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Homology
BLAST of mRNA_L-elsbetiae_contig19348.5730.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI) HSP 1 Score: 137 bits (346), Expect = 9.800e-36 Identity = 73/95 (76.84%), Postives = 82/95 (86.32%), Query Frame = 2
Query: 2 AGRLFAPRLEAGRAVAVRPSGEACQMAAQVSSQGSYVVAGGTGGIGLDLALRFAKAGAGGLVLLSRRGKGFLEGLEADSTRARAWESLSAITTTK 286
AG+LFAPRLEAGR V V PSG+ C ++ +S +GSYVV GGTGGIGLDLALRFA+AGAGGLVLLSRRGKGFLEGL+ADS R RAW +LSAI TTK
Sbjct: 2206 AGKLFAPRLEAGRTVEVLPSGDRCPLSRHLSPRGSYVVTGGTGGIGLDLALRFARAGAGGLVLLSRRGKGFLEGLKADSPRGRAWSALSAIHTTK 2300
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 289 |
| Cds size | 288 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815802.573115-CDS-L-elsbetiae_contig19348:710..749 | 1622815802.573115-CDS-L-elsbetiae_contig19348:710..749 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 711..749 + |
| 1691683112.3318794-CDS-L-elsbetiae_contig19348:710..749 | 1691683112.3318794-CDS-L-elsbetiae_contig19348:710..749 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 711..749 + |
| 1622815802.5826046-CDS-L-elsbetiae_contig19348:1577..1736 | 1622815802.5826046-CDS-L-elsbetiae_contig19348:1577..1736 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 1578..1736 + |
| 1691683112.349364-CDS-L-elsbetiae_contig19348:1577..1736 | 1691683112.349364-CDS-L-elsbetiae_contig19348:1577..1736 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 1578..1736 + |
| 1622815802.592321-CDS-L-elsbetiae_contig19348:2402..2492 | 1622815802.592321-CDS-L-elsbetiae_contig19348:2402..2492 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 2403..2492 + |
| 1691683112.3607256-CDS-L-elsbetiae_contig19348:2402..2492 | 1691683112.3607256-CDS-L-elsbetiae_contig19348:2402..2492 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig19348 2403..2492 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19348.5730.1 >prot_L-elsbetiae_contig19348.5730.1 ID=prot_L-elsbetiae_contig19348.5730.1|Name=mRNA_L-elsbetiae_contig19348.5730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
SRQAFRPTAGGRAGRGCAALRGGVPDGRTGFLSGQLRRRRRDRRHRPRPG
AAVRQGWGWGARAAEQARQGFPGGAGGRLDQGKSVGVSLRHHHHQG back to topmRNA from alignment at L-elsbetiae_contig19348:711..2492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig19348.5730.1 ID=mRNA_L-elsbetiae_contig19348.5730.1|Name=mRNA_L-elsbetiae_contig19348.5730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig19348:711..2492+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCGGCAGGCTTTTCGCCCCACGGCTGGAGGCAGGGCGGTGAGAGAAGT
CTGTTTCTGGTGTGGAGCGAAGCGCGCACGACGTACTGTGCTGTGCTGTG
CTGTGTTGTATGTACCCCGCCTGCGTAGAGAGGCAGGCGGCGCAGGCGCG
TTTTGTTTGTCTGCCGTGCTTCTACTCAAGCCTCGGTATGGGTTGGCGTG
TTGCTAATGTAGCCGTTCCTTACGGTGGTGTTTGAGGGCGGGGGTTGTGC
CGTTGTGGGCTCTTCATGGAGGGGACCTGTTGGTTCGGATCATGCGCTCA
AATGAAGAAAAACGAGGTTCGTCTTGATCGTGACAACGGCAAATAAGCTA
CCGTATCAAGGGCTGGCGAATGGGTGTCTGCGATGTGTTGTAAGCGTGCC
TGCTGGAAGACGCTCGATTTACGCATTTACGCTTCGAGAAAGGGGGGGGG
GTCTCTGCTCGGTGTTTCTTTCGTTCCCCCATATTTTGGATGACGTCACG
GCTGTCGTGTCAGCCTTGTGATGCAAACTCGGCGTAGTGTGGCGTGGCGC
CGCGCAGCGCAGCGCGGTGTGTTGCTGTGCTACTGTGCTGTGCTGTGCTA
AATATACGGGAAATAACCTCAGAGGCCTTTCAGAATACAAACGTTGGCTG
TTGCGGGTTTCATCACCAACCAAGGCTCTGGTGTTGTTCGTGCTTTTTTA
GCACATACACATCCATGTAGTGTACATTTTTTCTGTCGTGGTCAAAACAT
GTTCGTGTCTCGTGTGTACGCACCTAAATATGCATGCATGCACGTCGACG
CGTCCATTTTCTCCTTGAACACCGCTCTCGTGTGCCCCCCCCCCCCTATC
CTCTTCCATGCCGCCAGGGCCGTGGCTGTGCGGCCCTCCGGGGAGGCGTG
CCAGATGGCCGCACAGGTTTCCTCTCAGGGCAGCTACGTCGTCGCCGGAG
GGACCGGCGGCATCGGCCTCGACCTGGCGCTGCGGTTCGCCAAGGCTGGG
GCTGGGGGGCTCGTGCTGCTGAGCAGGTGCGGGGCCGGTTTAGTGGCGAC
TTGCGACTAAAATCGCGGCCTATCACCCCACCCTCTCCTAACAAAAAACA
CCAGTCATACTGCTCAGAGCAGGCAGCACGAAACATCAACACACACAGCA
AGGGAGGGGCGCTACTACTCCGCTTCGTGAACAGACTGGTTGTCTCGGTT
GTTGCGTCCTTCTCGCTTTCTCTTCTCTTCGTGGCAACAGCAGTGATTGG
CTGGTCCGTTAACTTCGTGTGCATGCTATGCACCTGGGTAGGTGTTTTTT
CCCAGCGAGTGTCTGCAAATGCCAGGTGGTCTACGTCCAGTCTGCGAAAC
AATCGTTGCAGGGGGACTGTTGTAGGCATACTGAACCTCCTGCACCATCC
AAGCTACTGCTGTACTCGCACGAAATCCGTAGTCCATATGCCTTTTTTCA
TGTCGTTTTGCTGTTATTTCTAAGGTGTCTCGACGCAAATGCACGCAAAC
CCAACACCCGAAAACACACGTGGCGCGGCGGCGGCGCAGTGGCCGGGGGC
CTCTTGTCCGAGAGTCCCGGTGGATCTGAAACTGTCGTTAGATTTTCGCC
CGCTTAGACTGACGTCTGTTGATTGGTTGGTTACCTTGAGCCGGGCGGCA
CGGTCCGGTCGATTAAAATAGTTATGCTCCACGCACGCACAGGCGAGGCA
AGGGTTTCCTGGAGGGGCTGGAGGCCGACTCGACCAGGGCAAGAGCGTGG
GAGTCTCTCTCCGCCATCACCACCACCAAGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig19348:711..2492+ >mRNA_L-elsbetiae_contig19348.5730.1 ID=mRNA_L-elsbetiae_contig19348.5730.1|Name=mRNA_L-elsbetiae_contig19348.5730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig19348:711..2492+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCGGCAGGCTTTTCGCCCCACGGCTGGAGGCAGGGCGAGCCGGCAGGC
TTTTCGCCCCACGGCTGGAGGCAGGGCGGGCCGTGGCTGTGCGGCCCTCC
GGGGAGGCGTGCCAGATGGCCGCACAGGTTTCCTCTCAGGGCAGCTACGT
CGTCGCCGGAGGGACCGGCGGCATCGGCCTCGACCTGGCGCTGCGGTTCG
CCAAGGCTGGGGCTGGGGGGCTCGTGCTGCTGAGCAGGGCCGTGGCTGTG
CGGCCCTCCGGGGAGGCGTGCCAGATGGCCGCACAGGTTTCCTCTCAGGG
CAGCTACGTCGTCGCCGGAGGGACCGGCGGCATCGGCCTCGACCTGGCGC
TGCGGTTCGCCAAGGCTGGGGCTGGGGGGCTCGTGCTGCTGAGCAGGCGA
GGCAAGGGTTTCCTGGAGGGGCTGGAGGCCGACTCGACCAGGGCAAGAGC
GTGGGAGTCTCTCTCCGCCATCACCACCACCAAGGTGCGAGGCAAGGGTT
TCCTGGAGGGGCTGGAGGCCGACTCGACCAGGGCAAGAGCGTGGGAGTCT
CTCTCCGCCATCACCACCACCAAGGT back to top
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