mRNA_L-elsbetiae_contig19434.5771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19434.5771.1
Unique NamemRNA_L-elsbetiae_contig19434.5771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A7J6UUN2_THATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1 protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6UUN2_THATH)

HSP 1 Score: 80.5 bits (197), Expect = 7.690e-19
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            +RTTGAPQNHWFGPAGDPR AGIGT EAIR VWSCHR V +   P+
Sbjct:   26 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIRFVWSCHREVIYDVGPV 71
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A813A117_9DINO (ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A117_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 8.090e-19
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYV 117
            +RTTGAPQNHWFGPAGDPRAAGIG+IEAI++VWSCHR V
Sbjct:   41 ARTTGAPQNHWFGPAGDPRAAGIGSIEAIQLVWSCHREV 79
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: C7J2F0_ORYSJ (Os05g0536400 protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J2F0_ORYSJ)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-18
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            +RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR + +   P+
Sbjct:   36 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPL 81
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A1R3JL78_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JL78_COCAP)

HSP 1 Score: 82.8 bits (203), Expect = 1.710e-18
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            +RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR + + F P+
Sbjct:  144 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPL 189
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A383WGG6_TETOB (Aldedh domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WGG6_TETOB)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-18
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQP 135
            +RTTGAPQNHWFGPAGDPR AGIGT EAIR+VWSCHR V H F P
Sbjct:  501 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHREVIHDFGP 545
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A7J7QET1_9CHLO (Aldehyde dehydrogenase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QET1_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-18
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQP 135
            +RTTGAPQNHWFGPAGDPR AGIGT EAIR+VWSCHR V H F P
Sbjct:  503 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHREVIHDFGP 547
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A6N2LWK2_SALVM (Uncharacterized protein n=2 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LWK2_SALVM)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-18
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR V + F P+
Sbjct:  166 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDFGPL 210
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A0D3AYE1_BRAOL (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3AYE1_BRAOL)

HSP 1 Score: 80.9 bits (198), Expect = 2.940e-18
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR + + + P+
Sbjct:   92 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDYGPV 136
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A1D6MB72_MAIZE (Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MB72_MAIZE)

HSP 1 Score: 80.1 bits (196), Expect = 3.150e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM 138
            +RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR V +   P+
Sbjct:   66 ARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDVGPV 111
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BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Match: A0A6H5J7Q9_9PHAE (Aldedh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.460e-18
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYV 117
            +RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR V
Sbjct:  409 ARTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHREV 447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19434.5771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6UUN2_THATH7.690e-1976.09Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1... [more]
A0A813A117_9DINO8.090e-1987.18ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
C7J2F0_ORYSJ1.010e-1871.74Os05g0536400 protein (Fragment) n=1 Tax=Oryza sati... [more]
A0A1R3JL78_COCAP1.710e-1873.91Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A383WGG6_TETOB2.040e-1882.22Aldedh domain-containing protein n=1 Tax=Tetradesm... [more]
A0A7J7QET1_9CHLO2.040e-1882.22Aldehyde dehydrogenase n=1 Tax=Scenedesmus sp. NRE... [more]
A0A6N2LWK2_SALVM2.580e-1877.78Uncharacterized protein n=2 Tax=Salix viminalis Ta... [more]
A0A0D3AYE1_BRAOL2.940e-1873.33Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A1D6MB72_MAIZE3.150e-1873.91Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea m... [more]
A0A6H5J7Q9_9PHAE3.460e-1894.87Aldedh domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19434contigL-elsbetiae_contig19434:405..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.2e-15
Seed eggNOG ortholog2880.D7G0R3
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG koko:K00294
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,map00250,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006562,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0010133,GO:0016054,GO:0016491,GO:0016645,GO:0016646,GO:0019752,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055114,GO:0071704,GO:0072593,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.succinate-semialdehyde dehydrogenase (NAD ) activity
EggNOG OGsCOG1012@1,KOG2451@2759
EC1.2.1.88
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.5344515-CDS-L-elsbetiae_contig19434:404..5421622815806.5344515-CDS-L-elsbetiae_contig19434:404..542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19434 405..542 +
1691683114.9076192-CDS-L-elsbetiae_contig19434:404..5421691683114.9076192-CDS-L-elsbetiae_contig19434:404..542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19434 405..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19434.5771.1prot_L-elsbetiae_contig19434.5771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19434 405..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19434.5771.1

>prot_L-elsbetiae_contig19434.5771.1 ID=prot_L-elsbetiae_contig19434.5771.1|Name=mRNA_L-elsbetiae_contig19434.5771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
SRTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHRYVRHGFQPM
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mRNA from alignment at L-elsbetiae_contig19434:405..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19434.5771.1 ID=mRNA_L-elsbetiae_contig19434.5771.1|Name=mRNA_L-elsbetiae_contig19434.5771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig19434:405..542+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGGACGACGGGCGCCCCTCAAAACCACTGGTTCGGGCCCGCCGGAGA
CCCGAGGGCTGCAGGAATTGGCACCATCGAGGCCATCAGAATGGTCTGGT
CCTGCCACAGGTATGTACGCCATGGATTCCAACCTATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19434:405..542+

>mRNA_L-elsbetiae_contig19434.5771.1 ID=mRNA_L-elsbetiae_contig19434.5771.1|Name=mRNA_L-elsbetiae_contig19434.5771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig19434:405..542+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGGACGACGGGCGCCCCTCAAAACCACTGGTTCGGGCCCGCCGGAGA
CCCGAGGGCTGCAGGAATTGGCACCATCGAGGCCATCAGAATGGTCTGGT
CCTGCCACAGGTATGTACGCCATGGATTCCAACCTATGTCCAGGACGACG
GGCGCCCCTCAAAACCACTGGTTCGGGCCCGCCGGAGACCCGAGGGCTGC
AGGAATTGGCACCATCGAGGCCATCAGAATGGTCTGGTCCTGCCACAGGT
ATGTACGCCATGGATTCCAACCTATG
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