mRNA_L-elsbetiae_contig1961.5847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1961.5847.1
Unique NamemRNA_L-elsbetiae_contig1961.5847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1961.5847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1961contigL-elsbetiae_contig1961:15425..16603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1961.5847.1prot_L-elsbetiae_contig1961.5847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1961 15594..16603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.6960387-UTR-L-elsbetiae_contig1961:15424..155931622815813.6960387-UTR-L-elsbetiae_contig1961:15424..15593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1961 15425..15593 +
1691683119.808284-UTR-L-elsbetiae_contig1961:15424..155931691683119.808284-UTR-L-elsbetiae_contig1961:15424..15593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1961 15425..15593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.7115746-CDS-L-elsbetiae_contig1961:15593..157341622815813.7115746-CDS-L-elsbetiae_contig1961:15593..15734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 15594..15734 +
1691683119.8172407-CDS-L-elsbetiae_contig1961:15593..157341691683119.8172407-CDS-L-elsbetiae_contig1961:15593..15734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 15594..15734 +
1622815813.7211218-CDS-L-elsbetiae_contig1961:16522..166031622815813.7211218-CDS-L-elsbetiae_contig1961:16522..16603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 16523..16603 +
1691683119.8255007-CDS-L-elsbetiae_contig1961:16522..166031691683119.8255007-CDS-L-elsbetiae_contig1961:16522..16603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1961 16523..16603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1961.5847.1

>prot_L-elsbetiae_contig1961.5847.1 ID=prot_L-elsbetiae_contig1961.5847.1|Name=mRNA_L-elsbetiae_contig1961.5847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MGGNTVNVGSWSLMVSSPSWGCTAGVSDGQLGLNRGWKGHAGAVVKPRTC
HGHSCRRHRRRGRRCRPTAAVRAA
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mRNA from alignment at L-elsbetiae_contig1961:15425..16603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1961.5847.1 ID=mRNA_L-elsbetiae_contig1961.5847.1|Name=mRNA_L-elsbetiae_contig1961.5847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1179bp|location=Sequence derived from alignment at L-elsbetiae_contig1961:15425..16603+ (Laminarionema elsbetiae ELsaHSoW15)
TGACGGAGGGAACACTGGTGCAGTGCGTCTCAAGATTCATACGAGCCCTA
CGGCGTGCTTCGCGGCTGTGATTTAGGAAGCTTTGTTCGGGTGGACCGTT
CCTTGCGAGCTCCCTGATTGAGCGTGAGAGAGAGAGGCTTGCAGCTTGGG
GAACCGACTGCCCCAACAGATGGGAGGTAACACCGTCAACGTGGGATCTT
GGTCGCTCATGGTAAGCTCGCCATCTTGGGGGTGCACGGCAGGGGTTAGT
GATGGACAACTTGGATTGAATCGCGGTTGGAAAGGGCACGCCGGAGCCGT
TGTGAAACCGGTGAGTTTTCTTCATGTTTTGCACAAGCAAGTACACCACA
TGCACCACAAGCGTGCTGCTGCTTGCTGCAGTAGTAGCGCCTCCCGCTGC
TGTGCCTTTAGACCTTCTGGCCCCTTCATGGGAGGCGTCGGGGTGCGTGC
GCGTGTTTGCGTCTGAAGGGATAGCTGCTGTTGCACAGGCAGCAACGGGG
CCGCCGACGAAACGTGCCCCCAGGCGGTGGATAGCCCGCTTTACCGCAGT
ACTACTACTGTATTGTAGTGACAAGTGGCGGACGGACCGATCATGCCTCT
TGGGTACGTACATAAAGAAAAACACGACACAGAGCGAGGGGCGGTGCCCA
GCGCAGCTATGCAGTGCTGCCACAGAGACAGCACCGCGTGCTGCTCCTCC
TGCGTGCGTGCGCTCGTGTGGATGGTGCGTTTTGACGCGTGAAACAAGTG
CTGCAACCTACCCTGGAACGTAACGCAAACGAAGGTGCCCGTCTGTCTCA
CGCTCGGCCGTTTAGATAGCCCCCCCCCCCTACATCATTTTCAGAGTCCC
CCCGACCACAACAGTAAAATAAGGTATCTACCGTAGTGTCATGTTATTTC
GCAGTCCTCGCGCGATGTTGCTTCGCCTCGACGAATACACATGAACGTTT
GCTAGATAAGCCTACCGGTACATTCTGTTGCACTCCACCTGCTTGTACCC
CTCCTTGGCTCTCCGACTCCATCCGTTCAGAATCAAACCTTGAAAATTAA
AGAGGCAGCCCCGTCCACCACCATCCTCTCGCTTTCCGCTCGTTCCAGCG
CACCTGCCACGGGCATTCCTGCCGCCGCCACCGCCGCCGCGGCCGCCGCT
GCCGCCCGACAGCGGCGGTACGAGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1961:15425..16603+

>mRNA_L-elsbetiae_contig1961.5847.1 ID=mRNA_L-elsbetiae_contig1961.5847.1|Name=mRNA_L-elsbetiae_contig1961.5847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig1961:15425..16603+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGTAACACCGTCAACGTGGGATCTTGGTCGCTCATGGTAAGCTC
GCCATCTTGGGGGTGCACGGCAGGGGTTAGTGATGGACAACTTGGATTGA
ATCGCGGTTGGAAAGGGCACGCCGGAGCCGTTGTGAAACCGATGGGAGGT
AACACCGTCAACGTGGGATCTTGGTCGCTCATGGTAAGCTCGCCATCTTG
GGGGTGCACGGCAGGGGTTAGTGATGGACAACTTGGATTGAATCGCGGTT
GGAAAGGGCACGCCGGAGCCGTTGTGAAACCGCGCACCTGCCACGGGCAT
TCCTGCCGCCGCCACCGCCGCCGCGGCCGCCGCTGCCGCCCGACAGCGGC
GGTACGAGCAGCACGCACCTGCCACGGGCATTCCTGCCGCCGCCACCGCC
GCCGCGGCCGCCGCTGCCGCCCGACAGCGGCGGTACGAGCAGCA
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