mRNA_L-elsbetiae_contig19572.5830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19572.5830.1
Unique NamemRNA_L-elsbetiae_contig19572.5830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: D7FWD5_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD5_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.730e-29
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             RFSDFRWLHSCF+AIPGVL PPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP
Sbjct:  274 RRFSDFRWLHSCFQAIPGVLVPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 329
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A6H5KCW0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.750e-29
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             RFSDFRWLHSCF+AIPGVL PPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP
Sbjct:  290 RRFSDFRWLHSCFQAIPGVLVPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 345
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A7S4DJH7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DJH7_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.610e-6
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCF-RAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQH 168
             R+SDF WL     +  PG + PPLP     G    +FV++RM+GL+R+ TRV  H
Sbjct:   91 RRYSDFVWLRQALEKNFPGCIVPPLPEKAVIGRFQGEFVSQRMRGLERFTTRVMNH 146
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A7S3YJG0_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YJG0_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-6
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCF-RAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQH 168
             R+SDF WL     +  PG + PPLP     G    +FV++RM+GL+R+ TRV  H
Sbjct:   91 RRYSDFVWLRQALEKNFPGCIVPPLPEKAVIGRFQGEFVSQRMRGLERFTTRVMNH 146
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A7S3YJG7_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YJG7_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 2.100e-6
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCF-RAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQH 168
             R+SDF WL     +  PG + PPLP     G    +FV++RM+GL+R+ TRV  H
Sbjct:   91 RRYSDFVWLRQALEKNFPGCIVPPLPEKAVIGRFQGEFVSQRMRGLERFTTRVMNH 146
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A7J7KTN0_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KTN0_BUGNE)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-5
Identity = 23/57 (40.35%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCF-RAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             R+  F WL   F    P ++ PPLP  +  G    +F+ ERMK LQ ++TR+A HP
Sbjct:  274 RRYKHFDWLIGRFVEKYPTIVIPPLPDKQMTGRYEEEFINERMKQLQEWVTRIANHP 330
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A812ESQ0_SEPPH (Sorting nexin n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812ESQ0_SEPPH)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-5
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 NRFSDFRWLHSCFRA-IPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             R+  F WLH       P +  PPLP    +G    DFV ERMK LQR++TR+ +HP
Sbjct:  255 RRYKHFDWLHERLEEKFPCIPVPPLPEKAISGRYEDDFVNERMKLLQRWVTRMVRHP 311
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A183VZB1_TRIRE (PX domain-containing protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183VZB1_TRIRE)

HSP 1 Score: 48.5 bits (114), Expect = 2.570e-5
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:    4 NRFSDFRWLHS-CFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             R+  F WLHS      P +  PPLP     G    DFV ER K LQ+++TR+ +HP
Sbjct:    7 RRYKHFDWLHSRLLSKYPCICIPPLPEKAITGRYEDDFVDERRKWLQQWLTRMCKHP 63
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A5F8H2J4_MONDO (PX domain containing serine/threonine kinase like n=1 Tax=Monodelphis domestica TaxID=13616 RepID=A0A5F8H2J4_MONDO)

HSP 1 Score: 48.1 bits (113), Expect = 2.750e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 LNRFSDFRWLHSCFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYM 150
            + R+SDF  L+S  + I G L  PLPP K  G+  R+F+AER KGLQRY+
Sbjct:   53 VRRYSDFDLLNSSLQ-ISG-LSLPLPPKKLIGNMEREFIAERQKGLQRYL 100
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BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Match: A0A4Z2D6Y0_SCHJA (Sorting nexin-33 isoform 2 n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2D6Y0_SCHJA)

HSP 1 Score: 48.5 bits (114), Expect = 4.810e-5
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1 
Query:    4 NRFSDFRWLHS-CFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYMTRVAQHP 171
             R+  F WLHS      P V  PPLP     G    DFV ER K LQ+++TR+  HP
Sbjct:  215 RRYKHFDWLHSRLLSKYPCVCIPPLPEKAITGRYEDDFVDERRKWLQQWLTRMCMHP 271
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19572.5830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FWD5_ECTSI3.730e-2994.64PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KCW0_9PHAE3.750e-2994.64PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S4DJH7_9EUKA1.610e-642.86Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3YJG0_9EUKA2.020e-642.86Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S3YJG7_9EUKA2.100e-642.86Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]
A0A7J7KTN0_BUGNE1.900e-540.35Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A812ESQ0_SEPPH1.900e-543.86Sorting nexin n=1 Tax=Sepia pharaonis TaxID=158019... [more]
A0A183VZB1_TRIRE2.570e-542.11PX domain-containing protein n=1 Tax=Trichobilharz... [more]
A0A5F8H2J4_MONDO2.750e-552.00PX domain containing serine/threonine kinase like ... [more]
A0A4Z2D6Y0_SCHJA4.810e-543.86Sorting nexin-33 isoform 2 n=1 Tax=Schistosoma jap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19572contigL-elsbetiae_contig19572:1539..1709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue7.2e-25
Seed eggNOG ortholog2880.D7FWD5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsCOG5391@1,KOG2527@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.9845135-CDS-L-elsbetiae_contig19572:1538..17091622815811.9845135-CDS-L-elsbetiae_contig19572:1538..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19572 1539..1709 +
1691683118.5311084-CDS-L-elsbetiae_contig19572:1538..17091691683118.5311084-CDS-L-elsbetiae_contig19572:1538..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19572 1539..1709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19572.5830.1prot_L-elsbetiae_contig19572.5830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19572 1539..1709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19572.5830.1

>prot_L-elsbetiae_contig19572.5830.1 ID=prot_L-elsbetiae_contig19572.5830.1|Name=mRNA_L-elsbetiae_contig19572.5830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
LNRFSDFRWLHSCFRAIPGVLPPPLPPSKWAGSSSRDFVAERMKGLQRYM
TRVAQHP
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mRNA from alignment at L-elsbetiae_contig19572:1539..1709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19572.5830.1 ID=mRNA_L-elsbetiae_contig19572.5830.1|Name=mRNA_L-elsbetiae_contig19572.5830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig19572:1539..1709+ (Laminarionema elsbetiae ELsaHSoW15)
TTGAACAGATTCAGCGACTTTCGCTGGCTCCACAGCTGCTTCAGAGCCAT
CCCGGGCGTGCTGCCGCCGCCGCTGCCCCCATCCAAGTGGGCCGGTAGCA
GCAGCCGGGACTTCGTGGCCGAGCGCATGAAGGGCCTGCAGCGCTACATG
ACGAGGGTGGCGCAGCACCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19572:1539..1709+

>mRNA_L-elsbetiae_contig19572.5830.1 ID=mRNA_L-elsbetiae_contig19572.5830.1|Name=mRNA_L-elsbetiae_contig19572.5830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig19572:1539..1709+ (Laminarionema elsbetiae ELsaHSoW15)
TTGAACAGATTCAGCGACTTTCGCTGGCTCCACAGCTGCTTCAGAGCCAT
CCCGGGCGTGCTGCCGCCGCCGCTGCCCCCATCCAAGTGGGCCGGTAGCA
GCAGCCGGGACTTCGTGGCCGAGCGCATGAAGGGCCTGCAGCGCTACATG
ACGAGGGTGGCGCAGCACCCGTTGAACAGATTCAGCGACTTTCGCTGGCT
CCACAGCTGCTTCAGAGCCATCCCGGGCGTGCTGCCGCCGCCGCTGCCCC
CATCCAAGTGGGCCGGTAGCAGCAGCCGGGACTTCGTGGCCGAGCGCATG
AAGGGCCTGCAGCGCTACATGACGAGGGTGGCGCAGCACCCG
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