mRNA_L-elsbetiae_contig20427.6154.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20427.6154.1
Unique NamemRNA_L-elsbetiae_contig20427.6154.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: UPI0005D426F9 (uncharacterized protein LOC18448660 isoform X1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D426F9)

HSP 1 Score: 68.6 bits (166), Expect = 2.830e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:   49 MSPADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHKDYKKPKIIAWNPDSVES 315
            ++PA WW++YG+  P L ++AIR+ S+   S+G ERNWS +  +   K  R++ ER    V+V  NLRL+ +  K  +   +NP  +++
Sbjct:  591 LTPAAWWQSYGMCCPTLQRIAIRILSQTCTSSGCERNWSSFDQIHTKKRNRLAQERLNDLVYVHYNLRLKDRQMKMGEPWTYNPIRLDN 679
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: A0A8J5TF56_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TF56_ZIZPA)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-10
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   55 PADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHKDYKK 276
            PADWW TYG H+P L K+AIR+ S   +++G ERNWS +  V   K  R+   R    V+V+ N RL  K  K+
Sbjct:  595 PADWWATYGCHVPLLQKMAIRILSLTSSASGCERNWSTFDMVHTKKRNRLGVGRLNNLVYVQFNARLLKKTEKR 668
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: A0A6D2HUB0_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HUB0_9BRAS)

HSP 1 Score: 59.3 bits (142), Expect = 4.960e-8
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   55 PADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRL 255
            P  WW  YG+ +P L KVA ++ S   +S+G ERNWS +  V   K  R+ T+R    V+V+ N+RL
Sbjct:  591 PVQWWNFYGVEVPNLQKVARKILSLTTSSSGCERNWSIFEGVHIKKRNRLDTKRLNDLVYVQFNMRL 657
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: UPI000D1C7CE8 (uncharacterized protein LOC112341331 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7CE8)

HSP 1 Score: 58.9 bits (141), Expect = 6.720e-8
Identity = 24/70 (34.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   55 PADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHK 264
            P  WW ++GL +P+L ++A+R+ S+V  ++  ERNWS +  +   + +R+  + A K V++  NLR+  K
Sbjct:  538 PVTWWSSFGLEMPDLRRMALRILSQVVCASPCERNWSSWSLIQTKRRSRLLPKNAEKLVYIHTNLRVVQK 607
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: UPI000A29E15B (uncharacterized protein LOC9329838 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29E15B)

HSP 1 Score: 56.2 bits (134), Expect = 5.960e-7
Identity = 23/70 (32.86%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   55 PADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHK 264
            P  WW TYG+ +P L  +A+++ S   +S+G +RNWS + ++   +  R+ T++    V+V+ N +L +K
Sbjct:  572 PEHWWSTYGVSVPSLETLAMKILSLTSSSSGCQRNWSTFEEIHKSERNRLDTDQMNSVVYVQFNSKLFNK 641
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: A0A834SDX6_9FABA (Zf-BED domain-containing protein/DUF659 domain-containing protein/Dimer_Tnp_hAT domain-containing protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SDX6_9FABA)

HSP 1 Score: 54.7 bits (130), Expect = 1.750e-6
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:   55 PADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHK 264
            PA WW++YG H PEL K  IR  S   +S+G E NWS +  V   +  R+  ++    VFV  N +L+ K
Sbjct:  156 PAQWWDSYGDHCPELQKFTIRTLSLTCSSSGCECNWSAFEMVHTKRRNRLHQKKMNDLVFVMYNQKLKDK 225
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BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Match: A0A151U7W0_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U7W0_CAJCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.750e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   49 MSPADWWETYGLHLPELTKVAIRVTSKVPASAGAERNWS 165
            M PA+WWE +G H PEL + AIRV S   +S+G ERNWS
Sbjct:  435 MLPAEWWEMFGDHCPELKRFAIRVLSLTCSSSGCERNWS 473
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20427.6154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI0005D426F92.830e-1135.96uncharacterized protein LOC18448660 isoform X1 n=1... [more]
A0A8J5TF56_ZIZPA1.830e-1044.59Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
A0A6D2HUB0_9BRAS4.960e-841.79Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI000D1C7CE86.720e-834.29uncharacterized protein LOC112341331 n=3 Tax=Selag... [more]
UPI000A29E15B5.960e-732.86uncharacterized protein LOC9329838 n=1 Tax=Arabido... [more]
A0A834SDX6_9FABA1.750e-640.00Zf-BED domain-containing protein/DUF659 domain-con... [more]
A0A151U7W0_CAJCA2.750e-658.97Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20427contigL-elsbetiae_contig20427:1862..2393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.5
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog90675.XP_010436496.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7QK@1,2QRQU@2759,37TNR@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.022259-CDS-L-elsbetiae_contig20427:1861..20361622815843.022259-CDS-L-elsbetiae_contig20427:1861..2036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20427 1862..2036 +
1691683140.0858748-CDS-L-elsbetiae_contig20427:1861..20361691683140.0858748-CDS-L-elsbetiae_contig20427:1861..2036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20427 1862..2036 +
1622815843.0340917-CDS-L-elsbetiae_contig20427:2253..23931622815843.0340917-CDS-L-elsbetiae_contig20427:2253..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20427 2254..2393 +
1691683140.0953147-CDS-L-elsbetiae_contig20427:2253..23931691683140.0953147-CDS-L-elsbetiae_contig20427:2253..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20427 2254..2393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20427.6154.1prot_L-elsbetiae_contig20427.6154.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20427 1862..2393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20427.6154.1

>prot_L-elsbetiae_contig20427.6154.1 ID=prot_L-elsbetiae_contig20427.6154.1|Name=mRNA_L-elsbetiae_contig20427.6154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RTGKWEGAELLSFAQAMSPADWWETYGLHLPELTKVAIRVTSKVPASAGA
ERNWSWYGDVTGGKHARMSTERARKQVFVRANLRLQHKDYKKPKIIAWNP
DSVES
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mRNA from alignment at L-elsbetiae_contig20427:1862..2393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20427.6154.1 ID=mRNA_L-elsbetiae_contig20427.6154.1|Name=mRNA_L-elsbetiae_contig20427.6154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=532bp|location=Sequence derived from alignment at L-elsbetiae_contig20427:1862..2393+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACAGGGAAGTGGGAGGGAGCGGAGCTCCTTTCTTTCGCCCAAGCGAT
GTCACCTGCCGACTGGTGGGAGACGTACGGCCTTCACCTGCCGGAGTTGA
CCAAGGTCGCGATTCGCGTGACTTCCAAGGTGCCTGCGTCGGCGGGAGCG
GAGCGCAATTGGAGTTGGTACGGAGGTAAGATTATTTTTGATTGATTTTA
GATTTTGGTGCAATTGAAGAAAATGAATGATCGTGAAGATTCAGAGACTC
CGACCTTTATACTTTATACTTAAGAGTACACAGAAGAGATAAACACGCAC
GTGAAAATTTCCACGCCCTCAAATTCAATTTGTTCGCGTCTCACCTCACG
CCCTTGCCTTCTGCCCTCTTCCCTTACCCGTGTACTGTTCAGATGTCACG
GGTGGCAAGCATGCACGCATGTCCACGGAGCGCGCCAGGAAGCAAGTCTT
CGTGAGGGCCAACCTGCGCCTTCAACACAAGGACTACAAAAAGCCCAAAA
TCATCGCCTGGAACCCGGATTCAGTAGAGTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20427:1862..2393+

>mRNA_L-elsbetiae_contig20427.6154.1 ID=mRNA_L-elsbetiae_contig20427.6154.1|Name=mRNA_L-elsbetiae_contig20427.6154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig20427:1862..2393+ (Laminarionema elsbetiae ELsaHSoW15)
AGGACAGGGAAGTGGGAGGGAGCGGAGCTCCTTTCTTTCGCCCAAGCGAT
GTCACCTGCCGACTGGTGGGAGACGTACGGCCTTCACCTGCCGGAGTTGA
CCAAGGTCGCGATTCGCGTGACTTCCAAGGTGCCTGCGTCGGCGGGAGCG
GAGCGCAATTGGAGTTGGTACGGAGAGGACAGGGAAGTGGGAGGGAGCGG
AGCTCCTTTCTTTCGCCCAAGCGATGTCACCTGCCGACTGGTGGGAGACG
TACGGCCTTCACCTGCCGGAGTTGACCAAGGTCGCGATTCGCGTGACTTC
CAAGGTGCCTGCGTCGGCGGGAGCGGAGCGCAATTGGAGTTGGTACGGAG
ATGTCACGGGTGGCAAGCATGCACGCATGTCCACGGAGCGCGCCAGGAAG
CAAGTCTTCGTGAGGGCCAACCTGCGCCTTCAACACAAGGACTACAAAAA
GCCCAAAATCATCGCCTGGAACCCGGATTCAGTAGAGTCTATGTCACGGG
TGGCAAGCATGCACGCATGTCCACGGAGCGCGCCAGGAAGCAAGTCTTCG
TGAGGGCCAACCTGCGCCTTCAACACAAGGACTACAAAAAGCCCAAAATC
ATCGCCTGGAACCCGGATTCAGTAGAGTCT
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