mRNA_L-elsbetiae_contig2080.6290.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2080.6290.1
Unique NamemRNA_L-elsbetiae_contig2080.6290.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2080.6290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2080contigL-elsbetiae_contig2080:14988..15695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2080.6290.1prot_L-elsbetiae_contig2080.6290.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2080 15090..15458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.9841566-UTR-L-elsbetiae_contig2080:14987..150891622815854.9841566-UTR-L-elsbetiae_contig2080:14987..15089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 14988..15089 +
1691683148.1756265-UTR-L-elsbetiae_contig2080:14987..150891691683148.1756265-UTR-L-elsbetiae_contig2080:14987..15089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 14988..15089 +
1622815855.0144265-UTR-L-elsbetiae_contig2080:15458..156951622815855.0144265-UTR-L-elsbetiae_contig2080:15458..15695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 15459..15695 +
1691683148.1944113-UTR-L-elsbetiae_contig2080:15458..156951691683148.1944113-UTR-L-elsbetiae_contig2080:15458..15695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2080 15459..15695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815854.9999611-CDS-L-elsbetiae_contig2080:15089..154581622815854.9999611-CDS-L-elsbetiae_contig2080:15089..15458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 15090..15458 +
1691683148.1847482-CDS-L-elsbetiae_contig2080:15089..154581691683148.1847482-CDS-L-elsbetiae_contig2080:15089..15458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2080 15090..15458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2080.6290.1

>prot_L-elsbetiae_contig2080.6290.1 ID=prot_L-elsbetiae_contig2080.6290.1|Name=mRNA_L-elsbetiae_contig2080.6290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MAGEQEETHYETAGDSGVTGREKLRSGTVVCGTPHRGGGQNPHDSKICTC
SSMAAATNNGLPIFTPPEPPHPHPHPHPKRLLFWPRALGQKGNAHPSRPT
TCRNKNSNVWCVAPHKKKTDLC*
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mRNA from alignment at L-elsbetiae_contig2080:14988..15695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2080.6290.1 ID=mRNA_L-elsbetiae_contig2080.6290.1|Name=mRNA_L-elsbetiae_contig2080.6290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:14988..15695+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGTTTCGATAAAAAAAATTAACATGTATGTATGTTAGCTGAAGACGAA
AACCCTGCGTAGACTACTGGATCGGAATCGTCGGAGAAGACACGACGAAG
CGATGGCCGGGGAACAAGAGGAAACGCACTACGAAACCGCCGGAGATTCA
GGCGTGACAGGACGGGAAAAGCTCAGGAGCGGCACCGTGGTGTGTGGAAC
GCCACACAGGGGGGGGGGGCAAAATCCACATGATTCCAAAATATGCACCT
GCTCTTCCATGGCCGCCGCCACCAACAACGGCCTCCCAATCTTTACACCT
CCTGAACCTCCCCACCCACACCCACACCCACACCCCAAGCGCTTGCTCTT
CTGGCCTCGAGCCTTGGGGCAAAAAGGAAATGCCCACCCTTCACGCCCCA
CAACATGTCGTAACAAAAACTCCAACGTTTGGTGTGTGGCTCCACACAAA
AAAAAAACTGACCTATGTTAAGGTAAAAAACGCTTACCAGTTTTCCCGAG
GTCCCGAATAAAACACGAGAAAAAGTGGAGCGTGTGTGTGTGTGCTGCGC
CCTCGCCTTCCCGTTCGTTGCACGTACCTACGTGCCTCGCGCCGCGCGAA
GCAGCGTCCCCGAAAAAAGGTCCCCAGAGTTTTCAAAACGCCCACTTTCA
AGAAAAAAATCAGCTCCGCACCCCAAAGCCGCGTCTCCTCAAGACCAGAA
AACCCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2080:14988..15695+

>mRNA_L-elsbetiae_contig2080.6290.1 ID=mRNA_L-elsbetiae_contig2080.6290.1|Name=mRNA_L-elsbetiae_contig2080.6290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig2080:14988..15695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGGGAACAAGAGGAAACGCACTACGAAACCGCCGGAGATTCAGG
CGTGACAGGACGGGAAAAGCTCAGGAGCGGCACCGTGGTGTGTGGAACGC
CACACAGGGGGGGGGGGCAAAATCCACATGATTCCAAAATATGCACCTGC
TCTTCCATGGCCGCCGCCACCAACAACGGCCTCCCAATCTTTACACCTCC
TGAACCTCCCCACCCACACCCACACCCACACCCCAAGCGCTTGCTCTTCT
GGCCTCGAGCCTTGGGGCAAAAAGGAAATGCCCACCCTTCACGCCCCACA
ACATGTCGTAACAAAAACTCCAACGTTTGGTGTGTGGCTCCACACAAAAA
AAAAACTGACCTATGTTAAATGGCCGGGGAACAAGAGGAAACGCACTACG
AAACCGCCGGAGATTCAGGCGTGACAGGACGGGAAAAGCTCAGGAGCGGC
ACCGTGGTGTGTGGAACGCCACACAGGGGGGGGGGGCAAAATCCACATGA
TTCCAAAATATGCACCTGCTCTTCCATGGCCGCCGCCACCAACAACGGCC
TCCCAATCTTTACACCTCCTGAACCTCCCCACCCACACCCACACCCACAC
CCCAAGCGCTTGCTCTTCTGGCCTCGAGCCTTGGGGCAAAAAGGAAATGC
CCACCCTTCACGCCCCACAACATGTCGTAACAAAAACTCCAACGTTTGGT
GTGTGGCTCCACACAAAAAAAAAACTGACCTATGTTAA
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