mRNA_L-elsbetiae_contig20857.6305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI) HSP 1 Score: 176 bits (445), Expect = 9.890e-54 Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 1 Query: 1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 +VQTDTL++TKRQVDKK TRTVEERDQEIQEEEQGALPEFNE EE DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR Sbjct: 31 EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNE-------EEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 127
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.460e-49 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 1 Query: 1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 +VQTDTL++TKRQVDKK TRTVEERDQEIQEEEQGALPEFNE DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR Sbjct: 363 EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXX-------DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 459
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA) HSP 1 Score: 146 bits (368), Expect = 4.030e-39 Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1 Query: 13 DTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 D +AT++QV+KKQTRTVEERD EI +EE G LPE + ++E+SD++GPIYNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICGDFSY GRR Sbjct: 369 DVWEATRKQVEKKQTRTVEERDAEIADEEAGTLPEVGDA-------DEEDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRR 461
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.900e-33 Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 D D LDA +R VDKKQT+ VEERD E EEE GAL ++ +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR Sbjct: 330 DQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXX----XXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRR 429
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI) HSP 1 Score: 127 bits (319), Expect = 7.070e-33 Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1 Query: 25 ATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 AT+R +K+QTRT+EE+ ++EEE G LP+ E D++ D+EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKCEICG+ SY GRR Sbjct: 230 ATRRHAEKQQTRTLEEKLALLEEEEYGTLPDVEEA--------DDDEDDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRR 317
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S3HNG2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG2_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.250e-31 Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1 Query: 1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 D+ + ++AT R +K+QTRT EER+ E++EEE G H T + E+ D++ P+YNPLNLPLGWDGKPIPYW+YKLHGLGVE+KC+ICGD SY GRR Sbjct: 323 DLMSSVVNATVRHAEKQQTRTAEEREAELREEEFGLAQLPQSAHGDGTKK-GEDDDDDAPVYNPLNLPLGWDGKPIPYWMYKLHGLGVEYKCQICGDHSYWGRR 425
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: F0W4M0_9STRA (Splicing factor 3A putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M0_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.600e-30 Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = 1 Query: 10 TDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 T+ + AT ++ KQTRT EE EI+EE++G L +++ T E +++ +E+ P YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR Sbjct: 345 TEVIHATIAYLEMKQTRTAEELQAEIEEEQEGVL---SDIDAENTGEHEDDDEEDTPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRR 442
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A1E3IUY8_9TREE (Splicing factor 3A subunit 3 n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3IUY8_9TREE) HSP 1 Score: 121 bits (304), Expect = 4.060e-30 Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1 Query: 19 LDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 L T+ +V++K T +ER+QEI+E+E+G N V V +EDEE +++G IYNPL LPLGWDGKPIPYWLYKLHGLGVEFKCEIC + Y GR+ Sbjct: 344 LSDTRNEVERKMALTAKEREQEIEEQEEG-----NAVEEVDLGQEDEEEEDDGKIYNPLKLPLGWDGKPIPYWLYKLHGLGVEFKCEICSNVIYNGRK 436
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S2W3N3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA) HSP 1 Score: 120 bits (302), Expect = 7.880e-30 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 13 DTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEF---NEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 D ++ATKR V+K+QT+ VEER E++EEE G + + + EED ++GP+YNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICG+ SY GRR Sbjct: 336 DVVEATKRHVEKRQTQLVEERAAELEEEEFGTMADQIAGEDGTGGLDDEEDXXXXDDGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGNQSYWGRR 438
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A024UI91_9STRA (C2H2-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI91_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.370e-29 Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1 Query: 10 TDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312 T+ + AT ++ KQTRT EE EI E+E+GAL + + V PT+ +D+E P YNPLNLPLGWDGKPIPYWLYKLHGLG+EFKCEICG+ SY GRR Sbjct: 318 TEVVHATITFLELKQTRTPEELQAEIYEDEEGALSDVD-VDNDPTNADDDEQ----PFYNPLNLPLGWDGKPIPYWLYKLHGLGIEFKCEICGNHSYWGRR 413 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20857.6305.1 >prot_L-elsbetiae_contig20857.6305.1 ID=prot_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp MCRRTRWTRRRDRWTRSRRGRSRRGTRRSRRRSRGRSRSSTRYIWYPRARback to top mRNA from alignment at L-elsbetiae_contig20857:1240..2210- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig20857.6305.1 ID=mRNA_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig20857:1240..2210- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig20857:1240..2210- >mRNA_L-elsbetiae_contig20857.6305.1 ID=mRNA_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig20857:1240..2210- (Laminarionema elsbetiae ELsaHSoW15)back to top |