mRNA_L-elsbetiae_contig20955.6337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20955.6337.1
Unique NamemRNA_L-elsbetiae_contig20955.6337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20955.6337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20955contigL-elsbetiae_contig20955:686..1670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815859.4322731-CDS-L-elsbetiae_contig20955:685..7821622815859.4322731-CDS-L-elsbetiae_contig20955:685..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20955 686..782 +
1691683151.2186477-CDS-L-elsbetiae_contig20955:685..7821691683151.2186477-CDS-L-elsbetiae_contig20955:685..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20955 686..782 +
1622815859.4425352-CDS-L-elsbetiae_contig20955:1381..16681622815859.4425352-CDS-L-elsbetiae_contig20955:1381..1668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20955 1382..1668 +
1691683151.2269723-CDS-L-elsbetiae_contig20955:1381..16681691683151.2269723-CDS-L-elsbetiae_contig20955:1381..1668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20955 1382..1668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20955.6337.1prot_L-elsbetiae_contig20955.6337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20955 686..1668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20955.6337.1

>prot_L-elsbetiae_contig20955.6337.1 ID=prot_L-elsbetiae_contig20955.6337.1|Name=mRNA_L-elsbetiae_contig20955.6337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
WLYPTVRLPRFCSSLLARSGTTWPPTLVDETSASRASCGTLSSTRSAAPT
PVLPLPLPLLLLLRPHRRGQATRVLPPAGSPLVTRRPSRWTLRLLPAVPL
LLLLLLHTGLTFISLPPPQPALPPPPHP
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mRNA from alignment at L-elsbetiae_contig20955:686..1670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20955.6337.1 ID=mRNA_L-elsbetiae_contig20955.6337.1|Name=mRNA_L-elsbetiae_contig20955.6337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=985bp|location=Sequence derived from alignment at L-elsbetiae_contig20955:686..1670+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCTATCCAACCGTTCGTTTGCCCCGGTTTTGTAGCTCCCTGCTGGC
AAGGTCCGGTACGACATGGCCTCCTACACTGGTGGACGAGACCTCAGGTA
ATCCGGGCAAGAAAGCTAGCAAGCGAAAATTAAAAACCTGCAAAACCACC
ATCCGAAACCGTTGTAGTTACTTTTTTCAGTGTCAACATATTTTCGCCAC
TTCTCGTCACTCGAACCAGGGTAGATATATCTACATCTAGGCATGACACC
TCCTAGAAAAAAAAGGCTCGTATGTAGGACGTGCCCGGGTTTGTGGTGAG
TATGTACACCCACGCGTGTCAGGGCAATTTTCGTCGTTGCTTATAGCAGT
AGATGACACCCGGTTGATGATGCGTGTGTTACATTGCACCCTGGATAATG
TGGGGAGAGTGCCTGAATCACGGCATGAAAAATGAAAAAGCATGTAGACG
AGCGTCGGCATTATTTGATTGGTCAGCTATCGGTTTCGTTGCAGGACCCA
GGATCTCCCCTGCTCTGCATACTCACACGCTGTTGTTCGCAGCAGCACAG
AGCCCCGAGTGAGTACCCAAAGCTAGTAGTGGAGGCTGCGCGATCCGCCA
GCGAGCCCAACCAAAACTGACACCCCCTTTTCTCTCGCCCACACCACCAC
CTGCTCCTTTGCCGTTCACGTGCGTACCCAACATGGCGGTCTCCAGCATC
GCGCGCAAGCTGTGGCACTCTTTCCTCGACGCGATCAGCCGCTCCAACGC
CGGTCTTGCCTCTGCCACTCCCTCTCCTCCTCCTCCTGCGGCCACACCGG
CGAGGGCAAGCTACAAGGGTGCTGCCGCCCGCTGGCTCCCCGCTTGTCAC
CCGGCGGCCAAGCCGGTGGACGCTGCGCCTTCTGCCGGCGGTACCACTGC
TGCTGCTGCTGCTGCTGCACACCGGGCTGACATTTATATCGCTGCCGCCA
CCACAGCCTGCGCTGCCGCCGCCGCCGCATCCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20955:686..1670+

>mRNA_L-elsbetiae_contig20955.6337.1 ID=mRNA_L-elsbetiae_contig20955.6337.1|Name=mRNA_L-elsbetiae_contig20955.6337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig20955:686..1670+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCTATCCAACCGTTCGTTTGCCCCGGTTTTGTAGCTCCCTGCTGGC
AAGGTCCGGTACGACATGGCCTCCTACACTGGTGGACGAGACCTCAGTGG
CTCTATCCAACCGTTCGTTTGCCCCGGTTTTGTAGCTCCCTGCTGGCAAG
GTCCGGTACGACATGGCCTCCTACACTGGTGGACGAGACCTCAGCATCGC
GCGCAAGCTGTGGCACTCTTTCCTCGACGCGATCAGCCGCTCCAACGCCG
GTCTTGCCTCTGCCACTCCCTCTCCTCCTCCTCCTGCGGCCACACCGGCG
AGGGCAAGCTACAAGGGTGCTGCCGCCCGCTGGCTCCCCGCTTGTCACCC
GGCGGCCAAGCCGGTGGACGCTGCGCCTTCTGCCGGCGGTACCACTGCTG
CTGCTGCTGCTGCTGCACACCGGGCTGACATTTATATCGCTGCCGCCACC
ACAGCCTGCGCTGCCGCCGCCGCCGCATCCACATCGCGCGCAAGCTGTGG
CACTCTTTCCTCGACGCGATCAGCCGCTCCAACGCCGGTCTTGCCTCTGC
CACTCCCTCTCCTCCTCCTCCTGCGGCCACACCGGCGAGGGCAAGCTACA
AGGGTGCTGCCGCCCGCTGGCTCCCCGCTTGTCACCCGGCGGCCAAGCCG
GTGGACGCTGCGCCTTCTGCCGGCGGTACCACTGCTGCTGCTGCTGCTGC
TGCACACCGGGCTGACATTTATATCGCTGCCGCCACCACAGCCTGCGCTG
CCGCCGCCGCCGCATCCA
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