mRNA_L-elsbetiae_contig20469.6166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20469.6166.1
Unique NamemRNA_L-elsbetiae_contig20469.6166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: D7G4Z1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.050e-38
Identity = 84/130 (64.62%), Postives = 92/130 (70.77%), Query Frame = 2
Query:    2 ATATTEGVQVATIVSGAGSSRSGEPASVVVAAVDNPHTNGSGXXXXXXXXXGKDSKKQTVGLIR----GRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            ATATTEGV++ATIVSG   S+ GEP   V+ AV NP+  G      XXXXX         G  +    G G +GS IPVALYR  NARYTLVYSHGNATDIGAMHDRC+GIAEAVGVNVL YDYTGYGRA
Sbjct:    9 ATATTEGVEIATIVSGVSGSQCGEP---VLTAVANPNNKGKSNSKAXXXXXXXXXXXXXGGFAKVGKIGGGGRGSTIPVALYRTANARYTLVYSHGNATDIGAMHDRCAGIAEAVGVNVLAYDYTGYGRA 135          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.890e-36
Identity = 90/136 (66.18%), Postives = 98/136 (72.06%), Query Frame = 2
Query:    2 ATATTEGVQVATIVSGAGSSRSGEPASVVVAAVDNPHTNG------SGXXXXXXXXXGKDSKKQTVGLIR----GRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            ATATTEGV++ATIVSG   SR GEP   V+AAV NP   G      +GXXXXXXXXX         G  +    G G +GS IPVALYR  NARYTL+YSHGNATDIGAMHDRC+GIAEAVGVNVL YDYTGYGRA
Sbjct:   57 ATATTEGVEIATIVSGVSGSRCGEP---VLAAVANPKPKGKRNSKAAGXXXXXXXXXXXXXXXXXGGFAKVGKIGGGGRGSTIPVALYRTANARYTLIYSHGNATDIGAMHDRCAGIAEAVGVNVLAYDYTGYGRA 189          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A7S2XWM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWM1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.780e-17
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  185 LIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            ++  R +K   IPV LYR  NA+YTL++SHGNATD+GAMHDR  G+A ++ +N++ YDYTGYG +
Sbjct:   67 IVTTRRRKN--IPVVLYRYRNAKYTLIFSHGNATDLGAMHDRFVGLAMSLQINIVGYDYTGYGHS 129          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-14
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  173 QTVGLIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            QT+ ++  R KK  VI   LYR   A  T+VYSHGNATD+GAMHDR  G+A  + VNVL YDYTGYG++
Sbjct:   64 QTI-ILNTRRKK--VITAVLYRAEGASKTIVYSHGNATDLGAMHDRYVGLATILKVNVLAYDYTGYGQS 129          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A835YXY1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.710e-14
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  185 LIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYG 373
            +++ + ++   + V  Y+ P ARYTL++SHGNATD+GAMHDR  G+ + +GV+V+ YDYTGYG
Sbjct:   70 VVKVKTRRKKTVVVLWYKSPYARYTLLHSHGNATDLGAMHDRYVGLVQNLGVSVVAYDYTGYG 132          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A024U4X5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4X5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.590e-12
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  176 TVGLIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            T  L   R K+G  IP  ++R P A +T++YSHGNATD G M  R   ++  + VNV+ YDYTGYG A
Sbjct:   60 TASLAVVRTKRGQEIPCFVFRHPEATFTMIYSHGNATDCGGMFLRYLSLSRELKVNVVGYDYTGYGGA 127          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A7S3H8Y9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Y9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.310e-12
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  164 SKKQTVGLIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYG 373
            S+   V L+  R K  + IPV +   PNA+YT++YSHGNATD GAM      I+E + VNV+ YDYTGYG
Sbjct:   60 SQNIKVELLTSRTK--TKIPVVVLTHPNAKYTIIYSHGNATDCGAMLPMYKMISEFLKVNVVGYDYTGYG 127          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A024U6Q3_9STRA (Hydrolase_4 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6Q3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.020e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  176 TVGLIRGRGKKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            T  L   R K+G  IP  ++R P A +T++YSHGNATD G M  R   ++  + VNV+ YDYTGYG A
Sbjct:   60 TASLAVVRTKRGQEIPCFVFRHPEATFTMIYSHGNATDCGGMFLRYLSLSRELKVNVVGYDYTGYGGA 127          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A067CL46_SAPPC (Hydrolase_4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL46_SAPPC)

HSP 1 Score: 69.7 bits (169), Expect = 1.520e-11
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  203 KKGSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            + G+ +P  ++R P A +TL++SHGNATD GAM+ R   ++  + VNV+ YDY+GYG A
Sbjct:   75 RPGNEVPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYIALSRELAVNVVAYDYSGYGAA 133          
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Match: A0A1V9ZDL9_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDL9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.520e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  209 GSVIPVALYRQPNARYTLVYSHGNATDIGAMHDRCSGIAEAVGVNVLVYDYTGYGRA 379
            G+ IP  ++R P A +TL++SHGNATD GAM+ R   ++  + VNV+ YDY+GYG A
Sbjct:   77 GNEIPCFVFRYPEAEFTLIFSHGNATDCGAMYSRYLALSRELSVNVVAYDYSGYGAA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20469.6166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z1_ECTSI2.050e-3864.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNT2_9PHAE7.890e-3666.18Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2XWM1_9STRA4.780e-1755.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6S9I0E5_HETAK1.260e-1457.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YXY1_9STRA1.710e-1450.79P-loop containing nucleoside triphosphate hydrolas... [more]
A0A024U4X5_9STRA5.590e-1248.53Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S3H8Y9_9STRA9.310e-1251.43Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A024U6Q3_9STRA1.020e-1148.53Hydrolase_4 domain-containing protein n=2 Tax=Apha... [more]
A0A067CL46_SAPPC1.520e-1147.46Hydrolase_4 domain-containing protein n=2 Tax=Sapr... [more]
A0A1V9ZDL9_9STRA1.520e-1150.88Hydrolase_4 domain-containing protein n=1 Tax=Achl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20469contigL-elsbetiae_contig20469:23..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.9498022-CDS-L-elsbetiae_contig20469:22..4211622815843.9498022-CDS-L-elsbetiae_contig20469:22..421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20469 23..421 +
1691683140.6794815-CDS-L-elsbetiae_contig20469:22..4211691683140.6794815-CDS-L-elsbetiae_contig20469:22..421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20469 23..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20469.6166.1prot_L-elsbetiae_contig20469.6166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20469 23..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20469.6166.1

>prot_L-elsbetiae_contig20469.6166.1 ID=prot_L-elsbetiae_contig20469.6166.1|Name=mRNA_L-elsbetiae_contig20469.6166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
GDSDHRGRPGSDDSLRGGQQPQRGAGIGGRGSGRQPPHQRQRQQRRRRRR
RRQGLQEADGRADQGAREEGVRDPGGLVPAAERPVHAGVQPRQRDGHRGH
ARPVLGDSGGRRRERSGVRLHGVRACQVCVEA*
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mRNA from alignment at L-elsbetiae_contig20469:23..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20469.6166.1 ID=mRNA_L-elsbetiae_contig20469.6166.1|Name=mRNA_L-elsbetiae_contig20469.6166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig20469:23..421+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGACAGCGACCACCGAGGGCGTCCAGGTAGCGACGATAGTCTCCGGGG CGGGCAGCAGCCGCAGCGGGGAGCCGGCATCGGTGGTCGTGGCAGCGGTA GACAACCCCCACACCAACGGCAGCGGCAGCAACGGCGGCGGCGCCGGCGC CGGCGGCAAGGACTCCAAGAAGCAGACGGTCGGGCTGATCAGGGGGCGCG GGAAGAAGGGGTCCGTGATCCCGGTGGCCTTGTACCGGCAGCCGAACGCC CGGTACACGCTGGTGTACAGCCACGGCAACGCGACGGACATCGGGGCCAT GCACGACCGGTGCTCGGGGATAGCGGAGGCCGTCGGCGTGAACGTTCTGG TGTACGACTACACGGGGTACGGGCGTGCCAGGTATGTGTTGAGGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20469:23..421+

>mRNA_L-elsbetiae_contig20469.6166.1 ID=mRNA_L-elsbetiae_contig20469.6166.1|Name=mRNA_L-elsbetiae_contig20469.6166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig20469:23..421+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGACAGCGACCACCGAGGGCGTCCAGGTAGCGACGATAGTCTCCGGGG
CGGGCAGCAGCCGCAGCGGGGAGCCGGCATCGGTGGTCGTGGCAGCGGTA
GACAACCCCCACACCAACGGCAGCGGCAGCAACGGCGGCGGCGCCGGCGC
CGGCGGCAAGGACTCCAAGAAGCAGACGGTCGGGCTGATCAGGGGGCGCG
GGAAGAAGGGGTCCGTGATCCCGGTGGCCTTGTACCGGCAGCCGAACGCC
CGGTACACGCTGGTGTACAGCCACGGCAACGCGACGGACATCGGGGCCAT
GCACGACCGGTGCTCGGGGATAGCGGAGGCCGTCGGCGTGAACGTTCTGG
TGTACGACTACACGGGGTACGGGCGTGCCAGGTATGTGTTGAGGCTTGAG
GCGACAGCGACCACCGAGGGCGTCCAGGTAGCGACGATAGTCTCCGGGGC
GGGCAGCAGCCGCAGCGGGGAGCCGGCATCGGTGGTCGTGGCAGCGGTAG
ACAACCCCCACACCAACGGCAGCGGCAGCAACGGCGGCGGCGCCGGCGCC
GGCGGCAAGGACTCCAAGAAGCAGACGGTCGGGCTGATCAGGGGGCGCGG
GAAGAAGGGGTCCGTGATCCCGGTGGCCTTGTACCGGCAGCCGAACGCCC
GGTACACGCTGGTGTACAGCCACGGCAACGCGACGGACATCGGGGCCATG
CACGACCGGTGCTCGGGGATAGCGGAGGCCGTCGGCGTGAACGTTCTGGT
GTACGACTACACGGGGTACGGGCGTGCCAGGTATGTGTTGAGGCTTGA
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