mRNA_L-elsbetiae_contig19989.5987.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19989.5987.1
Unique NamemRNA_L-elsbetiae_contig19989.5987.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19989.5987.1 vs. uniprot
Match: D7FY03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY03_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.690e-21
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 DERYRQKLSWCALDEETGQLDYLTEGLSPNGGRRMSTSSVGSSRTGG 141
            DERYRQKLSWCALDEETGQLDYLTEGLSP GGRRMSTSSVGSSRTGG
Sbjct:   49 DERYRQKLSWCALDEETGQLDYLTEGLSPKGGRRMSTSSVGSSRTGG 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19989.5987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY03_ECTSI6.690e-2197.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19989contigL-elsbetiae_contig19989:363..1400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002440.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1630685-CDS-L-elsbetiae_contig19989:362..4081622815825.1630685-CDS-L-elsbetiae_contig19989:362..408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19989 363..408 +
1691683127.3466156-CDS-L-elsbetiae_contig19989:362..4081691683127.3466156-CDS-L-elsbetiae_contig19989:362..408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19989 363..408 +
1622815825.1772225-CDS-L-elsbetiae_contig19989:1140..14001622815825.1772225-CDS-L-elsbetiae_contig19989:1140..1400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19989 1141..1400 +
1691683127.3604364-CDS-L-elsbetiae_contig19989:1140..14001691683127.3604364-CDS-L-elsbetiae_contig19989:1140..1400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19989 1141..1400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19989.5987.1prot_L-elsbetiae_contig19989.5987.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19989 363..1400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19989.5987.1

>prot_L-elsbetiae_contig19989.5987.1 ID=prot_L-elsbetiae_contig19989.5987.1|Name=mRNA_L-elsbetiae_contig19989.5987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
DERYRQKLSWCALDEETGQLDYLTEGLSPNGGRRMSTSSVGSSRTGGGGG
DRDRDRDSLLPNQAQQQQHDSADSSERSSGGGSGASGGGAGDDAASTLPR
EE
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mRNA from alignment at L-elsbetiae_contig19989:363..1400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19989.5987.1 ID=mRNA_L-elsbetiae_contig19989.5987.1|Name=mRNA_L-elsbetiae_contig19989.5987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig19989:363..1400+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGAGGTATCGCCAGAAGCTTAGCTGGTGTGCCCTGGACGAAGGTGG
GTCATGCCAGGCTGCTGCTGCTACATACATGCCTCTGGTGGTGCACGCTT
TTCAATTGGGAGAGCTACAGCCGTAGTGTCACCGCAGTTTTGACCACTGG
GTGTATTTTTTTGGATTTTTCGGGTTGGAGGGCACACGGGGGTGCGTGGC
TGGTGCCGATCGCCGATTGCTTGATTTTTGTATTTTTTTGGCTCTGTTGC
CCAAAGTTATATCCTACGTGTAAGAAGAGTCCGCCCCCTCCCCAATCTAA
CGCCGCCCAGCACCGATTCCCGATTTCTGGCTTCCGGCCTAAAATACGAC
CAAAAGCATGCCGTTTCAACGCCCCGCTGTTCTGCCTGCTATAATATGGT
ACTGGCGTGTACCCATCTATTTACCCTTCAAACTTTGCTGGTGGAGCCTC
GGGCGCATTGATGATCGACAGCGGCAGCACATATCATGCCTCACATCACA
CCTATGTACGTAGTAACACCAACCCCAACCCTACTTTTCTCACCCAAGCG
TATCTACACACGGCACCCCCCCCCCCCCCCCCCCCCCCCCCACCCGGGCC
AAAACCGGGCCCCCGGGCTCCCCCCCCCCGGGCCTGTGCCCTCCCCGGCG
GCGCCGGGTGTCCCCCNNNNNNNNNNCCCCCAAGTCATTATAAACCCCAC
CCCCCCCCCCCCTTTTCCCCCCCAAGCGCACCTCCCCCCGGCCCCCCCCC
CCCCCCCCCTCCCCTTCGAACCGGGCAGAAACCGGGCAGCTGGACTACCT
CACCGAGGGTCTGTCCCCTAACGGCGGTCGCCGGATGTCCACCTCGTCCG
TAGGGTCGTCGAGGACCGGGGGCGGGGGAGGGGATCGTGACCGCGACCGG
GATTCTCTGCTGCCCAACCAAGCCCAGCAGCAGCAGCACGACTCCGCGGA
CTCAAGCGAGCGCAGCTCGGGTGGAGGAAGCGGGGCCAGCGGTGGCGGCG
CCGGCGACGACGCGGCGTCTACGTTGCCGAGAGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19989:363..1400+

>mRNA_L-elsbetiae_contig19989.5987.1 ID=mRNA_L-elsbetiae_contig19989.5987.1|Name=mRNA_L-elsbetiae_contig19989.5987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig19989:363..1400+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGAGGTATCGCCAGAAGCTTAGCTGGTGTGCCCTGGACGAAGGACG
AGAGGTATCGCCAGAAGCTTAGCTGGTGTGCCCTGGACGAAGAAACCGGG
CAGCTGGACTACCTCACCGAGGGTCTGTCCCCTAACGGCGGTCGCCGGAT
GTCCACCTCGTCCGTAGGGTCGTCGAGGACCGGGGGCGGGGGAGGGGATC
GTGACCGCGACCGGGATTCTCTGCTGCCCAACCAAGCCCAGCAGCAGCAG
CACGACTCCGCGGACTCAAGCGAGCGCAGCTCGGGTGGAGGAAGCGGGGC
CAGCGGTGGCGGCGCCGGCGACGACGCGGCGTCTACGTTGCCGAGAGAGG
AGAAACCGGGCAGCTGGACTACCTCACCGAGGGTCTGTCCCCTAACGGCG
GTCGCCGGATGTCCACCTCGTCCGTAGGGTCGTCGAGGACCGGGGGCGGG
GGAGGGGATCGTGACCGCGACCGGGATTCTCTGCTGCCCAACCAAGCCCA
GCAGCAGCAGCACGACTCCGCGGACTCAAGCGAGCGCAGCTCGGGTGGAG
GAAGCGGGGCCAGCGGTGGCGGCGCCGGCGACGACGCGGCGTCTACGTTG
CCGAGAGAGGAG
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