mRNA_L-elsbetiae_contig20857.6305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20857.6305.1
Unique NamemRNA_L-elsbetiae_contig20857.6305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 9.890e-54
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            +VQTDTL++TKRQVDKK TRTVEERDQEIQEEEQGALPEFNE       EE    DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR
Sbjct:   31 EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNE-------EEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 127          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.460e-49
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            +VQTDTL++TKRQVDKK TRTVEERDQEIQEEEQGALPEFNE             DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR
Sbjct:  363 EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXX-------DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 459          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.030e-39
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:   13 DTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            D  +AT++QV+KKQTRTVEERD EI +EE G LPE  +        ++E+SD++GPIYNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICGDFSY GRR
Sbjct:  369 DVWEATRKQVEKKQTRTVEERDAEIADEEAGTLPEVGDA-------DEEDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRR 461          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.900e-33
Identity = 66/104 (63.46%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            D   D LDA +R VDKKQT+ VEERD E  EEE GAL   ++              +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR
Sbjct:  330 DQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXX----XXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRR 429          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 127 bits (319), Expect = 7.070e-33
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   25 ATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            AT+R  +K+QTRT+EE+   ++EEE G LP+  E         D++ D+EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKCEICG+ SY GRR
Sbjct:  230 ATRRHAEKQQTRTLEEKLALLEEEEYGTLPDVEEA--------DDDEDDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRR 317          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S3HNG2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.250e-31
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 DVQTDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            D+ +  ++AT R  +K+QTRT EER+ E++EEE G        H   T +  E+ D++ P+YNPLNLPLGWDGKPIPYW+YKLHGLGVE+KC+ICGD SY GRR
Sbjct:  323 DLMSSVVNATVRHAEKQQTRTAEEREAELREEEFGLAQLPQSAHGDGTKK-GEDDDDDAPVYNPLNLPLGWDGKPIPYWMYKLHGLGVEYKCQICGDHSYWGRR 425          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: F0W4M0_9STRA (Splicing factor 3A putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.600e-30
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   10 TDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            T+ + AT   ++ KQTRT EE   EI+EE++G L   +++    T E +++ +E+ P YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR
Sbjct:  345 TEVIHATIAYLEMKQTRTAEELQAEIEEEQEGVL---SDIDAENTGEHEDDDEEDTPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRR 442          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A1E3IUY8_9TREE (Splicing factor 3A subunit 3 n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3IUY8_9TREE)

HSP 1 Score: 121 bits (304), Expect = 4.060e-30
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   19 LDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            L  T+ +V++K   T +ER+QEI+E+E+G     N V  V   +EDEE +++G IYNPL LPLGWDGKPIPYWLYKLHGLGVEFKCEIC +  Y GR+
Sbjct:  344 LSDTRNEVERKMALTAKEREQEIEEQEEG-----NAVEEVDLGQEDEEEEDDGKIYNPLKLPLGWDGKPIPYWLYKLHGLGVEFKCEICSNVIYNGRK 436          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A7S2W3N3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.880e-30
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   13 DTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEF---NEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            D ++ATKR V+K+QT+ VEER  E++EEE G + +     +       EED    ++GP+YNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICG+ SY GRR
Sbjct:  336 DVVEATKRHVEKRQTQLVEERAAELEEEEFGTMADQIAGEDGTGGLDDEEDXXXXDDGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGNQSYWGRR 438          
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Match: A0A024UI91_9STRA (C2H2-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI91_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.370e-29
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   10 TDTLDATKRQVDKKQTRTVEERDQEIQEEEQGALPEFNEVHMVPTSEEDEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 312
            T+ + AT   ++ KQTRT EE   EI E+E+GAL + + V   PT+ +D+E     P YNPLNLPLGWDGKPIPYWLYKLHGLG+EFKCEICG+ SY GRR
Sbjct:  318 TEVVHATITFLELKQTRTPEELQAEIYEDEEGALSDVD-VDNDPTNADDDEQ----PFYNPLNLPLGWDGKPIPYWLYKLHGLGIEFKCEICGNHSYWGRR 413          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20857.6305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G993_ECTSI9.890e-5485.58Matrin-type domain-containing protein n=1 Tax=Ecto... [more]
D7FUU5_ECTSI1.460e-4983.65Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A836CE40_9STRA4.030e-3970.00Matrin-type domain-containing protein n=1 Tax=Trib... [more]
A0A7S2HV93_9STRA2.900e-3363.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812TNG2_SYMMI7.070e-3363.54SF3A3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3HNG2_9STRA5.250e-3157.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0W4M0_9STRA1.600e-3058.42Splicing factor 3A putative n=1 Tax=Albugo laibach... [more]
A0A1E3IUY8_9TREE4.060e-3059.18Splicing factor 3A subunit 3 n=2 Tax=Cryptococcus ... [more]
A0A7S2W3N3_9STRA7.880e-3059.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024UI91_9STRA2.370e-2961.39C2H2-type domain-containing protein n=2 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20857contigL-elsbetiae_contig20857:1240..2210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20857.6305.1prot_L-elsbetiae_contig20857.6305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20857 1240..2209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.7285788-CDS-L-elsbetiae_contig20857:1239..14321622815856.7285788-CDS-L-elsbetiae_contig20857:1239..1432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20857 1240..1432 -
1691683149.4053507-CDS-L-elsbetiae_contig20857:1239..14321691683149.4053507-CDS-L-elsbetiae_contig20857:1239..1432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20857 1240..1432 -
1622815856.7425933-CDS-L-elsbetiae_contig20857:2063..22091622815856.7425933-CDS-L-elsbetiae_contig20857:2063..2209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20857 2064..2209 -
1691683149.4142025-CDS-L-elsbetiae_contig20857:2063..22091691683149.4142025-CDS-L-elsbetiae_contig20857:2063..2209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20857 2064..2209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815856.7538877-UTR-L-elsbetiae_contig20857:2209..22101622815856.7538877-UTR-L-elsbetiae_contig20857:2209..2210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20857 2210..2210 -
1691683149.4224613-UTR-L-elsbetiae_contig20857:2209..22101691683149.4224613-UTR-L-elsbetiae_contig20857:2209..2210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20857 2210..2210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20857.6305.1

>prot_L-elsbetiae_contig20857.6305.1 ID=prot_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MCRRTRWTRRRDRWTRSRRGRSRRGTRRSRRRSRGRSRSSTRYIWYPRAR
KTRRATKKGRSTIPSTSPSGGTASRSPTGSTSCTGSGSSSSARSAATSAT
RVGGVCVCVCEC*
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mRNA from alignment at L-elsbetiae_contig20857:1240..2210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20857.6305.1 ID=mRNA_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig20857:1240..2210- (Laminarionema elsbetiae ELsaHSoW15)
GATGTGCAGACGGACACGTTGGACGCGACGAAGAGACAGGTGGACAAGAA GCAGACGAGGACGGTCGAGGAGAGGGACCAGGAGATCCAGGAGGAGGAGC AGGGGGCGCTCCCGGAGTTCAACGAGGTACATATGGTACCCACGAGCGTA TCCCCCTAACCGTAACCGTAGCCGTAACCGTAACTCTCACCCTCGTGGCA AAGAAGCCCTTCGAGCGCTGGAAATAAACAGGAATAAAAAAAAAAATACA AAAAAATGGTGGGTGTGATGCGACGGCGGCGGTGCCGCTCCCCCCTCCCT GGCTGGCCCTTTACGAAATGACGGGACCCCTCACGTGTAGGGTAATTTTG TCCCGCGGGTAACCTACACAGTTGTTGTAGGGCGAAGAGGGGTGATGGTC GTTCCCATGTACTCACGGTGGGTGCCCCGCCGGGAATGTCTGCGGCGGCC GGGTACCCCCGGGTAGTTTGCTCGGCGAACGCCGGGGTGGTGGTCTTCAT ATTACGTACTCGGTGGTGTCCCGAACCACACAATAAATAAATAAATAAAT AAGTCTCTTTATCTCTTGTACACATCAATCAAAATCAATCAATCACCGTG TGTTGTTGTGTCTTTGCGTTTTGTATCTGTGCCGCAGCAAATACTTCGTA TTGCCGTCTTGTCACACGCACGCACGCACGCGCGCATGCACGTGTCTTTT GTTGTGATTTCTGCTTCTACATATGTATACGTTATCACACACGAAGTACA CTTACACCCGTATGATGTGATACCTCAGGAGGAAGACGAGGAGAGCGACG AAGAAGGGCCGATCTACAATCCCCTCAACCTCCCCCTCGGGTGGGACGGC AAGCCGATCCCCTACTGGCTCTACAAGCTGCACGGGCTCGGGGTCGAGTT CAAGTGCGAGATCTGCGGCGACTTCAGCTACAAGGGTCGGAGGTGTGTGT GTGTGTGTGTGTGAGTGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20857:1240..2210-

>mRNA_L-elsbetiae_contig20857.6305.1 ID=mRNA_L-elsbetiae_contig20857.6305.1|Name=mRNA_L-elsbetiae_contig20857.6305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig20857:1240..2210- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCAGACGGACACGTTGGACGCGACGAAGAGACAGGTGGACAAGAAG
CAGACGAGGACGGTCGAGGAGAGGGACCAGGAGATCCAGGAGGAGGAGCA
GGGGGCGCTCCCGGAGTTCAACGAGGTACATATGGTACCCACGAGCATGT
GCAGACGGACACGTTGGACGCGACGAAGAGACAGGTGGACAAGAAGCAGA
CGAGGACGGTCGAGGAGAGGGACCAGGAGATCCAGGAGGAGGAGCAGGGG
GCGCTCCCGGAGTTCAACGAGGTACATATGGTACCCACGAGCGAGGAAGA
CGAGGAGAGCGACGAAGAAGGGCCGATCTACAATCCCCTCAACCTCCCCC
TCGGGTGGGACGGCAAGCCGATCCCCTACTGGCTCTACAAGCTGCACGGG
CTCGGGGTCGAGTTCAAGTGCGAGATCTGCGGCGACTTCAGCTACAAGGG
TCGGAGGTGTGTGTGTGTGTGTGTGTGAGTGCTAGGAGGAAGACGAGGAG
AGCGACGAAGAAGGGCCGATCTACAATCCCCTCAACCTCCCCCTCGGGTG
GGACGGCAAGCCGATCCCCTACTGGCTCTACAAGCTGCACGGGCTCGGGG
TCGAGTTCAAGTGCGAGATCTGCGGCGACTTCAGCTACAAGGGTCGGAGG
TGTGTGTGTGTGTGTGTGTGAGTGCTAG
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