mRNA_L-elsbetiae_contig2044.6157.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI) HSP 1 Score: 370 bits (950), Expect = 5.440e-114 Identity = 197/232 (84.91%), Postives = 204/232 (87.93%), Query Frame = 1 Query: 199 AMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVG--PDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNRT 888 +MGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTR DGRGAGEAIVVLPN MEMQMALSRDKQHMGRRYIEIFQSKRMDYYSA+VGQLQ+Q NMGG MQRQ PDG+AMP VHTG+IRMRGLPFSATKQDV+ FFQGMPVTED IQFVVRGDGRVTGEAFVSF SPA+SEAAMSRNGNHMGTRYVELFAST EEIVRHMNRT Sbjct: 76 SMGDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAVVGQLQSQ-NMGG-MQRQXXXXXXXXXXXXXXXXXXXPDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEAAMSRNGNHMGTRYVELFASTPEEIVRHMNRT 305
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA) HSP 1 Score: 273 bits (699), Expect = 2.650e-80 Identity = 139/224 (62.05%), Postives = 164/224 (73.21%), Query Frame = 1 Query: 214 SLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVGPDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNR 885 +LE+VLGPFPCVRLRG+PFEAT+DDVLRFFQGL +DVVM+ RGDGRGAGEA+V+ NHM++ MALSRDKQHMGRRYIEIFQSKR DYY A G G G A A HTG+IRMRGLPFSATK DV+ FFQG+ V ++++QFVVRGDGRVTGEAFV+ SPA++EAAM RNG++MG+RY+ELF S EE RH +R Sbjct: 27 ALEEVLGPFPCVRLRGMPFEATVDDVLRFFQGLTVVDVVMILRGDGRGAGEALVLFANHMDLNMALSRDKQHMGRRYIEIFQSKRADYYHASQGS---------------------------GSAAATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAEAAMQRNGSNMGSRYIELFPSAIEEAARHTSR 223
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A7S4NCM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NCM0_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.920e-52 Identity = 131/297 (44.11%), Postives = 172/297 (57.91%), Query Frame = 1 Query: 205 GDYS---LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDG--RGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQL-QAQQNM---------------GGG-------------------MQR---QGGTHMGHAMGG----------GGGGVGPD-------GLAMPA---------VHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNRT 888 G++S LE VLG FPCVRLRGLP+ A+++DVL FFQGLV LD+V+V D +G GEA V+L NHM+ QMAL RD+Q+MG RYIE+FQ +R DYY+AI Q Q ++N+ GGG MQ+ QG G+ + G GG G+ PD G P+ HTG +RMRGLPFSA+K++VI FF+G +++I VR DGR TGE +V+F SP D++ AMS + N MG+RY+ELF S +EE R M+RT Sbjct: 106 GEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQFFQNKENLVDADRRGEHVMPDEAGGGPVWGGVAAVPAQTLNHPASMQQARPQGAVMPGNGVIGETKKSGAGVRGGQGIRPDQGSMGHMGTRAPSHRGGGIREGEHTGYLRMRGLPFSASKEEVIGFFKGYNTVDESICLTVRSDGRATGEGYVAFMSPDDAKEAMSLHRNTMGSRYIELFISNEEEHTRAMSRT 402
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A7R9WKK8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKK8_9STRA) HSP 1 Score: 189 bits (480), Expect = 8.240e-49 Identity = 122/301 (40.53%), Postives = 163/301 (54.15%), Query Frame = 1 Query: 205 GDYS---LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDG--RGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQL-QAQQNMGGGMQRQGGTHMGHAM------GGGGGGVG----------------PDGLAMPA---------------------------------------------VHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNRT 888 G++S LE VLG FPCVRLRGLP+ A+++DVL FFQGLV LD+V+V D +G GEA V+L NHM+ QMAL RD+Q+MG RYIE+FQ +R DYY+AI Q Q ++N+ + H + G GGVG P G +P HTG +RMRGLPFSA+K++V +FF+G E+++ VR DGR TGE +V+F SP D++ AM+ + N MG+RY+ELF S +EE R M+RT Sbjct: 88 GEHSSDMLEQVLGVFPCVRLRGLPYNASVEDVLIFFQGLVVLDIVVVASADDERKGTGEAFVILGNHMDFQMALQRDRQNMGHRYIEVFQGRRSDYYAAIAAQFFQNKENV-----VDSDRQVEHEIPEEARAGPAWGGVGTVPAQQLNHPPMPQARPQGAVVPGNGVIGEMKKNGAGIRGGQXXXXXXXXXXXXXXRGPSHRGGGIREGEHTGYLRMRGLPFSASKEEVTEFFKGYNAVEESVCLTVRSDGRATGEGYVAFLSPDDAKNAMTLHRNTMGSRYIELFISNKEEHTRAMSRT 383
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A7S2WJG1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJG1_9STRA) HSP 1 Score: 186 bits (471), Expect = 2.690e-47 Identity = 118/297 (39.73%), Postives = 151/297 (50.84%), Query Frame = 1 Query: 217 LEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIV------GQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVGPDGLAMPAV--------------------------------------------------------------------HTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNR 885 LE VLGPFPC RLRGLPF+A +DVL FFQGLV LDVV+V GRG+GEA VV PN M+ Q+AL RD+Q MG RYIE+FQ KR DYY+AI GQ + Q + G+A G PD + +P + HTG +RMRGLPFSA+K+D+ +FF+ ED+I RGDGR TGE +++F P D+E AMS + + MG+RY+ELF S +EE R ++R Sbjct: 112 LEAVLGPFPCARLRGLPFDAMPEDVLAFFQGLVVLDVVVVANSFGRGSGEAFVVFPNPMDFQVALQRDRQSMGHRYIEVFQGKRSDYYAAIASLFKQAGQSELPAEGETIRNTQDSSVQGNAWSGPAPPSSPDAVLIPLMQQLGSGGVSNHAPGTTAVGSNAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIQVGEHTGYLRMRGLPFSASKKDIFEFFKEYKPIEDSIVLTYRGDGRATGEGYIAFNQPNDAEDAMSLHKSTMGSRYIELFISHKEEHARAVSR 408
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A7S3BYF2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYF2_9VIRI) HSP 1 Score: 179 bits (454), Expect = 8.820e-47 Identity = 111/232 (47.84%), Postives = 142/232 (61.21%), Query Frame = 1 Query: 235 PFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMG-----------GGGGGVGPDGLAMP-AVHTGIIRMRGLPFSATKQDVIKFFQGM--PVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMG----TRYVELFASTQEEIVRH 876 PFP VRLRGLP++AT +DV FF GL +DVVM+ RG R GEA V+LPN ++ + AL R +Q+MGRRYIE+F SK+ DYYSA L GG GHA+G G G G G G P A HTG+I+MRGLPFS TKQ++++FF P+TED++ V+ DGR TGEAFV F P S+ AM+ N + TRYVELF S+++E R+ Sbjct: 21 PFPVVRLRGLPYDATENDVAAFFSGLDVVDVVMLWRGQ-RPTGEAFVLLPNAVQAEFALQRSRQNMGRRYIEVFASKKSDYYSAAATAL----------SMSGGGFDGHALGEHSHAHAGPRAGAGRGGGMVGQGRPEAEHTGVIKMRGLPFSTTKQEILQFFGEFAGPLTEDSVFIRVQQDGRATGEAFVEFPGPEQSQVAMACNRKDLSSGGNTRYVELFVSSKDEQGRY 241
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: C1MRF4_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MRF4_MICPC) HSP 1 Score: 176 bits (445), Expect = 4.800e-46 Identity = 107/228 (46.93%), Postives = 141/228 (61.84%), Query Frame = 1 Query: 205 GDYSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVGPDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQGM-----PVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVR 873 G + +E V FP VRLRGLPF A+ DV FFQGL P+DV++V R DGR GEA VVL N M M++AL +++ MGRRYIE+F+SK+ DYY A+ + G+ GG GGG +G A HTG++++RGLPFSATK D+I FF P+ D+I V+ DGR +G AFV F S D++ AM ++ + MGTRYVELF S++EE R Sbjct: 16 GGFGVEKV---FPVVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRR-DGRATGEAYVVLANQMLMEVALQKNRGPMGRRYIEVFRSKKQDYYHAVSIAVNE-------------PDYGNGNGGQGGGYYDNGPL--AEHTGVLKLRGLPFSATKDDIITFFDDKSLGVSPLVHDSIHIVLSVDGRPSGVAFVEFVSAEDAKTAMIKDRSSMGTRYVELFPSSREEATR 224
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A822YFJ2_NELNU (RRM domain-containing protein n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YFJ2_NELNU) HSP 1 Score: 177 bits (448), Expect = 5.280e-46 Identity = 98/211 (46.45%), Postives = 135/211 (63.98%), Query Frame = 1 Query: 235 PFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVGPDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEI 867 PFP VRLRGLPF+ T DVL FF GL +DV+ V + +GR GEA VL +++ A+ R++Q+MGRRYIE+F+SKR +YY A+ ++ + GG R+GG G D H+G++R+RGLPFSA K DVI+FF+ ++ED I DGR TGEAFV F SP DS+AAM+++ +G+RY+ELF S+ EE+ Sbjct: 60 PFPAVRLRGLPFDCTEADVLEFFHGLDIIDVLFVHK-NGRFTGEAYCVLGYPLQVDFAIQRNRQNMGRRYIEVFRSKRQEYYKAVANEVSDAR---GGSPRRGGPR----------GRSYDDGKDSVEHSGVLRLRGLPFSAGKDDVIEFFKDFKLSEDTIHITFNSDGRPTGEAFVEFASPEDSKAAMAKDRMTLGSRYIELFPSSHEEL 256
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: A0A2R6WWW9_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WWW9_MARPO) HSP 1 Score: 177 bits (448), Expect = 7.930e-46 Identity = 102/233 (43.78%), Postives = 145/233 (62.23%), Query Frame = 1 Query: 199 AMGDYSLEDVLG---PFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMGGGMQRQGGTHMGHAMGGGGGGVGPDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQGMPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVRHMNRT 888 A G ++ VLG PFP VRLRGLPF + DV FF GL +DV++V R GR +GEA VV M++ AL R++Q+MGRRYIE+F+ K+ DYY A+ + ++ GG + G D L HTG++++RGLPFSA+K+D+I FF+ +T++ + V DGR TGEAFV F SP++S+AAMS++ +G+RYVELF S++EE R ++T Sbjct: 60 AYGSPNIAQVLGQPRPFPVVRLRGLPFNCSESDVFEFFAGLDVVDVLLV-RKQGRFSGEAFVVFGAPMQVDFALQRNRQNMGRRYIEVFRCKKHDYYQAVAADVAEPKDDGGHISTPPGKVSSEK----------DHLE----HTGVLKLRGLPFSASKRDIIDFFREYGLTDENVHIVSHADGRATGEAFVEFASPSESKAAMSKDKMTLGSRYVELFPSSREEATRAASKT 277
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Match: C1E0A7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E0A7_MICCC) HSP 1 Score: 176 bits (445), Expect = 9.050e-46 Identity = 108/229 (47.16%), Postives = 138/229 (60.26%), Query Frame = 1 Query: 238 FPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRGDGRGAGEAIVVLPNHMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAIVGQLQAQQNMG----GGMQ--RQGGTHMGHAMGGGGGGV-----GPDGLAMPAVHTGIIRMRGLPFSATKQDVIKFFQG------MPVTEDAIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGNHMGTRYVELFASTQEEIVR 873 FP VRLRGLPF A D+L FFQGL P+DV++V R DGR GEA V+ N M+M AL +++ MGRRYIE+F+SK+ DYY A+ + G GG G H+ H G GG P + P HTG+++MRGLPFSATK D+I F+ P+T D+I V DGR +G AFV F S D++AAMSR+ MG+RYVELF S++EE R Sbjct: 18 FPVVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRR-DGRATGEAYVLFANPMQMDFALQKNRGPMGRRYIEVFRSKKQDYYYAVAHAVNEPTPHGTDFYGGDNGLASGAGHLAHVAGVGGPAPPVPHGAPAAVRPPQEHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHIVTSLDGRPSGMAFVEFASAEDAKAAMSRDRCTMGSRYVELFPSSREEATR 245 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2044.6157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2044.6157.1 >prot_L-elsbetiae_contig2044.6157.1 ID=prot_L-elsbetiae_contig2044.6157.1|Name=mRNA_L-elsbetiae_contig2044.6157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=293bp MTPQQGIMGQGMGQGMGQGMGAQGMGQGMGAQGMGQGMVGGGVGHGNVPGback to top mRNA from alignment at L-elsbetiae_contig2044:2621..11757+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2044.6157.1 ID=mRNA_L-elsbetiae_contig2044.6157.1|Name=mRNA_L-elsbetiae_contig2044.6157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9137bp|location=Sequence derived from alignment at L-elsbetiae_contig2044:2621..11757+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2044:2621..11757+ >mRNA_L-elsbetiae_contig2044.6157.1 ID=mRNA_L-elsbetiae_contig2044.6157.1|Name=mRNA_L-elsbetiae_contig2044.6157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1758bp|location=Sequence derived from alignment at L-elsbetiae_contig2044:2621..11757+ (Laminarionema elsbetiae ELsaHSoW15)back to top |