135831622815872.4443107-UTR-L-elsbetiae_contig213:13023..13583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 13024..13583 +
1691683159.3760273-UTR-L-elsbetiae_contig213:13023..135831691683159.3760273-UTR-L-elsbetiae_contig213:13023..13583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 13024..13583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.4337795-CDS-L-elsbetiae_contig213:12768..130231622815872.4337795-CDS-L-elsbetiae_contig213:12768..13023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 12769..13023 +
1691683159.3623145-CDS-L-elsbetiae_contig213:12768..130231691683159.3623145-CDS-L-elsbetiae_contig213:12768..13023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 12769..13023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig213.6508.1

>prot_L-elsbetiae_contig213.6508.1 ID=prot_L-elsbetiae_contig213.6508.1|Name=mRNA_L-elsbetiae_contig213.6508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MMILVLVGTLPSIVLSGFRFPGKAPLALPGVCGAYIIGVAYYTSTFSEWS
ERSIGRCLICWPPRSVRGRIGDFSVSPVVCCSWA*
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mRNA from alignment at L-elsbetiae_contig213:12031..13583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig213.6508.1 ID=mRNA_L-elsbetiae_contig213.6508.1|Name=mRNA_L-elsbetiae_contig213.6508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1553bp|location=Sequence derived from alignment at L-elsbetiae_contig213:12031..13583+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACGCAGGAAATAGGCACCGCAACGGGAATCCCGGGCAGCGTCCTGG
GGTTGACGCTCCTCGCCTGGGGTAACTCGGCGGGGGACCTGGTCACCGAC
TTTGCCGTGGCCAAGGCCGGCTTTCCGGGCATGGCGATCGCGGGAAGCTA
CCGAGGTCCTCTGCTCAACATCCTCTTTGGTGCTCGGCTTCCCATGTTCT
TCAGCTCCGCGAGGTATGGGGCACTGGTTGGTTCTGCTGCGACACGTTTG
ATTATTACTGGCTGTCTGTGTTGTGTTTCCCGATGCATTGTCATGAAGGC
AGGTACTGAAGGGGTTAGTAGAACGCGAGGCACCACACCATGCAACCAGG
TTTGCACGGCGGAGCTGCTCGATCGAGGGGTTGGTTGGTTCTGCTTTCGT
TGCTTCGTCCCATCACGGCCCACCGACCCCAGCGTTTAGAGTTTCGCCTT
TCTTTGGGTTTTTCACCTGACGGAGGAACGGCCACAGACCGTATCTTCTG
ACGCTGTGTGCTGGCTTCGTTTTCCGCTGCCCATGCTTCCAACAGATGCT
GTGCCGGAAAGGCTACGTGTATGTAATGTCTGGCGGTGGTGCCCATAAAG
CCCACTTCGCCTGTTTGAACCTTCTCCTCGGGCTCTTTCTCTGTTTCTCT
CTCTGTCGTGTCCCCCAAACGCGAAAATAAGTACTACCCTACGGCGGCGG
TGTGCGAGGTGGACGACTCCACCGTGTTCACGGCGTGCATGATGATCCTA
GTGCTTGTGGGCACCCTGCCCTCCATCGTTCTGTCCGGCTTCCGCTTCCC
CGGCAAGGCCCCCCTTGCTCTGCCCGGAGTATGCGGGGCTTACATTATCG
GGGTTGCGTACTACACGTCGACGTTCAGCGAATGGAGTGAAAGGTCGATA
GGACGGTGTTTGATTTGTTGGCCACCGCGTTCTGTGAGGGGCAGGATTGG
TGATTTTAGTGTATCACCTGTGGTATGTTGTTCTTGGGCGTGAGGCCTGT
TGCGTGAAGAGCTCTGCTACACGACGAGCACGGATGCCACTTGGTCAGAA
CGAGGTGTTGTCAGCCTTGTGGGTACCAAGAGCCGCCCCCCTTGCTATGT
TCGTGTCTTATACTTCTACAAGTGTGGCGCTTTCTGGCAAAATGAAACTT
CAGGGCGGTGGATATGGCGAGTGCTTACATACAATAGAGATCGGGTGCTT
CGTTATTTTGTTAGCATTCTTGCTTCAGGTAAATTCCTTTGTGGGGCGTG
ATGGCCGATGGTGTGGGACATAGGTTCCGAATTCAATTTAGTCTCGGCCA
GGACGCTTCACCTCCTTTTCCATTTCGTCTAGTCCGTCCGAACTAGGGTA
CTGACCTTGGCAACACAACGTTGACTTTCTCCAGAACTGTTATTCTTGTT
CGATTGTGGGGAGGGCGCTTTGGTGACGTAAATAGCTTGCTGCTAAGTTG
CAGCACGCGTTTGGCCTAGCCACCACCAGTATGTGTTTTTGAGGAGGTGT
CTGGCCTCTGGAGAATTTTTGATAAAGTATGCGAGAGCAAGAATAATTGC
GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig213:12031..13583+

>mRNA_L-elsbetiae_contig213.6508.1 ID=mRNA_L-elsbetiae_contig213.6508.1|Name=mRNA_L-elsbetiae_contig213.6508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig213:12031..13583+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGATCCTAGTGCTTGTGGGCACCCTGCCCTCCATCGTTCTGTCCGG
CTTCCGCTTCCCCGGCAAGGCCCCCCTTGCTCTGCCCGGAGTATGCGGGG
CTTACATTATCGGGGTTGCGTACTACACGTCGACGTTCAGCGAATGGAGT
GAAAGGTCGATAGGACGGTGTTTGATTTGTTGGCCACCGCGTTCTGTGAG
GGGCAGGATTGGTGATTTTAGTGTATCACCTGTGGTATGTTGTTCTTGGG
CGTGAATGATGATCCTAGTGCTTGTGGGCACCCTGCCCTCCATCGTTCTG
TCCGGCTTCCGCTTCCCCGGCAAGGCCCCCCTTGCTCTGCCCGGAGTATG
CGGGGCTTACATTATCGGGGTTGCGTACTACACGTCGACGTTCAGCGAAT
GGAGTGAAAGGTCGATAGGACGGTGTTTGATTTGTTGGCCACCGCGTTCT
GTGAGGGGCAGGATTGGTGATTTTAGTGTATCACCTGTGGTATGTTGTTC
TTGGGCGTGA
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