mRNA_L-elsbetiae_contig2105.6383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2105.6383.1
Unique NamemRNA_L-elsbetiae_contig2105.6383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2105.6383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2105contigL-elsbetiae_contig2105:8104..9308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2105.6383.1prot_L-elsbetiae_contig2105.6383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2105 8104..9306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.8075395-CDS-L-elsbetiae_contig2105:8103..81801622815863.8075395-CDS-L-elsbetiae_contig2105:8103..8180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 8104..8180 +
1691683154.1012669-CDS-L-elsbetiae_contig2105:8103..81801691683154.1012669-CDS-L-elsbetiae_contig2105:8103..8180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 8104..8180 +
1622815863.8192055-CDS-L-elsbetiae_contig2105:8938..90831622815863.8192055-CDS-L-elsbetiae_contig2105:8938..9083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 8939..9083 +
1691683154.1109784-CDS-L-elsbetiae_contig2105:8938..90831691683154.1109784-CDS-L-elsbetiae_contig2105:8938..9083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 8939..9083 +
1622815863.8289242-CDS-L-elsbetiae_contig2105:9276..93061622815863.8289242-CDS-L-elsbetiae_contig2105:9276..9306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 9277..9306 +
1691683154.1215792-CDS-L-elsbetiae_contig2105:9276..93061691683154.1215792-CDS-L-elsbetiae_contig2105:9276..9306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2105 9277..9306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2105.6383.1

>prot_L-elsbetiae_contig2105.6383.1 ID=prot_L-elsbetiae_contig2105.6383.1|Name=mRNA_L-elsbetiae_contig2105.6383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
HSISVTGDLKYYVASTCPTNLYDVGMWVGSGDSCNVYGFDCQDDWAHERT
DLDSDTCADLRSGYFTYFKGVTFEVPCKSYDYYG
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mRNA from alignment at L-elsbetiae_contig2105:8104..9308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2105.6383.1 ID=mRNA_L-elsbetiae_contig2105.6383.1|Name=mRNA_L-elsbetiae_contig2105.6383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1205bp|location=Sequence derived from alignment at L-elsbetiae_contig2105:8104..9308+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCATTTCCGTCACGGGCGACCTGAAGTACTACGTTGCATCTACTTG
CCCGACGAACCTCTACGACGTGGGGATGTGAGAGACGATTTGATTGGCGG
GGAGACCCCATTCCTCTCTATTGTTTTGAAGTATATCCTTTGCTTGTAAC
AGCGAGGTTACAGTAGTATTATTGTTAGATATACTATAATTATTACTAGT
ATAATTTTATAATTATTTGGTTTCGCCCTCCGACAAATGCAGAGACTGCA
TTTCGTGGTGAATTCATCGGTGGGGCGTGCCAAGCGAATCACAGAAAAAA
CGTAATCGCCTCTGAGGTTTCCCTGGGATATGAACCCTACTGCCTATCTA
TTCGATCTGGGAGCGTGATTTCTGCGAGTGCCCCCCAGCGGGGGGGCCGT
TTTTTCGAAGAAACCAAGATCCCCCTTTCTTTCTGGAGGGAACAAGTTCT
CCCCGGTGGTTGTACACACATACTTCGAAGTACATAGATAAATACATACA
TACATGCCATATGAAGGCAGTATTGTCCACACTTTTTTGCTTTCACTGTC
AAATGTGTCTCTCACCAAGATGAATTATTTGAGAATACGTCGTCGCGGTC
ACCCGTCTGGTTCGGCACAGGGTGCAGTAGTTTTGGTTAGCGGCGGGTTA
GCGGCGGGAAGTGGGAAAAATTTGCTACGGTTGGTTGCTGGTGTTGGTTT
CACATCATCGCCATCTCGCAACTATCACCTGCAACAACGTATGCTATTCG
CACGACTGAGAGAAACTGCTTGCTGTAGATGATGCCCACGTGCAAACATC
GACGACGCCGCCGATCGAATAACGTTTTTCGTCAGGTGGGTCGGCTCCGG
AGACTCGTGCAACGTGTACGGGTTCGACTGCCAGGACGACTGGGCACACG
AAAGAACCGATCTTGACAGCGACACATGCGCAGACCTGAGAAGCGGATAT
TTTACGTATTTCAAGGGTGTCACGTTTGAGGTAAGTCAATGCTCGCTTGT
CGGGTGTTCGGGATCATCAGGCCATAATGGGTGCACGTGCAAACAAACGT
CACCTGGACATGAACAACCCTCAAGTCTAGGTATCTACACATATACCCGA
ATTAACCAATTTCGGACACAAGGAAAACAGAGCTGAAAAGGTGCTCTTGA
AACCTTCTTTCCGCCCGATGCAGGTGCCGTGCAAGAGTTACGACTACTAC
GGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2105:8104..9308+

>mRNA_L-elsbetiae_contig2105.6383.1 ID=mRNA_L-elsbetiae_contig2105.6383.1|Name=mRNA_L-elsbetiae_contig2105.6383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig2105:8104..9308+ (Laminarionema elsbetiae ELsaHSoW15)
CACTCCATTTCCGTCACGGGCGACCTGAAGTACTACGTTGCATCTACTTG
CCCGACGAACCTCTACGACGTGGGGATCACTCCATTTCCGTCACGGGCGA
CCTGAAGTACTACGTTGCATCTACTTGCCCGACGAACCTCTACGACGTGG
GGATGTGGGTCGGCTCCGGAGACTCGTGCAACGTGTACGGGTTCGACTGC
CAGGACGACTGGGCACACGAAAGAACCGATCTTGACAGCGACACATGCGC
AGACCTGAGAAGCGGATATTTTACGTATTTCAAGGGTGTCACGTTTGAGG
TGGGTCGGCTCCGGAGACTCGTGCAACGTGTACGGGTTCGACTGCCAGGA
CGACTGGGCACACGAAAGAACCGATCTTGACAGCGACACATGCGCAGACC
TGAGAAGCGGATATTTTACGTATTTCAAGGGTGTCACGTTTGAGGTGCCG
TGCAAGAGTTACGACTACTACGGAGTGCCGTGCAAGAGTTACGACTACTA
CGGA
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