mRNA_L-elsbetiae_contig2129.6503.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2129.6503.1
Unique NamemRNA_L-elsbetiae_contig2129.6503.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2129.6503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2129contigL-elsbetiae_contig2129:18288..21541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002250.1
Exons2
Model size519
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2129.6503.1prot_L-elsbetiae_contig2129.6503.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2129 18288..21534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.0076783-CDS-L-elsbetiae_contig2129:18287..183651622815872.0076783-CDS-L-elsbetiae_contig2129:18287..18365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 18288..18365 -
1691683159.1014056-CDS-L-elsbetiae_contig2129:18287..183651691683159.1014056-CDS-L-elsbetiae_contig2129:18287..18365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 18288..18365 -
1622815872.0244358-CDS-L-elsbetiae_contig2129:21102..215341622815872.0244358-CDS-L-elsbetiae_contig2129:21102..21534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 21103..21534 -
1691683159.112691-CDS-L-elsbetiae_contig2129:21102..215341691683159.112691-CDS-L-elsbetiae_contig2129:21102..21534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2129 21103..21534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.034295-UTR-L-elsbetiae_contig2129:21534..215411622815872.034295-UTR-L-elsbetiae_contig2129:21534..21541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 21535..21541 -
1691683159.1240811-UTR-L-elsbetiae_contig2129:21534..215411691683159.1240811-UTR-L-elsbetiae_contig2129:21534..21541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2129 21535..21541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2129.6503.1

>prot_L-elsbetiae_contig2129.6503.1 ID=prot_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MEVDRSGGGDSSDSSDGGVEEEEEEEEEDDDDDDEDEDGEDDEEDEEDDL
DPAVEKIVDRHVDGGFLDPRKWRQTVPFDRPGDGYWREDHAGPRVRQFRD
ATPADLRVAKPRPPPAYILRNPFSSKATKQKYDAQMDMYYACRKVAVSSD
GEVFRATNRSIEAALRRTPG
back to top

mRNA from alignment at L-elsbetiae_contig2129:18288..21541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2129.6503.1 ID=mRNA_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3254bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:18288..21541- (Laminarionema elsbetiae ELsaHSoW15)
CGTCGTAATGGAGGTCGATCGGAGCGGCGGGGGAGACTCCAGCGACTCCT
CTGACGGGGGCGTCGAAGAGGAGGAGGAAGAGGAAGAAGAGGACGACGAC
GACGACGACGAGGACGAGGACGGTGAAGACGACGAAGAGGACGAAGAGGA
CGACCTGGACCCAGCGGTCGAGAAAATCGTCGACCGACACGTGGACGGCG
GGTTCCTCGACCCCCGCAAGTGGCGGCAGACGGTCCCCTTCGACCGGCCG
GGCGACGGCTACTGGCGGGAGGACCATGCCGGCCCCCGCGTGCGGCAGTT
CCGCGACGCGACGCCCGCCGACCTGAGAGTCGCCAAGCCGCGGCCCCCGC
CCGCCTACATCTTGCGGAACCCCTTCAGCTCGAAAGCGACCAAGCAGAAG
TACGACGCTCAGATGGACATGTACTACGCCTGCAGGAAGGTTAGAGGTTT
CGGGCAGACTAGACTGCTGTAATTAATCGCCTCGTTTAATTTCCCCCCGC
CCCGGGGAAGGGGATCTGCTTTTTTATTTGTGACAGAAACAATACCCATC
TCCGGGGGGGGGGGCTCAGAGAAAGCATGCTTCCAGGCCGAAAAAGTGCT
GGGGGGGGGGTAGACACGATTACGTTATCTGTCTCTCCCCCCTCTCTCAT
CTGTTTTTTTTGGCAGTGTTATTTGGAATCGTTTTCAAGGAGGCGCAGAA
ATGAGCTCTTTCTTGACAAGTGCTCGCAGCTGAATACAGATTTTGCAACG
CAGCAAGCTCAGACTTGTAGCTCTGATACCTGTCGAGTGTTGAGCAAGAA
CCAAGCGAATCGATGCTCTCGTGGTGGAGTACGAACAATTTAGGGCGTCA
ACAAACTGCTGGAGTGGCCCTGCAGACGAGAAAACGCAAAAAAAGACCCC
CTACCAAAAGCCCCGCCCTATCGAGGCACACGCTCGCACCGGCGCGCCAG
CCCTTGTAGCTCACAGTCACCACCCCAGACGAAACAAACCAAAGGGGAGG
ATATTCACTACTTATGACTATTGTAGCGTCGTTGCGGGTTTCAGACCATG
AATCGCTCTGTGAGCGTCAAATCAGAGCTTCCTTCGAACACGCACTGAGG
GGCTCGGCGAGGCCAGCGCCAGTAGACAGCAGCAGCTGTAGTTAGTGCCC
TACAAAACGACTGTCAGTATTGGCAAGTGTTCTACACACCTGGGACCGTA
TACTTTCCGATGTGTACAGTTGCCTCGTGGATGGATGCTATCTGGCTCTG
CCGCCAAACTACCCCAAAATCGTGCTGTGGATCAGCGGACTGGCTCTCTC
TCTCTTGTCCGAGCTCTTCCAGTCCAGTATGAATGTCAAGCGATGCTGAG
AGTTAGTGCCCTGCAATAATTGACGCCTAATATTTTGTCCTAGTATGCAG
CCAAGGACCTTATCCACATGTTCTATGACTCCTGGCTTGGATGACTTCCT
CGAAGCTGAGCTTTCGACCTCTCCGTATCTGCCTACACTGAAGATGTGTG
TTTTTGTACGTCCCAGGAAATCCCTCCCAAAAAAACCAATCCCGTATGCG
CCCCCTTAAAAGCCTAATTCCAATAACACTGTTGGGAGGGGGGGATGCCG
GCAGCCTGTCGAAAAGAGAAGCTGTCGCGCAGCACTTTTGTGACATCTTT
ATCTTGGGGCATGGAGCGAGAAGGGCATGATGAGTGTACACACGTCACGC
CCTTGCTCTCGCGCGCGAACAGCTGCCGGTTGTCGTCAGTAGTCTCTCTC
TCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGTGTCGTTC
CCATTTGTTTTGGCGACAGTCCCCCCGAGTGGAGACGTATACTACACCTT
GCGGTGTACTTAGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACT
AGAACCAACCGGGGCCACACAGGAGGGGGTGAACACCAGGGTCGTAAACT
CGCCGCAGGCGGTGTGCGGCTCCCCGCCAGGGCCTCCCGGGAGGGCCGCC
AGAGGCCCGCTCCCCGCACAGGGGCCCGCCGGAGGCATTTGTTTTAGCTT
ATTGTTGCCTTTATAGTCGGCAAATCACTTCAAAATCAAGTGTTTTTGGT
GAACCAAAGCGTTTTTGATGCTGCTTTGGATGCAGTACACCCTCCTCGTC
GTTTGAAACCCACTTTTACGTAAAAAAAAAAGTAAGAGTCGAATCTTTGT
TTCGCCTCGCGGCGTCATGAAAAGGGCCCAAATATTTTTCGCCCTGCAAA
AAGGGATGTGCGGCAAGCTTTGCCGCACGTCGCCTCCGGCAAATTGTACG
CTGCGCGCACTTTCTCAATGTTTTGGTGCGCCAGCGCACCAGCGGCTCAC
CTATTTACGACCCTGGTGTGTACACTGGGGCTTTTTTCTTCTTTTTCTTT
TTCTTTTTTTGCCCCACCTTCTTTCCTTGCTCCAGCGGTGCTGTGCTTGC
CTTCATATTTATCGCGAGAAGGGTTCGGCTGTCTCTTTCCCTCGTCAACG
TGATTACGTCTTGGGAAGTTTGATACTCGCGAGCTTTTCAGCTTTTATCG
CTTTCACCTTCAAAGTCTCAAAAGAAAACACTTCTGCTTGGGATTGAACT
CCAGACTGTGCTGCTAGCGGGCTCGAAGCTGAACCACTAGACCACCGGGG
CGACCGGTGTGTAGTTTACGCAGGGATTTCGTGTTCACCTAACATACGGG
ATAAAGCATGGGAACCGGGAAAAAAGGGGGGTCAGTGGTTAGGGTTAGGG
TTATTTTCCTAGAGAAACTTAATTTCCGGCGGAAGGCAGGCAGTCCCTGG
TTGTTGCCCTGTGAAAAGCCACTGCCCCCCCCCCCCCTCGTCCCGCACTG
AACGCGAACGAACCGCGCTACTGACTGTAGCTGTTGTATCATTTTTTCTC
TGCCTCTTTGCGCGCTCCCGTGTTGGTTGGTGTGTTGCGCGGTACATATG
TTCCTACACATATGTTTTATAGATTGCTCTGCGTGGCATCGCGCTTTCCA
ACTTTCCTTTTCTACCGCGGCGTCGAGTGTGCCTTGTTTTGTGGCCACAG
ACGGGCCGGGCCCCCAAGGATGGGCTAATGTGAGAAACAAAATATTATAT
AATGGGAGAAACAACAACATGATGTGATATCCTATGTACAACAACAACAG
TGATATCCTACAATAAAACCCCGAAGGTGGCCGTGTCATCCGATGGCGAG
GTCTTCCGAGCGACCAACAGGAGCATCGAGGCGGCGCTGAGACGGACTCC
CGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2129:18288..21541-

>mRNA_L-elsbetiae_contig2129.6503.1 ID=mRNA_L-elsbetiae_contig2129.6503.1|Name=mRNA_L-elsbetiae_contig2129.6503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig2129:18288..21541- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTCGATCGGAGCGGCGGGGGAGACTCCAGCGACTCCTCTGACGG
GGGCGTCGAAGAGGAGGAGGAAGAGGAAGAAGAGGACGACGACGACGACG
ACGAGGACGAGGACGGTGAAGACGACGAAGAGGACGAAGAGGACGACCTG
GACCCAGCGGTCGAGAAAATCGTCGACCGACACGTGGACGGCGGGTTCCT
CGACCCCCGCAAGTGGCGGCAGACGGTCCCCTTCGACCGGCCGGGCGACG
GCTACTGGCGGGAGGACCATGCCGGCCCCCGCGTGCGGCAGTTCCGCGAC
GCGACGCCCGCCGACCTGAGAGTCGCCAAGCCGCGGCCCCCGCCCGCCTA
CATCTTGCGGAACCCCTTCAGCTCGAAAGCGACCAAGCAGAAGTACGACG
CTCAGATGGACATGTACTACGCCTGCAGGAAGATGGAGGTCGATCGGAGC
GGCGGGGGAGACTCCAGCGACTCCTCTGACGGGGGCGTCGAAGAGGAGGA
GGAAGAGGAAGAAGAGGACGACGACGACGACGACGAGGACGAGGACGGTG
AAGACGACGAAGAGGACGAAGAGGACGACCTGGACCCAGCGGTCGAGAAA
ATCGTCGACCGACACGTGGACGGCGGGTTCCTCGACCCCCGCAAGTGGCG
GCAGACGGTCCCCTTCGACCGGCCGGGCGACGGCTACTGGCGGGAGGACC
ATGCCGGCCCCCGCGTGCGGCAGTTCCGCGACGCGACGCCCGCCGACCTG
AGAGTCGCCAAGCCGCGGCCCCCGCCCGCCTACATCTTGCGGAACCCCTT
CAGCTCGAAAGCGACCAAGCAGAAGTACGACGCTCAGATGGACATGTACT
ACGCCTGCAGGAAGGTGGCCGTGTCATCCGATGGCGAGGTCTTCCGAGCG
ACCAACAGGAGCATCGAGGCGGCGCTGAGACGGACTCCCGGGGTGGCCGT
GTCATCCGATGGCGAGGTCTTCCGAGCGACCAACAGGAGCATCGAGGCGG
CGCTGAGACGGACTCCCGGG
back to top