mRNA_L-elsbetiae_contig21167.6450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21167.6450.1
Unique NamemRNA_L-elsbetiae_contig21167.6450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21167.6450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21167contigL-elsbetiae_contig21167:517..1249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.5252259-UTR-L-elsbetiae_contig21167:516..8471622815867.5252259-UTR-L-elsbetiae_contig21167:516..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21167 517..847 +
1691683156.0785651-UTR-L-elsbetiae_contig21167:516..8471691683156.0785651-UTR-L-elsbetiae_contig21167:516..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21167 517..847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.534647-CDS-L-elsbetiae_contig21167:847..12491622815867.534647-CDS-L-elsbetiae_contig21167:847..1249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21167 848..1249 +
1691683156.0985005-CDS-L-elsbetiae_contig21167:847..12491691683156.0985005-CDS-L-elsbetiae_contig21167:847..1249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21167 848..1249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21167.6450.1prot_L-elsbetiae_contig21167.6450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21167 848..1249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21167.6450.1

>prot_L-elsbetiae_contig21167.6450.1 ID=prot_L-elsbetiae_contig21167.6450.1|Name=mRNA_L-elsbetiae_contig21167.6450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MCREAANRHRTPSFCWLDAGCIVHKVDRLDISAVPIFVSLSEVGGFPRDA
MYVHLFCFCLPLDVCAYDISFMLTPPSSNLEYASSNRREPITQPVRCRHA
DMPTMQHYRTTVSLKLQVEMLFFYIKLHMYVLHS
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mRNA from alignment at L-elsbetiae_contig21167:517..1249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21167.6450.1 ID=mRNA_L-elsbetiae_contig21167.6450.1|Name=mRNA_L-elsbetiae_contig21167.6450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=733bp|location=Sequence derived from alignment at L-elsbetiae_contig21167:517..1249+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGATTTCAAAAAAAGGCTCTTGGAGGCACCTACCTACGGCGTCGACAG
GTCGGTTAGGACAACCGTCCCTAGTGGCCACCGCGCCATGGTCTTTGTAG
TGACGTGTTCATCTAGAACACGCCACCGCGTTGTGGCCACTGCATTCAAA
CTAGCTTGTATTGTGGATCTGTAAAATAGTATTAGTATTTACGCAGCAAC
CGGTCCTCCATCCTCCCATGGCCATGTTGTGGGAGGTGGCAGAGTCTGCG
TCCGCCCCACTGCTGTGCCTGTACTTCTCGCTGGCTCTCAGAGTAAAAAT
GAAATAATACAATCAGTGCCTTCCGTGTCGCATGTGCCGCGAAGCTGCGA
ATCGTCACCGAACTCCGTCGTTCTGCTGGTTAGATGCGGGATGTATTGTA
CATAAAGTAGATAGACTAGATATATCCGCTGTCCCCATTTTTGTTTCTCT
CTCAGAAGTTGGTGGGTTTCCGCGCGACGCGATGTACGTACATCTTTTTT
GTTTTTGTTTGCCCCTCGACGTGTGTGCGTATGATATATCGTTCATGTTG
ACACCTCCAAGTAGCAACTTGGAGTACGCGAGCAGCAATAGAAGAGAACC
AATAACCCAACCAGTGCGTTGCCGACATGCCGACATGCCGACGATGCAAC
ATTATCGTACAACAGTCTCCCTCAAACTCCAAGTGGAAATGCTTTTTTTC
TACATCAAGCTACATATGTATGTATTACATTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21167:517..1249+

>mRNA_L-elsbetiae_contig21167.6450.1 ID=mRNA_L-elsbetiae_contig21167.6450.1|Name=mRNA_L-elsbetiae_contig21167.6450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig21167:517..1249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCGCGAAGCTGCGAATCGTCACCGAACTCCGTCGTTCTGCTGGTT
AGATGCGGGATGTATTGTACATAAAGTAGATAGACTAGATATATCCGCTG
TCCCCATTTTTGTTTCTCTCTCAGAAGTTGGTGGGTTTCCGCGCGACGCG
ATGTACGTACATCTTTTTTGTTTTTGTTTGCCCCTCGACGTGTGTGCGTA
TGATATATCGTTCATGTTGACACCTCCAAGTAGCAACTTGGAGTACGCGA
GCAGCAATAGAAGAGAACCAATAACCCAACCAGTGCGTTGCCGACATGCC
GACATGCCGACGATGCAACATTATCGTACAACAGTCTCCCTCAAACTCCA
AGTGGAAATGCTTTTTTTCTACATCAAGCTACATATGTATGTATTACATT
CTATGTGCCGCGAAGCTGCGAATCGTCACCGAACTCCGTCGTTCTGCTGG
TTAGATGCGGGATGTATTGTACATAAAGTAGATAGACTAGATATATCCGC
TGTCCCCATTTTTGTTTCTCTCTCAGAAGTTGGTGGGTTTCCGCGCGACG
CGATGTACGTACATCTTTTTTGTTTTTGTTTGCCCCTCGACGTGTGTGCG
TATGATATATCGTTCATGTTGACACCTCCAAGTAGCAACTTGGAGTACGC
GAGCAGCAATAGAAGAGAACCAATAACCCAACCAGTGCGTTGCCGACATG
CCGACATGCCGACGATGCAACATTATCGTACAACAGTCTCCCTCAAACTC
CAAGTGGAAATGCTTTTTTTCTACATCAAGCTACATATGTATGTATTACA
TTCT
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