mRNA_L-elsbetiae_contig20228.6086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20228.6086.1
Unique NamemRNA_L-elsbetiae_contig20228.6086.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20228.6086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20228contigL-elsbetiae_contig20228:582..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.6012788-CDS-L-elsbetiae_contig20228:581..10251622815836.6012788-CDS-L-elsbetiae_contig20228:581..1025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20228 582..1025 +
1691683135.641436-CDS-L-elsbetiae_contig20228:581..10251691683135.641436-CDS-L-elsbetiae_contig20228:581..1025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20228 582..1025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.6109-UTR-L-elsbetiae_contig20228:1025..11571622815836.6109-UTR-L-elsbetiae_contig20228:1025..1157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20228 1026..1157 +
1691683135.6507838-UTR-L-elsbetiae_contig20228:1025..11571691683135.6507838-UTR-L-elsbetiae_contig20228:1025..1157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20228 1026..1157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20228.6086.1prot_L-elsbetiae_contig20228.6086.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20228 582..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20228.6086.1

>prot_L-elsbetiae_contig20228.6086.1 ID=prot_L-elsbetiae_contig20228.6086.1|Name=mRNA_L-elsbetiae_contig20228.6086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
VEAAGVISVVQPQQPTQETQETLHSLQPLSRPQLQPPTQQHPEQPKHKLE
QPIGGEPTSSALTGAKRDVDDDAEPPNKRSRSGTETAGAQSTGAAVASAT
VAAAVTAAAAVAAATQDDVQVPAAPAPSASLPIESSVCVPRDLESQL*
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mRNA from alignment at L-elsbetiae_contig20228:582..1157+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20228.6086.1 ID=mRNA_L-elsbetiae_contig20228.6086.1|Name=mRNA_L-elsbetiae_contig20228.6086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig20228:582..1157+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGCGGCGGGGGTCATCTCCGTGGTGCAGCCGCAGCAGCCGACGCA
AGAGACGCAAGAGACACTGCACTCTCTGCAACCGCTTTCACGGCCTCAGC
TCCAGCCACCTACGCAGCAGCACCCCGAGCAACCTAAGCATAAACTAGAA
CAGCCCATTGGCGGAGAGCCCACGTCTTCTGCCCTCACTGGGGCAAAGCG
GGACGTCGACGACGATGCGGAGCCCCCCAACAAAAGGAGCCGTAGTGGCA
CAGAAACTGCCGGCGCTCAATCTACCGGCGCTGCTGTTGCCTCTGCTACA
GTTGCTGCTGCTGTTACGGCTGCAGCAGCTGTGGCGGCTGCGACCCAAGA
TGACGTACAAGTACCGGCCGCTCCTGCTCCCTCTGCTAGTCTTCCCATCG
AAAGCTCAGTTTGCGTGCCTCGAGACCTCGAGTCCCAGCTCTGATGGATT
CGATCTTCCTCTTTGTTGCTTTGGCATTTGTTATCTCAAATTGTGCGTGG
AAACGGCAGGCGTCTTTTGCCTCCTAAATCGCGATTCGGTGGGAGGGCTA
CCTACCTGGTGCATTATTCGGGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20228:582..1157+

>mRNA_L-elsbetiae_contig20228.6086.1 ID=mRNA_L-elsbetiae_contig20228.6086.1|Name=mRNA_L-elsbetiae_contig20228.6086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig20228:582..1157+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGCGGCGGGGGTCATCTCCGTGGTGCAGCCGCAGCAGCCGACGCA
AGAGACGCAAGAGACACTGCACTCTCTGCAACCGCTTTCACGGCCTCAGC
TCCAGCCACCTACGCAGCAGCACCCCGAGCAACCTAAGCATAAACTAGAA
CAGCCCATTGGCGGAGAGCCCACGTCTTCTGCCCTCACTGGGGCAAAGCG
GGACGTCGACGACGATGCGGAGCCCCCCAACAAAAGGAGCCGTAGTGGCA
CAGAAACTGCCGGCGCTCAATCTACCGGCGCTGCTGTTGCCTCTGCTACA
GTTGCTGCTGCTGTTACGGCTGCAGCAGCTGTGGCGGCTGCGACCCAAGA
TGACGTACAAGTACCGGCCGCTCCTGCTCCCTCTGCTAGTCTTCCCATCG
AAAGCTCAGTTTGCGTGCCTCGAGACCTCGAGTCCCAGCTCTGAGTGGAG
GCGGCGGGGGTCATCTCCGTGGTGCAGCCGCAGCAGCCGACGCAAGAGAC
GCAAGAGACACTGCACTCTCTGCAACCGCTTTCACGGCCTCAGCTCCAGC
CACCTACGCAGCAGCACCCCGAGCAACCTAAGCATAAACTAGAACAGCCC
ATTGGCGGAGAGCCCACGTCTTCTGCCCTCACTGGGGCAAAGCGGGACGT
CGACGACGATGCGGAGCCCCCCAACAAAAGGAGCCGTAGTGGCACAGAAA
CTGCCGGCGCTCAATCTACCGGCGCTGCTGTTGCCTCTGCTACAGTTGCT
GCTGCTGTTACGGCTGCAGCAGCTGTGGCGGCTGCGACCCAAGATGACGT
ACAAGTACCGGCCGCTCCTGCTCCCTCTGCTAGTCTTCCCATCGAAAGCT
CAGTTTGCGTGCCTCGAGACCTCGAGTCCCAGCTCTGA
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