mRNA_L-elsbetiae_contig1940.5751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1940.5751.1
Unique NamemRNA_L-elsbetiae_contig1940.5751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1940.5751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1940contigL-elsbetiae_contig1940:12133..12646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size515
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.6880097-CDS-L-elsbetiae_contig1940:12132..124801622815804.6880097-CDS-L-elsbetiae_contig1940:12132..12480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 12133..12480 +
1691683113.733206-CDS-L-elsbetiae_contig1940:12132..124801691683113.733206-CDS-L-elsbetiae_contig1940:12132..12480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1940 12133..12480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815804.6987088-UTR-L-elsbetiae_contig1940:12480..126461622815804.6987088-UTR-L-elsbetiae_contig1940:12480..12646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 12481..12646 +
1691683113.7444477-UTR-L-elsbetiae_contig1940:12480..126461691683113.7444477-UTR-L-elsbetiae_contig1940:12480..12646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1940 12481..12646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1940.5751.1prot_L-elsbetiae_contig1940.5751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1940 12133..12480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1940.5751.1

>prot_L-elsbetiae_contig1940.5751.1 ID=prot_L-elsbetiae_contig1940.5751.1|Name=mRNA_L-elsbetiae_contig1940.5751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
SCCVFFIISLLEATTYKQHPLFCVVKLIFGVFTPLPPKEPSFRGWADSPQ
VFRGVLVEQRFESPPVQKHESLLSLAGSLFFLFTSELSTFSVPLPIRCTY
STCSPPHTPKRGFCF*
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mRNA from alignment at L-elsbetiae_contig1940:12133..12646+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1940.5751.1 ID=mRNA_L-elsbetiae_contig1940.5751.1|Name=mRNA_L-elsbetiae_contig1940.5751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=514bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:12133..12646+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGCTGTGTGTTTTTTATTATCTCCCTCCTCGAAGCAACGACCTACAA
ACAACACCCACTCTTTTGTGTCGTCAAATTAATCTTTGGTGTTTTTACCC
CCCTCCCCCCAAAAGAACCAAGCTTTCGTGGATGGGCAGACAGCCCCCAG
GTTTTTCGCGGCGTACTCGTAGAGCAGCGCTTTGAGTCTCCTCCCGTCCA
AAAACACGAATCGCTTCTCTCGCTCGCCGGCTCTCTTTTCTTCCTCTTCA
CGTCAGAACTAAGCACGTTTTCTGTGCCCCTTCCTATACGCTGCACGTAC
TCTACGTGCTCCCCACCCCACACCCCGAAGAGAGGCTTCTGTTTTTAAAG
CCAACACATCCTCATGCAATACACATAAATCTCCCGTTTGAACAAAACCA
CAGCCCGCTTTGAGCAACGACATGCGGCTGACTGGCTGGCTGTATCTATC
TGGCTGTTGTGTGTTTTTTTTTAAACGCATGCGACATGAACGCCATCATG
TCATCCACAACACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1940:12133..12646+

>mRNA_L-elsbetiae_contig1940.5751.1 ID=mRNA_L-elsbetiae_contig1940.5751.1|Name=mRNA_L-elsbetiae_contig1940.5751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1940:12133..12646+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGCTGTGTGTTTTTTATTATCTCCCTCCTCGAAGCAACGACCTACAA
ACAACACCCACTCTTTTGTGTCGTCAAATTAATCTTTGGTGTTTTTACCC
CCCTCCCCCCAAAAGAACCAAGCTTTCGTGGATGGGCAGACAGCCCCCAG
GTTTTTCGCGGCGTACTCGTAGAGCAGCGCTTTGAGTCTCCTCCCGTCCA
AAAACACGAATCGCTTCTCTCGCTCGCCGGCTCTCTTTTCTTCCTCTTCA
CGTCAGAACTAAGCACGTTTTCTGTGCCCCTTCCTATACGCTGCACGTAC
TCTACGTGCTCCCCACCCCACACCCCGAAGAGAGGCTTCTGTTTTTAATC
CTGCTGTGTGTTTTTTATTATCTCCCTCCTCGAAGCAACGACCTACAAAC
AACACCCACTCTTTTGTGTCGTCAAATTAATCTTTGGTGTTTTTACCCCC
CTCCCCCCAAAAGAACCAAGCTTTCGTGGATGGGCAGACAGCCCCCAGGT
TTTTCGCGGCGTACTCGTAGAGCAGCGCTTTGAGTCTCCTCCCGTCCAAA
AACACGAATCGCTTCTCTCGCTCGCCGGCTCTCTTTTCTTCCTCTTCACG
TCAGAACTAAGCACGTTTTCTGTGCCCCTTCCTATACGCTGCACGTACTC
TACGTGCTCCCCACCCCACACCCCGAAGAGAGGCTTCTGTTTTTAA
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