mRNA_L-elsbetiae_contig19715.5887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19715.5887.1
Unique NamemRNA_L-elsbetiae_contig19715.5887.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.060e-18
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 RDLADFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            + + DFSCAVESRILLHGRMYVT TFVCFYSNLFGFEKIIKIPF
Sbjct:   71 KPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 114
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.060e-18
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 RDLADFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            + + DFSCAVESRILLHGRMYVT TFVCFYSNLFGFEKIIKIPF
Sbjct:   32 KPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 75
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH)

HSP 1 Score: 73.9 bits (180), Expect = 2.200e-16
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    7 LADFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            L DFSCAVES +LLHGRMY++T F+CFYSNLFG EK I+IP+
Sbjct:    4 LLDFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPY 45
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.240e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            DFSCA+E +ILLHGR+YVT  F+CFYSNLFGFEK IKIP+
Sbjct:    2 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 41
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.320e-15
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            DFSCAVE +ILLHGRMYVT  F+CFYSNLFGFEK IKIP+
Sbjct:   44 DFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPY 83
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A836CDE2_9STRA (GRAM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.590e-14
Identity = 28/40 (70.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            DFSCAV+SR+L+HGR+Y+T   + FYSN+FGFEKII+IPF
Sbjct:    2 DFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPF 41
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.210e-14
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            DFSCA+E +ILLHGR+YVT  F+CFYSNLFGFEK IKIP+
Sbjct:   63 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 102
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.260e-14
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            DFSCA+E +ILLHGR+YVT  F+CFYSNLFGFEK IKIP+
Sbjct:  167 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 206
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   13 DFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            D SCAVES+ILLHGR+Y+T  FVCFYSN FGFEK IKIPF
Sbjct:  119 DASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPF 158
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BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Match: A0A7S1U683_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U683_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.740e-13
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 LADFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPF 132
            L+DFSC+VES++ LHG MYVTT F+CFYSN FG+EK I +P+
Sbjct:   41 LSDFSCSVESKMTLHGHMYVTTRFICFYSNFFGYEKKILLPY 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19715.5887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0Q2_9PHAE2.060e-1888.64VASt domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI2.060e-1888.64VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A482S830_9ARCH2.200e-1673.81GRAM domain-containing protein n=1 Tax=archaeon Ta... [more]
F0Y4G3_AURAN3.240e-1677.50GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2STC3_9STRA9.320e-1582.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CDE2_9STRA2.590e-1470.00GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8J2ST97_9STRA3.210e-1477.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NLX8_9STRA3.260e-1477.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TDU9_9STRA1.090e-1380.00Gram domain-containing protein 1a n=1 Tax=Nannochl... [more]
A0A7S1U683_9STRA1.740e-1366.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19715contigL-elsbetiae_contig19715:531..668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D7FKF6
Preferred nameVAD1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.3642821-CDS-L-elsbetiae_contig19715:530..6681622815817.3642821-CDS-L-elsbetiae_contig19715:530..668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19715 531..668 -
1691683122.1449585-CDS-L-elsbetiae_contig19715:530..6681691683122.1449585-CDS-L-elsbetiae_contig19715:530..668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19715 531..668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19715.5887.1prot_L-elsbetiae_contig19715.5887.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19715 531..668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19715.5887.1

>prot_L-elsbetiae_contig19715.5887.1 ID=prot_L-elsbetiae_contig19715.5887.1|Name=mRNA_L-elsbetiae_contig19715.5887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
RDLADFSCAVESRILLHGRMYVTTTFVCFYSNLFGFEKIIKIPFW*
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mRNA from alignment at L-elsbetiae_contig19715:531..668-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19715.5887.1 ID=mRNA_L-elsbetiae_contig19715.5887.1|Name=mRNA_L-elsbetiae_contig19715.5887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig19715:531..668- (Laminarionema elsbetiae ELsaHSoW15)
CGTGACCTCGCAGATTTCTCTTGCGCCGTGGAGAGCCGAATCTTACTCCA
TGGCCGGATGTACGTCACAACCACCTTCGTGTGCTTCTACTCGAATCTGT
TCGGGTTTGAGAAAATCATCAAGATACCTTTCTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19715:531..668-

>mRNA_L-elsbetiae_contig19715.5887.1 ID=mRNA_L-elsbetiae_contig19715.5887.1|Name=mRNA_L-elsbetiae_contig19715.5887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig19715:531..668- (Laminarionema elsbetiae ELsaHSoW15)
CGTGACCTCGCAGATTTCTCTTGCGCCGTGGAGAGCCGAATCTTACTCCA
TGGCCGGATGTACGTCACAACCACCTTCGTGTGCTTCTACTCGAATCTGT
TCGGGTTTGAGAAAATCATCAAGATACCTTTCTGGTGACGTGACCTCGCA
GATTTCTCTTGCGCCGTGGAGAGCCGAATCTTACTCCATGGCCGGATGTA
CGTCACAACCACCTTCGTGTGCTTCTACTCGAATCTGTTCGGGTTTGAGA
AAATCATCAAGATACCTTTCTGGTGA
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