mRNA_L-elsbetiae_contig201.6038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig201.6038.1
Unique NamemRNA_L-elsbetiae_contig201.6038.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Match: D8LKP0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-9
Identity = 69/158 (43.67%), Postives = 83/158 (52.53%), Query Frame = 1 
Query:   34 LQASPL-----VPSDPVLAMQMGARLALTGHLNLIPFGDINTATGGSATAPAEFRAQPAAPXXXXXVGAIAAAGVGAXXXXXXXXXXXXXXXXXXAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLPSKPVCSRPSNNTSLESGG 492
            LQ+S L     +PSDPVLAMQMGA++AL+G+L LIPFG  +  TGG A A +      A P       A +              XXXXXXXXXX        VP       P G LPAWT LPHPP WLK ++HP G+P       PS+ T+  S G
Sbjct:  168 LQSSSLATVGRIPSDPVLAMQMGAQMALSGNLGLIPFG-ASMGTGGIAGAISGTPTAGAKPT------AASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXVP-------PLGGLPAWTGLPHPPQWLKKEEHPQGVP-------PSHKTNSSSRG 304
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BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Match: A0A6H5J8M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-6
Identity = 60/129 (46.51%), Postives = 70/129 (54.26%), Query Frame = 1 
Query:   52 VPSDPVLAMQMGARLALTGHLNLIPFGDINTATGGSATAPAEFRAQPAAPXXXXXVGAIAAAGVGAXXXXXXXXXXXXXXXXXXAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLP 438
            +PSDPVLAMQMGAR+AL+G+L LIPFG  +  +GG A A       PAA          A   + A     XXXXXXXXXXXXX                     LPAWT LPHPP WL+ + HP G+P
Sbjct:  179 IPSDPVLAMQMGARMALSGNLGLIPFG-ASMGSGGIAGA---IGGTPAAGAKPTAASTQAQHPLIAPPAALXXXXXXXXXXXXXXXXXXXXXXDG----------LPAWTGLPHPPQWLETEKHPQGVP 293
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig201.6038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP0_ECTSI3.570e-943.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8M8_9PHAE1.220e-646.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig201contigL-elsbetiae_contig201:46532..47948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.3485587-CDS-L-elsbetiae_contig201:46531..466371622815832.3485587-CDS-L-elsbetiae_contig201:46531..46637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 46532..46637 +
1691683132.7407699-CDS-L-elsbetiae_contig201:46531..466371691683132.7407699-CDS-L-elsbetiae_contig201:46531..46637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 46532..46637 +
1622815832.3629763-CDS-L-elsbetiae_contig201:47536..479461622815832.3629763-CDS-L-elsbetiae_contig201:47536..47946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 47537..47946 +
1691683132.7514863-CDS-L-elsbetiae_contig201:47536..479461691683132.7514863-CDS-L-elsbetiae_contig201:47536..47946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 47537..47946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig201.6038.1prot_L-elsbetiae_contig201.6038.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig201 46532..47946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig201.6038.1

>prot_L-elsbetiae_contig201.6038.1 ID=prot_L-elsbetiae_contig201.6038.1|Name=mRNA_L-elsbetiae_contig201.6038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
LTVGNRGAGVGLQASPLVPSDPVLAMQMGARLALTGHLNLIPFGDINTAT
GGSATAPAEFRAQPAAPPAAPPVGAIAAAGVGAAAVTAALANNNNNNNNN
TAVFSVAAAVPAPTAPAAPPGVLPAWTRLPHPPLWLKPDDHPPGLPSKPV
CSRPSNNTSLESGGAKAKAGAG
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mRNA from alignment at L-elsbetiae_contig201:46532..47948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig201.6038.1 ID=mRNA_L-elsbetiae_contig201.6038.1|Name=mRNA_L-elsbetiae_contig201.6038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1417bp|location=Sequence derived from alignment at L-elsbetiae_contig201:46532..47948+ (Laminarionema elsbetiae ELsaHSoW15)
CTTACTGTTGGTAACCGCGGGGCGGGGGTTGGGTTGCAGGCGTCTCCTCT
GGTTCCTTCAGACCCGGTGCTGGCGATGCAGATGGGGGCTCGGCTGGCCT
TGACGGGTGAGTTCGTCGTTTTTTGCGTTGTCTTCTGTCTTGAGGGGCAT
CAGTCTATGTTATGTACTTTAAAAGCTCGGGTCGTTTTTTCGTGGAGGGT
GGCGCGGCTTTGGGAACGTTATTACTTTTGGGGGGTTTGTGTTATGCTGA
CCGGAAGTCGTTTTCCCGGCCAGCCACCGCACCGTCTTTCCGAGACACAA
CCGTATCGTCGGGGGGGGGGGGGGGGGGGGTGCCGCGGAACGCGGGCGGG
ACCGAGCGGGCGGCGGCGGGGCTTTTTTTAGCCGTTTTTTTTCGAGTCTN
NNNNNNNNNGTTGGGCGTGGTGGCGCGGGCGGCCGTCTCTCGCCCCCCCC
GCCCCGGGCGCCTCGCAGTGGGTGCCGGCTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGCGTTACGCGGAACTCGTGCGGGATCAAGTCGGCGGCGGCGAG
GTCTATTGTAGCCATTGTTGTGCATGACTTTCATGACTTTCAGATGCGTA
CGGCTGTGTGAAAACCGATTTGATTCGAGGGGCTCATCTCCTTGCCTGGT
TGGTGGAAGTAGTCATACCTTGCGACCCTCTCATCCTTTCCGGTCCTCAA
TCTTAGGGGGCGGAGCGCGCTGAAGCGTTTGCCGCGTTTGGCGGGGCGGT
CAGGTTACACCAAGATTTATTTACCTCGAGGGGATAGGTTAAGGCAGTTT
CAGGTTAGCCGCAGGTGCTGGCGCGGCATCCATTCCTCATTCAAAGCGTT
CGATCGTTTAGGGTTAGGGTTGCTATGTAGGAGTATGTAATTCCGGCACT
TGCTTGTATGGCAAGCGTTTGCCTTGCGACAAATTAACCTTTGTTTTGTT
GCCCTCTCTCTCTCTCGCTTCCCTCGCTCGGTTGCCTTCCCCGCTGTCTC
ATCAGGGCATCTAAATCTCATTCCTTTCGGGGATATCAACACCGCAACCG
GGGGCTCCGCGACCGCGCCAGCAGAATTTCGGGCGCAACCGGCCGCCCCA
CCCGCGGCACCCCCGGTAGGGGCTATAGCAGCAGCAGGAGTGGGAGCGGC
GGCGGTTACGGCAGCACTAGCCAACAACAACAACAACAACAACAACAACA
CTGCTGTATTCTCGGTGGCAGCTGCGGTACCCGCACCCACAGCCCCCGCC
GCACCCCCCGGGGTGCTGCCGGCGTGGACAAGACTCCCGCACCCGCCCCT
GTGGCTCAAGCCGGACGATCATCCCCCAGGCTTGCCCTCAAAGCCGGTAT
GTTCCCGCCCTTCCAACAACACTTCTCTTGAGAGCGGCGGCGCGAAGGCG
AAGGCGGGGGCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig201:46532..47948+

>mRNA_L-elsbetiae_contig201.6038.1 ID=mRNA_L-elsbetiae_contig201.6038.1|Name=mRNA_L-elsbetiae_contig201.6038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig201:46532..47948+ (Laminarionema elsbetiae ELsaHSoW15)
CTTACTGTTGGTAACCGCGGGGCGGGGGTTGGGTTGCAGGCGTCTCCTCT
GGTTCCTTCAGACCCGGTGCTGGCGATGCAGATGGGGGCTCGGCTGGCCT
TGACGGCTTACTGTTGGTAACCGCGGGGCGGGGGTTGGGTTGCAGGCGTC
TCCTCTGGTTCCTTCAGACCCGGTGCTGGCGATGCAGATGGGGGCTCGGC
TGGCCTTGACGGGGCATCTAAATCTCATTCCTTTCGGGGATATCAACACC
GCAACCGGGGGCTCCGCGACCGCGCCAGCAGAATTTCGGGCGCAACCGGC
CGCCCCACCCGCGGCACCCCCGGTAGGGGCTATAGCAGCAGCAGGAGTGG
GAGCGGCGGCGGTTACGGCAGCACTAGCCAACAACAACAACAACAACAAC
AACAACACTGCTGTATTCTCGGTGGCAGCTGCGGTACCCGCACCCACAGC
CCCCGCCGCACCCCCCGGGGTGCTGCCGGCGTGGACAAGACTCCCGCACC
CGCCCCTGTGGCTCAAGCCGGACGATCATCCCCCAGGCTTGCCCTCAAAG
CCGGTATGTTCCCGCCCTTCCAACAACACTTCTCTTGAGAGCGGCGGCGC
GAAGGCGAAGGCGGGGGCGGGGGGCATCTAAATCTCATTCCTTTCGGGGA
TATCAACACCGCAACCGGGGGCTCCGCGACCGCGCCAGCAGAATTTCGGG
CGCAACCGGCCGCCCCACCCGCGGCACCCCCGGTAGGGGCTATAGCAGCA
GCAGGAGTGGGAGCGGCGGCGGTTACGGCAGCACTAGCCAACAACAACAA
CAACAACAACAACAACACTGCTGTATTCTCGGTGGCAGCTGCGGTACCCG
CACCCACAGCCCCCGCCGCACCCCCCGGGGTGCTGCCGGCGTGGACAAGA
CTCCCGCACCCGCCCCTGTGGCTCAAGCCGGACGATCATCCCCCAGGCTT
GCCCTCAAAGCCGGTATGTTCCCGCCCTTCCAACAACACTTCTCTTGAGA
GCGGCGGCGCGAAGGCGAAGGCGGGGGCGGGG
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