mRNA_L-elsbetiae_contig2065.6225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2065.6225.1 vs. uniprot
Match: D7FNS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS0_ECTSI) HSP 1 Score: 573 bits (1478), Expect = 2.250e-188 Identity = 414/838 (49.40%), Postives = 465/838 (55.49%), Query Frame = 1 Query: 43 GGETVAPAAGTYQVGIPNRERGYNWGVSPPPP--PMGLSEQYMTPHARFPVTSPVVAAQVLSFRLKGGKSRSSSXXXXXXXGKQRATGGARSGFLNVFAFLHADGMVRLRDTDGEEVVAFDAGHHRGSXXXXXXXXXXXXXXXXXDGVSPEKSAAATE--------PVVVVGLTVDTSEADPVVVTAGADGTARVHALTVHYRGKQVAGAGARGGRSRRESTDKRKEAPTGDKSGEAGSGSRPREQQEETPPRVAPQTEEAAVEDKGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVPPTPPATTMGVGIAVKFKACLGSACDSSGGGSRLQS----AETAEDDVGAGAGATXAGARSV-----PSPMETATV-TSMDAFYHRSLGTTVVVAGYSSGGVRFFHAGNGTELGTADTGSSAVLAVKRGGQSIAFSDGEDVHFASAAKFTRTVGRVCRGGRRGRSLSGGSG--DRAVVTALAFDAVSTGVLYVGFGTGDVMAYESRLQEADGSYTCLPSHRLPXXXXXXXXXXXXXXXXXXXXXXXDGGW---SGGGCESISTVRGYAIVSQGPLLSVYNTTDEASRLLFTRRAHTTRSAAVTVGQEDSGLCGESTLAAAXXXXXXXXXXXXXXXEGGGVAGXXVGTS-----AXGSRWSVMSSSASGEVLVAEGSRCSAEIIVHRAVLPYERNGPDISWMRVPVLLLGLLVVAITQVYSRRAAKTAVGRTGRKK--RGGKGWGGDGFSDXDDGGGG----LSVDSLAHLTGGLXXXXXXXXXXXXX--GSSRSGPREP-----------SSRYPPPEQDYGNPWDQEGSD 2409 G + AP + T Q N G WG S PP P+G EQYMTPHA+FP +S VVA ++ SFRLKGG XXXXXX G RSGFLNVFA+LHADGMVRLRDTD EE++ FDAGH R G E + +A P VVG+T D+SE+ PV+VTAGADGTARVHAL V+YRG+QVAG G RGGRS + + +RK+A D S + G AP+ + E KG PP AT MGVG+ V+FK CLGSAC S G S+L+ ET VG G G A SV P E ATV TSMDAF+HRSLGTTVV+AGYSSGGV F+HAGNGT+L + DTGSSAVLAVKRGGQSIAF+DGEDVHFAS+ KFTR GRVCRGGRR + AVVTALAFDAVSTGVLYVGFGTGDVMAY+SR+QE D SY CLPS+RLP G GGGC+SISTVRGYAIVS G LLSVYNTTD A RLLFT H T +AA+ G CG GGGV XX + G WSVMSSS SGEVLV E SRCSAE++VHRAVLPYERNGPD+SW+R PVLLLGL VVAITQVYSRRAA A GRT RKK G +GW G G SD S D+LA L L GS R SSR P P Q YG+PW EGSD Sbjct: 43 GRDVPAPTSDTRQ----NTGLGPKWGTSTPPSQLPIGYFEQYMTPHAKFPSSSAVVATEMFSFRLKGGXXX----XXXXXXXXXXXXXGIRSGFLNVFAYLHADGMVRLRDTDAEEILVFDAGHTRREASPSLTTADSSSSATADAGSLKEAAVSAAXXXXAETATPAGVVGMTADSSESGPVLVTAGADGTARVHALAVYYRGRQVAGVGVRGGRS--DPSGRRKKAEASDPSSSSTRGE-------------APRRGTGSSEKKGDHGGDRPHGS------------------------------PPXXXATAMGVGVTVEFKTCLGSACRSPDGLSQLRGMGGDGETVS--VGNGGGGDQETAGSVSGSLPPQGEEMATVITSMDAFFHRSLGTTVVIAGYSSGGVSFYHAGNGTQLASVDTGSSAVLAVKRGGQSIAFTDGEDVHFASSTKFTRAPGRVCRGGRRXXXXXXXXXXXEPAVVTALAFDAVSTGVLYVGFGTGDVMAYDSRVQEMDSSYACLPSYRLPPPLPQQRPSPHADPSTATAAGDGGSGGILLGGGGCDSISTVRGYAIVSHGGLLSVYNTTDHAGRLLFT--THATAAAALAEGARTEDHCGAPLSPGTES-------------RGGGVGXXXXXXXXXXXPSGGRTWSVMSSSGSGEVLVVEASRCSAEVVVHRAVLPYERNGPDMSWVRFPVLLLGLFVVAITQVYSRRAANNAAGRTSRKKGRSGSRGWRGAGLSDEXXXXXXXXXXFSADALAQLRDDLSERTSRRRDWGGRRLGSGRXXXXXXXXXXXXXXXXXSSRLPAPRQGYGDPWADEGSD 810
BLAST of mRNA_L-elsbetiae_contig2065.6225.1 vs. uniprot
Match: A0A6H5L6B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B1_9PHAE) HSP 1 Score: 541 bits (1395), Expect = 9.550e-175 Identity = 440/844 (52.13%), Postives = 492/844 (58.29%), Query Frame = 1 Query: 58 APAAGTYQVGIPNRERGYNWGVSPPPP--PMGLSEQYMTPHARFPVTSPVVAAQVLSFRLKGGKSRSSSXXXXXXXGKQRATGGARSGFLNVFAFLHADGMVRLRDTDGEEVVAFDAGHHRGSXXXXXXXXXXXXXXXXXDGVSPEKSAAA----------TE-PVVVVGLTVDTSEADPVVVTAGADGTARVHALTVHYRGKQVAGAGARGGRSRRESTDKRKEAPTGDKSGEAGSGSRPREQQEETPPRVAPQTEEAAVEDKGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVPPTPPATTMGVGIAVKFKACLGSACDSSGGGSRLQSAETAEDDVGAGAGA---TXAGARS--VPSPMETATV-TSMDAFYHRSLGTTVVVAGYSSGGVRFFHAGNGTELGTADTGSSAVLAVKRGGQS----IAFSDGEDVHFASAAKFTRTVGRVCRGGRRGRSLSGGSG----------DRAVVTALAFDAVSTGVLYVGFGTGDVMAYESRLQEADGSYTCLPSHRLPXXXXXXXXXXXXXXXXXXXXXXXDGG---------WSGGGCESISTVRGYAIVSQGPLLSVYNTTDEASRLLFTRRAHTTRSAAVTVGQEDSGLCGESTLAAAXXXXXXXXXXXXXXXEGGGVAGXXVGTSAXGSRWSVMSSSASGEVLVAEGSRCSAEIIVHRAVLPYERNGPDISWMRVPVLLLGLLVVAITQVYSRRAAKTAVGRTGRKK--RGGKGWGGDGFSDXDD-GGGGLSVDSLAHLTGGLXXXXXXXXXXXXXGSSRSG---------------PREPSSRYPPPEQDYGNPWDQEGSD 2409 APA+ T Q N G+ WG S PP P G EQYMTPHA+FP +S VVA ++ SFRLKGG S S S G + GG RSGFLNVFA+LHADGMVRLRDTD EE++ FDAGH R XXXXXXXXXXX TE P VVG+T D+SE+ PV+VTAGADGTARVHAL V+YRG+QVAG G RGGRS + + +RK+A D S XXXXXXXXXXXXXXXXXXXXXXXXX PP MGVG+ V+FK CLGSAC + G +L+S + V G G AG+ S +P ETATV TSMDAF+HRSLGTTVV+AGYSSGGV F+HAGNGTEL DTGSSAVLAVKRGGQ+ IAF+ GEDVHFAS++KFTR GRVCRGGR SGG +RAVVTALAFDAVSTGVLYVGFGTGDVMAY+SR+QE D SY CLPS+RLP XXXXXX W GGC+SISTVRGYAIVS G LLS YNTTD A RLLFT A +AA+ G CG A T + G WSVMSS SGEVLV E SRCSAE++VH+AVLPYERNGPD+SW+R PVLLLGLLVVAITQVYSRRAA AVGRT R K G +G G G SD DD GGGG S D+LA L L RSG SR+P Q YG+PW EGSD Sbjct: 130 APASDTRQ----NTGLGHKWGTSTPPSQLPTGYYEQYMTPHAKFPSSSAVVATEMFSFRLKGGYS-SKSRRSFSGGG---SGGGVRSGFLNVFAYLHADGMVRLRDTDAEEILVFDAGHARREALPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTETPAAVVGMTADSSESGPVLVTAGADGTARVHALAVYYRGRQVAGVGVRGGRS--DHSGRRKKAEASDPSSSTS-------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXGDRLHGSPPXXXXXXMGVGVTVEFKTCLGSACRGTDGLLQLRSMGGDGETVSVGNGGGDQETAGSMSGSLPPQGETATVITSMDAFFHRSLGTTVVIAGYSSGGVSFYHAGNGTELAFIDTGSSAVLAVKRGGQARNRAIAFTVGEDVHFASSSKFTRAPGRVCRGGR----WSGGXXXXXXXXXXXXERAVVTALAFDAVSTGVLYVGFGTGDVMAYDSRVQEMDSSYACLPSYRLPPPLPQQRSSPHADPSTSXXXXXXXXXXXXXXXXXXW--GGCDSISTVRGYAIVSHGGLLSAYNTTDHAGRLLFTTHA---AAAALAEGARTEDHCGAPLSPGTESRRSGVGADAL-------AAAAEEATPSGGRTWSVMSSG-SGEVLVVEASRCSAEVVVHKAVLPYERNGPDMSWVRFPVLLLGLLVVAITQVYSRRAASNAVGRTSRNKGRSGSRGLRGAGLSDEDDEGGGGFSADALAQLRDDLNERTSRRRDWGGR-RLRSGRGSXXXXXXXXXXXXXXXXXSRFPASRQGYGDPWANEGSD 908 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2065.6225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2065.6225.1 >prot_L-elsbetiae_contig2065.6225.1 ID=prot_L-elsbetiae_contig2065.6225.1|Name=mRNA_L-elsbetiae_contig2065.6225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=757bp MGLSEQYMTPHARFPVTSPVVAAQVLSFRLKGGKSRSSSGSSSSSSGKQRback to top mRNA from alignment at L-elsbetiae_contig2065:3636..8989+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2065.6225.1 ID=mRNA_L-elsbetiae_contig2065.6225.1|Name=mRNA_L-elsbetiae_contig2065.6225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5354bp|location=Sequence derived from alignment at L-elsbetiae_contig2065:3636..8989+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2065:3636..8989+ >mRNA_L-elsbetiae_contig2065.6225.1 ID=mRNA_L-elsbetiae_contig2065.6225.1|Name=mRNA_L-elsbetiae_contig2065.6225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4542bp|location=Sequence derived from alignment at L-elsbetiae_contig2065:3636..8989+ (Laminarionema elsbetiae ELsaHSoW15)back to top |