Homology
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Match:
D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)
HSP 1 Score: 122 bits (307), Expect = 4.530e-30
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 40 PWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDISLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGVGAAELKAARIALGKFEVILR 360
PWF+GF + VAAV T+GHPI+R+L + E + LEE +SW + G A++S+ YR+GYQ +DNYLVRVL G++AW+LPPG VG +EL+AARIALGKFEV+LR
Sbjct: 70 PWFDGFG---GRDGVAAV-TVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLR 172
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Match:
A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)
HSP 1 Score: 117 bits (292), Expect = 4.640e-28
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 40 PWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDISLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGVGAAELK----AARIALGKFEVILR 360
PWF+GF + VAAV TIGHPI+R+L + E + LEE +SW + G A++S+ YR+GYQ +DNYLVRVL G++AW+LPPG VG EL+ AARIALGKFEV+LR
Sbjct: 70 PWFDGFG---GRDGVAAV-TIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLR 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.53e-30 / Id = 57.94 Expect = 4.64e-28 / Id = 56.76 Sequence D8LSI2_ECTSI A0A6H5KKJ1_9PHAE
Match Name E-value Identity Description
D8LSI2_ECTSI 4.530e-30 57.94 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE 4.640e-28 56.76 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 360
Cds size 360
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815835.8102314-CDS-L-elsbetiae_contig2021:2214..2401 1622815835.8102314-CDS-L-elsbetiae_contig2021:2214..2401 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 2215..2401 +
1691683135.109957-CDS-L-elsbetiae_contig2021:2214..2401 1691683135.109957-CDS-L-elsbetiae_contig2021:2214..2401 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 2215..2401 +
1622815835.8220553-CDS-L-elsbetiae_contig2021:3076..3207 1622815835.8220553-CDS-L-elsbetiae_contig2021:3076..3207 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 3077..3207 +
1691683135.1200612-CDS-L-elsbetiae_contig2021:3076..3207 1691683135.1200612-CDS-L-elsbetiae_contig2021:3076..3207 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 3077..3207 +
1622815835.834757-CDS-L-elsbetiae_contig2021:3870..3912 1622815835.834757-CDS-L-elsbetiae_contig2021:3870..3912 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 3871..3912 +
1691683135.130119-CDS-L-elsbetiae_contig2021:3870..3912 1691683135.130119-CDS-L-elsbetiae_contig2021:3870..3912 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig2021 3871..3912 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2021.6078.1
>prot_L-elsbetiae_contig2021.6078.1 ID=prot_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MKQQQQQQQQQPQPWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDI SLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGV GAAELKAARIALGKFEVILR back to top mRNA from alignment at L-elsbetiae_contig2021:2215..3912+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2021.6078.1 ID=mRNA_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:2215..3912+ (Laminarionema elsbetiae ELsaHSoW15)ATGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGA
GGGGTTTACAGTACCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCA
TCGGGCACCCCATACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATC
TCGCTAGAGGAATCCTTGAGTTGGATGGACGGTGAAG GTGAGAGGTTGAA
ACCGCACCACCTTTTCTTCGATTTTTTGTCTGCATGTGCACGAAACACGC
AGCAACGGATGCTCATCGATGCGCGTGTGCCTGAAGGCGCCAATGTGAAG
AGGTAGTGCACGAACCTGCCACACGGACCCCCACACCTGCGGCGAAAGTT
TTTTCCTCCGACCCAGGAGGCTTTCCATTAAGCGCAAAGCGCGTGGAAAC
AGGGACGTACAGGGGCACCAGGTGACAAACAGCTTTTGCTCGGACGCCGG
TCACAGTATAAATAGCCGCGAACCCAACGGCCAGGCCCAAATAGAATCGA
ACTACCGGCAGGGTTTAGGCTCCTGGCCGAAGTCGCAGAAGCACCTATTC
GGACGTGTTCAGCGTAGTTCAGTCACCCAGCTGCAAGAACAGCGCTCAAC
CTCAGCTTGATACTCAGGAACCTACGCGGCGCCTTTCTGGTGACGTACAC
ACGTGCGTCCTGCTGGAATCGATGTCCTACAATAGATACCTATGTACATA
TCTGTCTCGCAGCTCTTGCCGTCAGAGCACATGTACAAGTATGCACTGTT
CAGGAAAAGATCTTCCGTCCTGTGCCCCCCTGCCTCCTGTCTAAAGGGGT
TGGTCCAACTACTCGGCACATATCTATGCATGTTTCGGCTTGGCTGGTCG
TTACCACGGCAGGTATCCCTGCCAACTCGTCTACCCACTACCGGCGGGGC
TACCAACTTGTGGACAATTACTTGGTCCGTGTGCTGGGTGGGCGGGCCGC
GTGGGAGTTACCGCCTGGGGGGGTCGGAGCCGCTGAGCTCAAG GTCGGTG
GGGTGGTTTTAGGGCGAGGGCGTTGTCTTTTGTTGCTTGCCTTTTTCTCT
TTTTGCCATCGACGGCATTTTCGAGTTGGAGAACCACCATGCCTGCTTGT
GATGTAGAGGTACCGCCAACATTTTGGGCACTCTTTACGTGTTTTTCCCG
CAGTGTTCTGCGCCTGTACCAAGTATTTTGCGTTATGAGTTTTTCTCACC
GCTTTCGGTGGGCTTTGGCATCCACCGTGTACCCTCTGTGTTTGTACCGC
AACGAATACATACAGCGTTCTAGGGCGAGCGTTTTGGTTGTTATTTCCGT
CTTTTTGTGACGCAGATTTCGAAGCTGTGTTCCTTTGTTTTGAAAGCGAA
AGCTGGAAAGGGAAAATGTTCTCCATCCCGCCGCTTTTCCCCTCTCAGTA
CGGGGCATAAACTTCATTTCGGTTTCAACCACCACTTGCCGGGTTACGTT
TTGTTTGTGCTGACCATTGCAGCGGACTCTTGTACTGTATGGCTCTCTGT
GTTTTTGGTATGCCAGGGTACTACTGTACACGCGCACGGGCTTTAAACTC
CTTGCGCTAACGACTATTTTTGACGAGGAATGCCATTGTGAGGCAACATA
CCTTAGCGTGACCTTTCTCCCGCCTCGGTGCCGTACGCCGATGCCGTCCT
CGCCAGGCGGCGCGAATCGCGCTCGGAAAGTTCGAGGTCATACTGCGG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2021:2215..3912+
>mRNA_L-elsbetiae_contig2021.6078.1 ID=mRNA_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:2215..3912+ (Laminarionema elsbetiae ELsaHSoW15) ATGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGA GGGGTTTACAGTACCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCA TCGGGCACCCCATACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATC TCGCTAGAGGAATCCTTGAGTTGGATGGACGGTGAAGATGAAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGAGGGGTTTACAGTA CCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCATCGGGCACCCCAT ACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATCTCGCTAGAGGAAT CCTTGAGTTGGATGGACGGTGAAGGTATCCCTGCCAACTCGTCTACCCAC TACCGGCGGGGCTACCAACTTGTGGACAATTACTTGGTCCGTGTGCTGGG TGGGCGGGCCGCGTGGGAGTTACCGCCTGGGGGGGTCGGAGCCGCTGAGC TCAAGGTATCCCTGCCAACTCGTCTACCCACTACCGGCGGGGCTACCAAC TTGTGGACAATTACTTGGTCCGTGTGCTGGGTGGGCGGGCCGCGTGGGAG TTACCGCCTGGGGGGGTCGGAGCCGCTGAGCTCAAGGCGGCGCGAATCGC GCTCGGAAAGTTCGAGGTCATACTGCGGGCGGCGCGAATCGCGCTCGGAA AGTTCGAGGTCATACTGCGG back to top