mRNA_L-elsbetiae_contig209.6323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig209.6323.1
Unique NamemRNA_L-elsbetiae_contig209.6323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig209.6323.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.070e-38
Identity = 88/138 (63.77%), Postives = 94/138 (68.12%), Query Frame = 1 
Query:  334 NSIDAGGAYASWGSLVKPFKQQWDHVEGPAAAAWSVGGGGSELASSPLVSGS-----------------VCSVFSAEPRPNSTTAFSVEQCSAQAHPMAVASYVLRVRCAGGAHIVRRTWDDIVSLCTMLSRD-LARS 693
            NS   GG YASW  LVKP KQQWDH+EGP+A A     GG+    S   +                   VCSVFSA+P PNST AFSVEQCSAQAHP AVASYVLRVRCAGGAHIVRRTWDDIV+LCTML RD LARS
Sbjct:  323 NSGGLGGGYASWDVLVKPLKQQWDHIEGPSAEARGGRRGGAGPKPSAYSAXXXXXXXXXXXXXXXXXXXVCSVFSAQPCPNSTAAFSVEQCSAQAHPAAVASYVLRVRCAGGAHIVRRTWDDIVNLCTMLDRDVLARS 460
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig209.6323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE4.070e-3863.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig209contigL-elsbetiae_contig209:12515..13235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size722
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815858.0677211-CDS-L-elsbetiae_contig209:12514..132341622815858.0677211-CDS-L-elsbetiae_contig209:12514..13234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 12515..13234 +
1691683150.2764997-CDS-L-elsbetiae_contig209:12514..132341691683150.2764997-CDS-L-elsbetiae_contig209:12514..13234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig209 12515..13234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig209.6323.1prot_L-elsbetiae_contig209.6323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig209 12515..13234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig209.6323.1

>prot_L-elsbetiae_contig209.6323.1 ID=prot_L-elsbetiae_contig209.6323.1|Name=mRNA_L-elsbetiae_contig209.6323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
AAKENGNRKRNRREVARRAKKPFMRSGSAAAAANAPSAATTSAVAAPSGE
GVSASQAPTKAALRTRYGGSSSKSNRRHRKSRGREGSGASDGSRGSSVAG
RSTTGSVSSTSNSIDAGGAYASWGSLVKPFKQQWDHVEGPAAAAWSVGGG
GSELASSPLVSGSVCSVFSAEPRPNSTTAFSVEQCSAQAHPMAVASYVLR
VRCAGGAHIVRRTWDDIVSLCTMLSRDLARSPPEAAGAAS
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mRNA from alignment at L-elsbetiae_contig209:12515..13235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig209.6323.1 ID=mRNA_L-elsbetiae_contig209.6323.1|Name=mRNA_L-elsbetiae_contig209.6323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=721bp|location=Sequence derived from alignment at L-elsbetiae_contig209:12515..13235+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGAAAGAAAACGGAAACAGGAAGAGAAATCGGCGCGAAGTCGCCCG
GCGGGCGAAGAAGCCCTTCATGCGGAGCGGATCCGCGGCGGCGGCGGCGA
ATGCGCCCTCCGCCGCTACCACGTCTGCGGTGGCGGCACCATCAGGAGAA
GGCGTGTCCGCTTCCCAAGCTCCTACCAAGGCAGCGCTGCGGACGCGGTA
CGGCGGGTCGTCCAGCAAATCCAACCGGCGGCATAGGAAATCCAGAGGGA
GAGAAGGGAGCGGCGCCAGCGACGGCAGCAGAGGCAGCTCGGTGGCGGGT
AGGAGCACCACCGGCAGCGTGAGCAGCACGAGCAACAGCATCGATGCGGG
AGGAGCCTACGCTTCTTGGGGTTCACTCGTGAAGCCCTTCAAGCAGCAGT
GGGACCACGTCGAAGGCCCGGCGGCGGCGGCGTGGTCGGTGGGAGGCGGG
GGCTCGGAGCTGGCCTCCTCGCCGCTCGTGAGCGGAAGTGTCTGCTCCGT
TTTCAGCGCGGAGCCGCGCCCGAACAGCACCACGGCATTCAGCGTGGAGC
AGTGCTCGGCGCAGGCGCACCCGATGGCCGTCGCTTCTTACGTCCTGCGC
GTGCGTTGCGCAGGCGGTGCCCACATCGTCCGCCGTACGTGGGATGACAT
CGTCAGCCTCTGCACCATGCTCAGCCGCGACCTGGCCCGCTCACCGCCCG
AAGCAGCAGGCGCCGCCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig209:12515..13235+

>mRNA_L-elsbetiae_contig209.6323.1 ID=mRNA_L-elsbetiae_contig209.6323.1|Name=mRNA_L-elsbetiae_contig209.6323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig209:12515..13235+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGAAAGAAAACGGAAACAGGAAGAGAAATCGGCGCGAAGTCGCCCG
GCGGGCGAAGAAGCCCTTCATGCGGAGCGGATCCGCGGCGGCGGCGGCGA
ATGCGCCCTCCGCCGCTACCACGTCTGCGGTGGCGGCACCATCAGGAGAA
GGCGTGTCCGCTTCCCAAGCTCCTACCAAGGCAGCGCTGCGGACGCGGTA
CGGCGGGTCGTCCAGCAAATCCAACCGGCGGCATAGGAAATCCAGAGGGA
GAGAAGGGAGCGGCGCCAGCGACGGCAGCAGAGGCAGCTCGGTGGCGGGT
AGGAGCACCACCGGCAGCGTGAGCAGCACGAGCAACAGCATCGATGCGGG
AGGAGCCTACGCTTCTTGGGGTTCACTCGTGAAGCCCTTCAAGCAGCAGT
GGGACCACGTCGAAGGCCCGGCGGCGGCGGCGTGGTCGGTGGGAGGCGGG
GGCTCGGAGCTGGCCTCCTCGCCGCTCGTGAGCGGAAGTGTCTGCTCCGT
TTTCAGCGCGGAGCCGCGCCCGAACAGCACCACGGCATTCAGCGTGGAGC
AGTGCTCGGCGCAGGCGCACCCGATGGCCGTCGCTTCTTACGTCCTGCGC
GTGCGTTGCGCAGGCGGTGCCCACATCGTCCGCCGTACGTGGGATGACAT
CGTCAGCCTCTGCACCATGCTCAGCCGCGACCTGGCCCGCTCACCGCCCG
AAGCAGCAGGCGCCGCCTCGGCCGCGAAAGAAAACGGAAACAGGAAGAGA
AATCGGCGCGAAGTCGCCCGGCGGGCGAAGAAGCCCTTCATGCGGAGCGG
ATCCGCGGCGGCGGCGGCGAATGCGCCCTCCGCCGCTACCACGTCTGCGG
TGGCGGCACCATCAGGAGAAGGCGTGTCCGCTTCCCAAGCTCCTACCAAG
GCAGCGCTGCGGACGCGGTACGGCGGGTCGTCCAGCAAATCCAACCGGCG
GCATAGGAAATCCAGAGGGAGAGAAGGGAGCGGCGCCAGCGACGGCAGCA
GAGGCAGCTCGGTGGCGGGTAGGAGCACCACCGGCAGCGTGAGCAGCACG
AGCAACAGCATCGATGCGGGAGGAGCCTACGCTTCTTGGGGTTCACTCGT
GAAGCCCTTCAAGCAGCAGTGGGACCACGTCGAAGGCCCGGCGGCGGCGG
CGTGGTCGGTGGGAGGCGGGGGCTCGGAGCTGGCCTCCTCGCCGCTCGTG
AGCGGAAGTGTCTGCTCCGTTTTCAGCGCGGAGCCGCGCCCGAACAGCAC
CACGGCATTCAGCGTGGAGCAGTGCTCGGCGCAGGCGCACCCGATGGCCG
TCGCTTCTTACGTCCTGCGCGTGCGTTGCGCAGGCGGTGCCCACATCGTC
CGCCGTACGTGGGATGACATCGTCAGCCTCTGCACCATGCTCAGCCGCGA
CCTGGCCCGCTCACCGCCCGAAGCAGCAGGCGCCGCCTCG
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