mRNA_L-elsbetiae_contig1942.5762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1942.5762.1
Unique NamemRNA_L-elsbetiae_contig1942.5762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1942.5762.1 vs. uniprot
Match: D7G2M4_ECTSI (Eukaryotic translation initiation factor 1-SUI1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M4_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.580e-7
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -2 
Query:    3 SCNGAIVSDAEGGDIVQMSGDQRTNIH 83
            SCNGAIVSD EGG+IVQMSGDQRTNIH
Sbjct:   63 SCNGAIVSDTEGGEIVQMSGDQRTNIH 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1942.5762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2M4_ECTSI6.580e-792.59Eukaryotic translation initiation factor 1-SUI1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1942contigL-elsbetiae_contig1942:2166..2654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size489
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1942.5762.1prot_L-elsbetiae_contig1942.5762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1942 2258..2569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.650798-UTR-L-elsbetiae_contig1942:2165..22571622815805.650798-UTR-L-elsbetiae_contig1942:2165..2257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1942 2166..2257 +
1691683114.3779976-UTR-L-elsbetiae_contig1942:2165..22571691683114.3779976-UTR-L-elsbetiae_contig1942:2165..2257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1942 2166..2257 +
1622815805.7047374-UTR-L-elsbetiae_contig1942:2569..26541622815805.7047374-UTR-L-elsbetiae_contig1942:2569..2654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1942 2570..2654 +
1691683114.3963182-UTR-L-elsbetiae_contig1942:2569..26541691683114.3963182-UTR-L-elsbetiae_contig1942:2569..2654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1942 2570..2654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.6949904-CDS-L-elsbetiae_contig1942:2257..25691622815805.6949904-CDS-L-elsbetiae_contig1942:2257..2569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 2258..2569 +
1691683114.3869305-CDS-L-elsbetiae_contig1942:2257..25691691683114.3869305-CDS-L-elsbetiae_contig1942:2257..2569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1942 2258..2569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1942.5762.1

>prot_L-elsbetiae_contig1942.5762.1 ID=prot_L-elsbetiae_contig1942.5762.1|Name=mRNA_L-elsbetiae_contig1942.5762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MATKIWGKRWYVCRSKYVVHGLLAVSSFQLLVMVTHQGSSSPACRLQRAG
LNEAKWLVIQTSERTNTGTTENRAAWSCATSRYLHTQTHTHTASTLDCNL
AYT*
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mRNA from alignment at L-elsbetiae_contig1942:2166..2654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1942.5762.1 ID=mRNA_L-elsbetiae_contig1942.5762.1|Name=mRNA_L-elsbetiae_contig1942.5762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig1942:2166..2654+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTGAATGTTCGTCCGTTGGTCTCCGGACATCTGCACAATGTCCCCGCC
CTCCGCATCGCTCACGATCGCACCGTTGCAGCTGGGGACAAGATGGCGAC
GAAGATATGGGGGAAACGCTGGTATGTATGTAGAAGTAAGTATGTTGTAC
ACGGGCTGCTTGCTGTGTCGAGCTTCCAACTACTGGTCATGGTCACGCAT
CAAGGTTCGTCGAGTCCTGCTTGCCGTCTGCAGCGGGCAGGGCTGAATGA
GGCAAAATGGCTTGTGATCCAAACCTCAGAGAGAACAAACACGGGAACGA
CGGAGAACAGAGCAGCCTGGTCGTGCGCAACAAGTCGTTACCTCCATACA
CAAACACACACACACACAGCATCAACACTCGACTGCAACCTAGCCTACAC
CTAAATACAGCAGCCGTGCGTGACCACTGGGGACTGAAGACGCACCTGAA
GTTCTTCTTGAAGGCCTTAAGGATTCGCTTCAGGTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1942:2166..2654+

>mRNA_L-elsbetiae_contig1942.5762.1 ID=mRNA_L-elsbetiae_contig1942.5762.1|Name=mRNA_L-elsbetiae_contig1942.5762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1942:2166..2654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGAAGATATGGGGGAAACGCTGGTATGTATGTAGAAGTAAGTA
TGTTGTACACGGGCTGCTTGCTGTGTCGAGCTTCCAACTACTGGTCATGG
TCACGCATCAAGGTTCGTCGAGTCCTGCTTGCCGTCTGCAGCGGGCAGGG
CTGAATGAGGCAAAATGGCTTGTGATCCAAACCTCAGAGAGAACAAACAC
GGGAACGACGGAGAACAGAGCAGCCTGGTCGTGCGCAACAAGTCGTTACC
TCCATACACAAACACACACACACACAGCATCAACACTCGACTGCAACCTA
GCCTACACCTAAATGGCGACGAAGATATGGGGGAAACGCTGGTATGTATG
TAGAAGTAAGTATGTTGTACACGGGCTGCTTGCTGTGTCGAGCTTCCAAC
TACTGGTCATGGTCACGCATCAAGGTTCGTCGAGTCCTGCTTGCCGTCTG
CAGCGGGCAGGGCTGAATGAGGCAAAATGGCTTGTGATCCAAACCTCAGA
GAGAACAAACACGGGAACGACGGAGAACAGAGCAGCCTGGTCGTGCGCAA
CAAGTCGTTACCTCCATACACAAACACACACACACACAGCATCAACACTC
GACTGCAACCTAGCCTACACCTAA
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