mRNA_L-elsbetiae_contig201.6037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig201.6037.1
Unique NamemRNA_L-elsbetiae_contig201.6037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig201.6037.1 vs. uniprot
Match: D8LKP0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.970e-16
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 2 
Query:   35 MDDLRAEGDFDDFAAAIGEGGDG-SDDDATSDDFLSWLLVHADTIDPKLNDLF---DNDEIAA 211
            MDD+  E DFDDFAAA+GEGGDG S+DDA SDDFLSWLLVHAD+IDPKL D     D  E+AA
Sbjct:    1 MDDILTEDDFDDFAAAVGEGGDGGSEDDARSDDFLSWLLVHADSIDPKLEDCVIGSDGSEVAA 63
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BLAST of mRNA_L-elsbetiae_contig201.6037.1 vs. uniprot
Match: A0A6H5J8M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.820e-16
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 2 
Query:   35 MDDLRAEGDFDDFAAAIGEGGDG-SDDDATSDDFLSWLLVHADTIDPKLND-LFDNDEIAAGSDLPLPA 235
            MDD+  E DFDDFAAA+GEGGDG S+DDA SDDFLSWLL+HAD+IDPKL+D + D+D    GS++  PA
Sbjct:    1 MDDILTEDDFDDFAAAVGEGGDGGSEDDARSDDFLSWLLLHADSIDPKLDDCVIDSD----GSEVAAPA 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig201.6037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP0_ECTSI6.970e-1671.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8M8_9PHAE9.820e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig201contigL-elsbetiae_contig201:45408..46462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig201.6037.1prot_L-elsbetiae_contig201.6037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig201 45439..46462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.914373-UTR-L-elsbetiae_contig201:45407..454381622815831.914373-UTR-L-elsbetiae_contig201:45407..45438Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig201 45408..45438 +
1691683132.397287-UTR-L-elsbetiae_contig201:45407..454381691683132.397287-UTR-L-elsbetiae_contig201:45407..45438Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig201 45408..45438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.9295306-CDS-L-elsbetiae_contig201:45438..455281622815831.9295306-CDS-L-elsbetiae_contig201:45438..45528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 45439..45528 +
1691683132.4089239-CDS-L-elsbetiae_contig201:45438..455281691683132.4089239-CDS-L-elsbetiae_contig201:45438..45528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 45439..45528 +
1622815831.9404223-CDS-L-elsbetiae_contig201:46102..464621622815831.9404223-CDS-L-elsbetiae_contig201:46102..46462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 46103..46462 +
1691683132.4235084-CDS-L-elsbetiae_contig201:46102..464621691683132.4235084-CDS-L-elsbetiae_contig201:46102..46462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 46103..46462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig201.6037.1

>prot_L-elsbetiae_contig201.6037.1 ID=prot_L-elsbetiae_contig201.6037.1|Name=mRNA_L-elsbetiae_contig201.6037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MMDDLRAEGDFDDFAAAIGEGGDGSDDDATSDDFLSWLLVHADTIDPKLN
DLFDNDEIAAGSDLPLPAGVAVAGSVGSVGSAAAATGTGASAAATALIDP
GLLAASLVVQAAPGTGMAPLQAGSSEGAPDGIPGGNACGVEAAASRQDER
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mRNA from alignment at L-elsbetiae_contig201:45408..46462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig201.6037.1 ID=mRNA_L-elsbetiae_contig201.6037.1|Name=mRNA_L-elsbetiae_contig201.6037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1055bp|location=Sequence derived from alignment at L-elsbetiae_contig201:45408..46462+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCTTCTGGCACTTGTGCTTGCCTGTCCCCATGATGGATGATCTTCGGG
CTGAGGGAGATTTCGATGACTTCGCTGCAGCTATCGGTGAAGGAGGAGAT
GGCAGCGATGACGACGCAACGGTAAAACATTGACCGAGACCGAACCTGGT
GCTACTCATTTTGATATGTGTCATGTATGACACCCCACACCCGCTCTACC
CGTGTCATCCCACGCACAGCCCGCGTTCGTTTACGTGACACTGCCTCAAG
TTCGATGCACTAAAATAATGCTTAAGTCAGCGTGTGGCAGTAGTAGAGGC
ACACATGAATGGGTAAAGAGAGCTGGTGAGGAACGCAGATGCTACAAACT
GCTGTCTCCTTGTGTGTTATGTATCCGATGCATGCAGGAAGTGTTCCAAA
GACGCCTCCTTCCATCGACGGCTTCACGAATTAATTTCGTGATGGCGTGC
GTGACATTCGTTTCCGAGGCACGCCTTCACAGCCAAGCTCTCGGCATTTT
TATCTTACGATGTAGACATAAGAATCAGCATACATATGTGGCCGCTATGT
TGGAAACCACCATTGGTGCTGCTACTGCTGCTGCTGCTGCTGTAGAGCTG
CCGTTCAATCTGATCTTGCGGTCGATCCCTAAATACAACATCCTGACCGC
CACTACCTCCAATACCGACATCTCGAATTCGGCGCTCGATCCCAGTCGGA
CGATTTTCTGAGCTGGCTGCTTGTGCACGCGGACACCATCGACCCGAAGC
TCAACGACCTCTTCGACAACGATGAAATCGCTGCCGGAAGTGATCTCCCT
CTTCCCGCTGGGGTAGCGGTTGCTGGTTCTGTTGGTTCTGTTGGTTCTGC
TGCTGCAGCTACTGGTACTGGTGCCAGTGCGGCGGCTACCGCTCTCATCG
ACCCTGGCCTTTTGGCAGCATCGCTTGTAGTACAAGCAGCCCCCGGAACG
GGCATGGCCCCCCTACAAGCAGGCAGCAGCGAGGGGGCCCCCGATGGTAT
CCCAGGAGGCAATGCTTGTGGTGTAGAAGCCGCCGCTTCAAGGCAGGACG
AGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig201:45408..46462+

>mRNA_L-elsbetiae_contig201.6037.1 ID=mRNA_L-elsbetiae_contig201.6037.1|Name=mRNA_L-elsbetiae_contig201.6037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig201:45408..46462+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGATGATCTTCGGGCTGAGGGAGATTTCGATGACTTCGCTGCAGC
TATCGGTGAAGGAGGAGATGGCAGCGATGACGACGCAACGATGATGGATG
ATCTTCGGGCTGAGGGAGATTTCGATGACTTCGCTGCAGCTATCGGTGAA
GGAGGAGATGGCAGCGATGACGACGCAACGTCGGACGATTTTCTGAGCTG
GCTGCTTGTGCACGCGGACACCATCGACCCGAAGCTCAACGACCTCTTCG
ACAACGATGAAATCGCTGCCGGAAGTGATCTCCCTCTTCCCGCTGGGGTA
GCGGTTGCTGGTTCTGTTGGTTCTGTTGGTTCTGCTGCTGCAGCTACTGG
TACTGGTGCCAGTGCGGCGGCTACCGCTCTCATCGACCCTGGCCTTTTGG
CAGCATCGCTTGTAGTACAAGCAGCCCCCGGAACGGGCATGGCCCCCCTA
CAAGCAGGCAGCAGCGAGGGGGCCCCCGATGGTATCCCAGGAGGCAATGC
TTGTGGTGTAGAAGCCGCCGCTTCAAGGCAGGACGAGAGGTCGGACGATT
TTCTGAGCTGGCTGCTTGTGCACGCGGACACCATCGACCCGAAGCTCAAC
GACCTCTTCGACAACGATGAAATCGCTGCCGGAAGTGATCTCCCTCTTCC
CGCTGGGGTAGCGGTTGCTGGTTCTGTTGGTTCTGTTGGTTCTGCTGCTG
CAGCTACTGGTACTGGTGCCAGTGCGGCGGCTACCGCTCTCATCGACCCT
GGCCTTTTGGCAGCATCGCTTGTAGTACAAGCAGCCCCCGGAACGGGCAT
GGCCCCCCTACAAGCAGGCAGCAGCGAGGGGGCCCCCGATGGTATCCCAG
GAGGCAATGCTTGTGGTGTAGAAGCCGCCGCTTCAAGGCAGGACGAGAGG
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