mRNA_L-elsbetiae_contig1980.5916.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1980.5916.1 vs. uniprot
Match: D7FGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY9_ECTSI) HSP 1 Score: 717 bits (1852), Expect = 2.290e-228 Identity = 616/1530 (40.26%), Postives = 786/1530 (51.37%), Query Frame = 1
Query: 1 TAVLDSPRSVNSANSFETLASTSD-FFDXXXXXXXXXXXXXXXPATAEGDGNNQAR-----RRLGVVDRTLFESWRELPWQARVCPRAIEDQEVVRRTAALQTESLRVKAWRQEQQVLATXXXXXXXXXXXXXXXXXAEQLWALQSQRRRAHVELATRQEAELAARANQGADLLSAGYGNELAQLDGLDQRDHLARLKSIEALFEIAVADNRPKDAQDAATPGGAGICSGASEEG------EGADWVTPASILPTCTATVDASRLPPEEQEKITTDAKVQQRQXXXXXXGQPGGEIQDVQRPDEEDGGSLDSGRTERIFSQAQSELELVTLHASAAAMAAERFCRRRQSLAHLVYRGLAAVYRDVRTVARRMIVSECAADIGRIKQLVFTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTASPLFTKGDRGLCSDAAACSNNDNSTSNNLVGLAIDTEGENEKTARKTXXXXXXXXXXXEEAGLEAARSRESGRVTRELEIEANRVALWDKIQREVLRRSTSEVTELLAADSLRRAP---------VRGGRARTSGGA-ESIQALRKRARASMRELRRRQAAACMEARSIKRFWMTALARWAAQLVKARAAAISGEIEEFQILQQEDAEHARALERSRLLADVIDREQGAIDDGHSVLLVDLARIVAGNTEQEVAATAAARQNWWAEAREGLLSVFISAHNSRQTRQGSWLFARSGSDGKAVAVGVDAADDPAPEEAHLPVAPPLLPLIRTRLDELLREEEARAAKAKGNILAAADDTVEAGRSGREEAGEQRGPLHLAVAIKQRLSDEAIARCLDAIEAARSDLFARGGKRGQRIKEAHPAAENGSTTSSSREGSXXXXXSCGGDERRPRGTHPVPEQEELGLFLSSLEASAVQLAAASFEPEVRLLAIGAATPPTAAAEV-----AALPQPPPEATIEEKALTLPLSQDDPPGDMTRSQLDLRRTARVQAFARALAEMLCRGREALQRKELQVGEANEKEYARNVSVTVSRQSERVGELQTRARAQAEDALKDALTQVEIRCEGHFSRLKTAAEIRRRVVESAVRWIDAALETNLRKLERRRCSRREQEQNRAGTLENFERAALEEQREWLLRVREQRREATEVARTIIADHVADIVRQHRQXXXXXXXXXXXXXXXEESAGDMANT--------EGTAALD-------GGFADGGQTQ--------QQTTGDIDGIDXXXXXXX-------------------------GDVVVAAPSLDDQLRAEVVAALAAVESSCLSSVDAWAEEIRRRARELERCWAAEATSHDVEEHVTFKAELETLQLAFRAARKEAEEAVTD-CCRVLLLPPAGKQDGDGFDAVAGATASGTTSVAGSRNELATGGRAENKIPRNSVEEPMPSCVATAEQEECRVFWSSFEVPLASVQLELDTTKPVGTGGIPQQREGHAQEEEEGQAGERGRESAVCVITGLEADLRDELAETFSAKRRGEEVHAMIREGNEELRLAFLLIGEERRA 4362
TA+ SPRSVNSA+SF TLAST + F A A G GN A + LG+VDRTLF+SW+ELPWQAR+CP+AIE QEVVRR +AL+ E++RV+AWR+ QQ+LAT AE+LW +QSQRR++H LA R E ELAAR ++ +LLS GYG ELA+LD +D+ +HL L+ E LF AV D+ + T G+ + EG GA P + L T +V + R+P +++ T A +++ XXXXXX GE + VQ E D E+I S Q ELE V LH S ++F RRRQSLA +++ GL A+YRD R ARR VSECAADIGRIKQL + S XXXXXXXXXXX + F G SD C +D+ + D+ + + RKT G AA RE R TREL EA+RVA WDK+QR VLRRST EVT LL D LRR RG R GG ES A+ KRAR SMRELR RQA A +EAR I+R WM +LA+W AQLVKARA A E+ E +ILQ+EDAE ARALE S+ LA VIDREQ +DD S L+VDLA+IVA + A A AR++WWAEARE LL +F S H+S +W SG V VG+ + A A L IRT LDELLR EE KA + L A + G G GPLH+A QR ++E + RC EAA D +++ P N +T GG G PE EEL F LE AVQLA ASFE EVR AI AA P TA+ V A P E + + PL P D+TRSQLDL R ARV+AFAR + +ML R R+AL ++ LQ A E +Y VS +SR S ++ L+T +RA+ + AL+ AL + E E R KTAA IRRR + V W+ AA++ LR+ ERR +LENFER A EEQ++WL VR + EATEVART I+DHVA+++ RQ ++A D+++ EGT+ D G G Q T +G++ GDV V PSL+ LR E +A LAA E+SC+ +DAW EE RRR E+ W AEA S D+EE + ELETL+ AFRAARK+A+EAV+ CC L P+G AGA SGT A AT G E P EE +EEC W S E PL++ +L L T G+GG+ ++E+EG+ G+ + +A +ITGLE +LR + ++FS+ + EEV +MIR ++ELR+AF LI EE +A
Sbjct: 105 TALSASPRSVNSADSFGTLASTGEESFSLELDGNANGSLAQEGEADAVG-GNGTAEAGSASKGLGIVDRTLFDSWKELPWQARLCPKAIEGQEVVRRASALEMENIRVQAWRRTQQLLATSAAREEEQRISGWWKGEAEKLWRIQSQRRQSHETLAARHEGELAAREDKRTELLSKGYGRELAKLDSMDEANHLESLRQAEMLFSFAVGDSSIAEETRKPTSPKEGVTTSTVAEGLDTVAAPGAYATPPGTTLRT---SVRSPRVPDGREKEEGTLAGTKEQXXXXXXXN---GEARVVQETAEAD-------CIEKISSHVQLELERVALHESVMKATVDKFRRRRQSLAVILWCGLTAMYRDCRARARRTFVSECAADIGRIKQLASSPSSGGGSTGEGQNFPLSPXXXXXXXXXXXG---------TEDVLNEFCGSGSGTLSD---CGESDSGITRPSGVDVADSPPDVQDALRKTTATT---------GGPGAAGHRERTRATRELRSEASRVARWDKLQRGVLRRSTYEVTRLLTPDGLRRHDGGGWPNAWRQRGDRRGADGGVVESTLAVHKRARLSMRELRGRQADASLEARIIERSWMVSLAQWEAQLVKARAVAADAEVRELRILQREDAETARALEVSQSLARVIDREQNLVDDAQSSLVVDLAKIVADENAKRAEAAAVARRHWWAEARESLLDLFRSVHSS------NWNDQESGGGCADVDVGIHGGGSATEKPAATSSAS--LQRIRTSLDELLRAEEILIEKAATDFLTAVNADECGGGGG--------GPLHVAAVENQRYTNEVLERCTKTFEAASFDPPT------STVRQPTPVNLNQWSTE-------------GGSSSGHLGGAHNPE-EELASFRGRLETDAVQLAVASFEAEVRQWAIDAAIPETASEAVLPPCLAGAPSTMVEIEGKGSSPPFPLDGRPPSSDLTRSQLDLGRVARVKAFARTMEDMLSRTRKALLKETLQAATATENDYNLKVSSIISRHSGKISHLKTESRAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGPVVSWVGAAVDAELRRSERRXXXXXXXXXRIRASLENFERNASEEQQDWLRHVRGRGHEATEVARTAISDHVAELILHERQRQQDQEGRYEALSMAADTAKDLSSLQDCSSSAGEGTSTDDKDKPGEQGKMEQGEQLMALNQSALVMNTVAAAEGVNGDYVDDDHSGGNFPQPQFQGAKRQHVANQDGDGDVFVEPPSLEG-LRVEAMAVLAAAEASCMCDIDAWVEEARRRELEMISAWMAEAASGDIEEREMTETELETLESAFRAARKDADEAVSSACCEAYSLRPSGVSG-------AGAAPSGTEKTA-DPEPYATIGSTETAAPGFLAEE----------EEECSALWPSLERPLSTQKLALKTIA-AGSGGL-------CRDEKEGEEGKEAKLAASRIITGLECELRAVVTDSFSSTGKVEEVRSMIRASSDELRVAFTLISEETQA 1536
BLAST of mRNA_L-elsbetiae_contig1980.5916.1 vs. uniprot
Match: A0A6H5K2B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B6_9PHAE) HSP 1 Score: 630 bits (1624), Expect = 3.660e-195 Identity = 606/1584 (38.26%), Postives = 774/1584 (48.86%), Query Frame = 1
Query: 1 TAVLDSPRSVNSANSFETLASTSD-FFDXXXXXXXXXXXXXXXPATAEGDGNNQAR-----RRLGVVDRTLFESWRELPWQARVCPRAIEDQEVVRRTAALQTESL---------------RVKAWRQEQQVLATXXXXXXXXXXXXXXXXXAEQLWALQSQRRRAHVELATRQEAELAARANQGADLLSAGYGNELAQLDGLDQRDHLARLKSIEALFEIAVADNRPKDAQDAATPGGAGICSGASEEGEGADWVTPASILPTCTATVDASRLP--PEEQEKIT-TDAKVQQRQXXXXXXGQPGGEIQDVQRPDEEDGGSLDSGRTERIFSQAQSELELVTLHASAAAMAAERFCRRRQSLAHLVYRGLAAVYRDVRTVARRMIVSECAADIGRIKQLVFTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTASPLFTKGDRGLCSDAAACSNNDNSTSNNLVGLAI-DTEGENEKTARKTXXXXXXXXXXXEEAGLEAARSRESGRVTRELEIEANRVALWDKIQREVLRRSTSEVTELLAADSLRR-------------APVRGGRARTSGGAESIQALRKRARASMRELRRRQAAACMEARSIKRFWMTALARWAAQLVKARAAAISGEIEEFQILQQEDAE------------------------------HARALERSRLLADVIDREQGAIDDGHSVLLVDLARIVAGNTEQEVAATAAARQNWWAEAREGLLSVFISAHNSRQTRQGSWLFARSGSDGKAVAVGVDAADDPAPEEAHLPVAPPLLPLIRTRLDELLREEEARAAKAKGNILAAADDTVEAGRSGREEAGEQRGPLHLAVAIKQRLSDEAIARCLDAIEAARSDLFARGGKRGQRIKEAHPAAENGSTTSSSREGSXXXXXSCGGDERRPRGTHPVPEQEELGLFLSSLEASAVQLAAASFEPEVRLLAIGAATPPTAAAEVAALPQPPPEAT-----IEEKALTLPLSQDD--PPGDMTRSQLDLRRTARVQAFARALAEMLCRGREALQRKELQVGE----ANEKEYARNVSVTVSRQSERVGELQTRARAQAEDALKDALTQVEIRCEGHFSRLKTAAEIRRRVVESAVRWIDAALETNLRKLERRRCSRREQEQNRAGTLENFERAALEEQREWLLRVREQRREATEVARTIIADHVADIVRQHRQXXXXXXXXXXXXXXXEESAGDMANT--------EGTAAL---------DGGFADGGQTQ--------QQTTGDIDGIDXXXXXXX-------------------------GDVVVAAPSLDDQLRAEVVAALAAVESSCLSSVDAWAEEIRRRARELERCWAAEATSHDVEEHVTFKAELETLQLAFRAARKEAEEAVTD-CCRVLLLPPAGKQDGDGFDAVAGATASGTTSVAGSRNELATGGRAENKIPRNSVEEPMPSCVATAEQEECRVFWSSFEVPLASVQLELDTTKPVGTGGIPQQREGHAQEEEEGQAGERGRESAVCVITGLEADLRDELAETFSAKRRGEEVHAMIREGNEELRLAFLLIGEERRA 4362
TA+ SPRSVNSA+SF TLAST + F A A G N A R LG+V RTLF+SW+E WQ R+CP AIE QEVVRRT+AL+ E A R+E+Q ++ AE LW +QSQRR++H LA R E ELAA ++ +LLS G G ELA+LD +D+ +HL L+ +E LF AV + T AG+ +G + EG A P T ++R P P+ +EK T A +++ XXXXXX + VQ E D TE S Q ELE V LH S A++F RRRQSLA +++ GL A+YRD R ARR VSECAADIGRIKQL + S XXXXXXXXXXX ++ L CS C +DNS N G+ + D+ + + RKT E G+ A RE R TREL EA+RVA WDK+QREVLRRST EVT LL +D LRR RGG G A+S A+ KRAR SMRELR RQA +EARSI+R W+ +LA+W AQLVKARAAA E+ +ILQ+EDAE ARALE S+ LADVIDREQ +DD S L+VDLA+IVA + A A AR++WWAEARE LL +F S H+S + Q G V VG+ + + A A L LIRT LDELLR EE KA + L A + G G GPLH+A A QR ++E + RC A EAA D + + P N +T EG G R G H PE EEL F LE AVQLA ASF+ EVR LAI AA P AA A +P P A IE K P D P D+TRS LDLRR ARV+AFAR + +ML R+A+ KE Q G A E +Y VS + R S ++G L+T A+A+ + AL+ AL + E E R KTAA IRRR + S V W+ AA + LR+ ERR+ + +LE+FER A EEQ++WL +VR + EATEVAR I+DHVA+++ Q ++ D+++ EGT G G Q+ T +G++ GDV V PSL+ LR E +A LAA E+SC+ +DAW E+ RR E+ W AE S DVEE + ELETL+ AFRAAR + +E V+ CC L P+G AGA S T A + G S E P A E+EEC WSS E L+S++L L T P G+GG ++E+EG+ G + +A +ITGLE +LR + +TFS+ + EEV ++IR ++ELR+AF LI E +A
Sbjct: 105 TALSASPRSVNSADSFGTLASTGEESFSLELNDNANGSLAQEGEADAVGGNNGTAEAGSASRGLGIVGRTLFDSWKEFLWQVRLCPMAIEGQEVVRRTSALKMEMTGGSFSTSKGCSGLFCATSAAREEEQRIS------------GWWKGEAEILWRIQSQRRQSHETLAARHEEELAAHEDKRTELLSKGCGRELAKLDSMDEANHLESLRQVETLFSFAVGGRGTVEETRETTTPKAGVTTGTAAEGLFTVAAPGAHATPLGTTLRTSARPPGVPDGREKEEGTPAGTKEQXXXXXXXXXXXXXARVVQETAEAD-------CTENFSSHLQLELERVALHESVMKATADKFRRRRQSLAVILWCGLTAMYRDCRARARRTFVSECAADIGRIKQLASSPSSGGGSTGEGQNCPLSPXXXXXXXXXXXGTEDVLNEYCCISSDIL--------CS----CGESDNSI-NRPSGVDVTDSSPDVQDALRKTTATI-------ERPGV--AGQRERTRATRELRSEASRVARWDKLQREVLRRSTYEVTRLLTSDGLRRHDGGGWPYSWRQRGDRRGG---DDGVAKSTLAVHKRARLSMRELRGRQADVSLEARSIERSWIVSLAKWEAQLVKARAAAADAEVRGLRILQREDAEVGGRGRGRVGRAFSTSPNMVPPSLQQQNQQTARALEVSQSLADVIDREQDLVDDAQSALVVDLAKIVADENAKRAEAAAVARRHWWAEAREILLDLFHSVHSSNRNDQ------ERGGGCADVDVGIHGSGSATEKPAATSSAS--LQLIRTSLDELLRAEEILVEKAAKDFLTAVNADEYGGGGG--------GPLHVAAAENQRSTNEVLDRCTKAFEAASFDPST------STVGQPTPVNLNQWST----EG--------GSSSGRLGGAHN-PE-EELASFRGRLETDAVQLAVASFDMEVRELAIDAAIP--VAASEAVMPPCFPGAPSTMLEIEGKGSPPPFPLDGRPPSSDLTRSHLDLRRVARVKAFARTMEDMLSTARKAIL-KETQRGSVAATATENDYNLKVSSIIPRNSGKIGHLRTEAQAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGSVVSWVGAAADAELRRSERRQXXXXXHQHRIRASLEDFERIASEEQQDWLRQVRRRGHEATEVARATISDHVAELILHEPQREQDQEGGYEALPMAADTPRDLSSLQDRSSSAGEGTTCSTDDKDKPGEQGNMEQGEQSMALNHPALVMNTVAVAEGVNRDHVDDHHSGRKFPQPQFQGAKRQHVANQDDDGDVFVDPPSLEG-LRVEAMAVLAAAEASCICDIDAWVEKTLRRELEMISAWMAETASGDVEERDMTETELETLESAFRAARTDTDEVVSSACCEAYSLRPSGVSG-------AGAAPSETEEPANPEPDATIG----------STEFAAPGFFAE-EEEECSALWSSLERSLSSLKLALKTI-PAGSGGS-------RKDEKEGEEGIETKLAASRIITGLECELRAVVTDTFSSTGQVEEVQSIIRASSDELRVAFTLISEATQA 1578 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1980.5916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1980.5916.1 >prot_L-elsbetiae_contig1980.5916.1 ID=prot_L-elsbetiae_contig1980.5916.1|Name=mRNA_L-elsbetiae_contig1980.5916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1454bp TAVLDSPRSVNSANSFETLASTSDFFDDDDGIITAASAACAAPATAEGDGback to top mRNA from alignment at L-elsbetiae_contig1980:8920..16705- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1980.5916.1 ID=mRNA_L-elsbetiae_contig1980.5916.1|Name=mRNA_L-elsbetiae_contig1980.5916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7786bp|location=Sequence derived from alignment at L-elsbetiae_contig1980:8920..16705- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1980:8920..16705- >mRNA_L-elsbetiae_contig1980.5916.1 ID=mRNA_L-elsbetiae_contig1980.5916.1|Name=mRNA_L-elsbetiae_contig1980.5916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8724bp|location=Sequence derived from alignment at L-elsbetiae_contig1980:8920..16705- (Laminarionema elsbetiae ELsaHSoW15)back to top |