prot_L-elsbetiae_contig208.6281.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig208.6281.1
Unique Nameprot_L-elsbetiae_contig208.6281.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length161
Homology
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BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Match: A0A6H5JK33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK33_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 4.930e-71
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:    2 MTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFSAQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLGVVCWVISAYALISLRMGMWTHNLLLFDAETKLIDGKRSAYIPAPTTFRGWL 141
            MTLVFALEMFATIFFSIISFYAKQAFNYGSTNN RTARF+YHVRWITFS+QACYTIG LLF+ GILLEAT GYD YWAL GV P+++L VVCW  +A ALISLRMG+W ++LLLFDAE+KL+D KRS +IPAP +FR W 
Sbjct:   67 MTLVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWFSAANALISLRMGLWMNSLLLFDAESKLVDQKRSTFIPAPASFREWF 206
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BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Match: D7FS41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.620e-42
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0 
Query:    2 MTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFSAQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLG 90
            MT+VFALEMFATIFFSIISFYAKQAFNYGSTNN RTARF+YHVRWITFS+QACYTIG LLF+ GILLEAT GYD YWAL GV P+++LG
Sbjct:  172 MTMVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILG 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig208.6281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK33_9PHAE4.930e-7177.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS41_ECTSI2.620e-4284.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 67..77
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 103..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 81..103
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 4..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig208contigL-elsbetiae_contig208:10522..12496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig208.6281.1mRNA_L-elsbetiae_contig208.6281.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig208 9901..12611 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig208.6281.1 ID=prot_L-elsbetiae_contig208.6281.1|Name=mRNA_L-elsbetiae_contig208.6281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNQRTARFLYHVRWITFS
AQACYTIGFLLFLTGILLEATAGYDEYWALVGVVPILVLGVVCWVISAYA
LISLRMGMWTHNLLLFDAETKLIDGKRSAYIPAPTTFRGWLDRDKGDDGG
GDSDSNDNPC*
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