mRNA_L-elsbetiae_contig20102.6043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20102.6043.1
Unique NamemRNA_L-elsbetiae_contig20102.6043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20102.6043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20102contigL-elsbetiae_contig20102:1690..2503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size815
Cds size513
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.5985656-UTR-L-elsbetiae_contig20102:1689..19901622815832.5985656-UTR-L-elsbetiae_contig20102:1689..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20102 1690..1990 +
1691683132.871656-UTR-L-elsbetiae_contig20102:1689..19901691683132.871656-UTR-L-elsbetiae_contig20102:1689..1990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20102 1690..1990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.610244-CDS-L-elsbetiae_contig20102:1990..25031622815832.610244-CDS-L-elsbetiae_contig20102:1990..2503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20102 1991..2503 +
1691683132.8832133-CDS-L-elsbetiae_contig20102:1990..25031691683132.8832133-CDS-L-elsbetiae_contig20102:1990..2503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20102 1991..2503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20102.6043.1prot_L-elsbetiae_contig20102.6043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20102 1991..2503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20102.6043.1

>prot_L-elsbetiae_contig20102.6043.1 ID=prot_L-elsbetiae_contig20102.6043.1|Name=mRNA_L-elsbetiae_contig20102.6043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
MHAMRTTRSIRSAHGSVSKQNRGKTTQIKRSAFRGTQPINAGQQTSTDRR
EQPHTNHTKEGITYSLTTPKQKTSKNALRNLIQLKQRKTRKRPPTDNTCM
PSRCDDRYEKHLKNTSPGCRPFLDFDFAFSCSDTNSSLYTHPKMCAYVYA
YVGRNPPKVQTAVPNSRENSI
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mRNA from alignment at L-elsbetiae_contig20102:1690..2503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20102.6043.1 ID=mRNA_L-elsbetiae_contig20102.6043.1|Name=mRNA_L-elsbetiae_contig20102.6043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=814bp|location=Sequence derived from alignment at L-elsbetiae_contig20102:1690..2503+ (Laminarionema elsbetiae ELsaHSoW15)
TACTCCAAACCCAGCTCTGGTTGGAAGCTGTGTAACCGTCCGCCAAAAGT
CTAAGGACAAAGCAAAGCAACCAGAAAAAAAAACAGATGCAAGATAAAAC
AGGTTACACATGGTTGCCAGCCAACCACCGAAAGAGAGAAAGAATCCCAA
GTGAGAAGAGAAGACACACAACACTTACAAAACATACTTTACAGATGGAC
GTCATGGGGGTTAAAAGAGTAAACCAACAGAAGAAGAGCCACACCCATTA
TTGGGCAAAACAAAAAAGCTTTCACGCGCCTCAGAGGCAGGCCATGCATG
CATGCATGCCATGCGCACAACACGAAGTATTCGAAGTGCGCATGGGTCAG
TCAGCAAACAGAACAGGGGGAAAACAACTCAAATCAAGCGGTCTGCGTTT
CGGGGTACACAACCAATAAACGCGGGGCAACAAACTTCAACAGACCGTCG
AGAGCAGCCACACACGAACCACACAAAAGAGGGGATTACATATAGTCTTA
CCACCCCCAAACAGAAAACAAGCAAGAATGCATTGCGAAACTTAATTCAA
TTAAAACAACGGAAAACACGAAAAAGGCCACCCACAGACAACACTTGCAT
GCCCTCACGCTGCGACGATAGGTACGAAAAACACCTGAAAAACACGTCTC
CCGGATGTAGACCATTCCTCGACTTTGACTTTGCTTTTTCCTGCAGTGAC
ACAAACAGCTCCTTATACACGCACCCGAAAATGTGCGCGTATGTGTACGC
GTACGTAGGTAGAAACCCCCCGAAAGTACAGACTGCTGTGCCCAACTCTC
GCGAGAACAGTATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20102:1690..2503+

>mRNA_L-elsbetiae_contig20102.6043.1 ID=mRNA_L-elsbetiae_contig20102.6043.1|Name=mRNA_L-elsbetiae_contig20102.6043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig20102:1690..2503+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCCATGCGCACAACACGAAGTATTCGAAGTGCGCATGGGTCAGT
CAGCAAACAGAACAGGGGGAAAACAACTCAAATCAAGCGGTCTGCGTTTC
GGGGTACACAACCAATAAACGCGGGGCAACAAACTTCAACAGACCGTCGA
GAGCAGCCACACACGAACCACACAAAAGAGGGGATTACATATAGTCTTAC
CACCCCCAAACAGAAAACAAGCAAGAATGCATTGCGAAACTTAATTCAAT
TAAAACAACGGAAAACACGAAAAAGGCCACCCACAGACAACACTTGCATG
CCCTCACGCTGCGACGATAGGTACGAAAAACACCTGAAAAACACGTCTCC
CGGATGTAGACCATTCCTCGACTTTGACTTTGCTTTTTCCTGCAGTGACA
CAAACAGCTCCTTATACACGCACCCGAAAATGTGCGCGTATGTGTACGCG
TACGTAGGTAGAAACCCCCCGAAAGTACAGACTGCTGTGCCCAACTCTCG
CGAGAACAGTATCATGCATGCCATGCGCACAACACGAAGTATTCGAAGTG
CGCATGGGTCAGTCAGCAAACAGAACAGGGGGAAAACAACTCAAATCAAG
CGGTCTGCGTTTCGGGGTACACAACCAATAAACGCGGGGCAACAAACTTC
AACAGACCGTCGAGAGCAGCCACACACGAACCACACAAAAGAGGGGATTA
CATATAGTCTTACCACCCCCAAACAGAAAACAAGCAAGAATGCATTGCGA
AACTTAATTCAATTAAAACAACGGAAAACACGAAAAAGGCCACCCACAGA
CAACACTTGCATGCCCTCACGCTGCGACGATAGGTACGAAAAACACCTGA
AAAACACGTCTCCCGGATGTAGACCATTCCTCGACTTTGACTTTGCTTTT
TCCTGCAGTGACACAAACAGCTCCTTATACACGCACCCGAAAATGTGCGC
GTATGTGTACGCGTACGTAGGTAGAAACCCCCCGAAAGTACAGACTGCTG
TGCCCAACTCTCGCGAGAACAGTATC
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