mRNA_L-elsbetiae_contig193.5710.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig193.5710.1
Unique NamemRNA_L-elsbetiae_contig193.5710.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: D7FK08_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK08_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.000e-46
Identity = 111/222 (50.00%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    1 SFASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCPGGEIEVPGRDRRYSKAQRGILHVAGSRGEEKQQRTAVLR---------GXXXXXXEEASGAGAGA-----NGAKRKHTPIRSSISGPGTKYDTESTTSNHRQFSLPGETEGRGDTGDYKIASSPSTLILPPPMSGS 624
            SFASD+WALG++LYQM+VGK+PFFGR+YRALMASIK+E LTFPS+CQIEPYLVNLLHRMLDKNP TR++LEE MNHEWVT+EGVCP  +IE  G+    S  +R   HVAG R +   QR AV           G      + A G G  A      GA   +   RSS++   +K    +  ++H +          GD GD K +S P  L  PPP S S
Sbjct: 1255 SFASDVWALGISLYQMVVGKLPFFGRTYRALMASIKMEGLTFPSDCQIEPYLVNLLHRMLDKNPNTRLSLEEAMNHEWVTREGVCPP-QIEE-GQPGVPSMVERAEPHVAGLRSKGTWQRRAVHLTMHHPADGGGGDGIVRDIAVGEGGKAVGRATGGAGESNMRARSSVNVSTSKRHVPTLNNDHARRI--------GDRGDNKTSSVPLFLDSPPPSSKS 1466          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A6H5KED2_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED2_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.490e-44
Identity = 108/228 (47.37%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 SFASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCPGGEIEVPGRDRRYSKAQRGILHVAGSRGEEKQQRTAV----------------LRGXXXXXXEEASGAGAGANGAKRKHTPIRSSISGPGTKYDTESTTSNHRQFSLPGETEGRGDTGDYKIASS-PSTLILPPPMSGSRSY 633
            SFASD+WALG++LYQM+VGK+PFFGR+YRALMASIK+E L FPS+CQIEPYLVNLLHRMLDKNP TR++LE  MNHEWVT+EGVCP    E P      S  +R   HVAG R  + +QR AV                +R        +A G   G  GA   +   RSS++   +K    +  ++H +          GD  D K +SS PS L  PPP S +  Y
Sbjct: 1382 SFASDVWALGISLYQMVVGKLPFFGRTYRALMASIKMEGLAFPSDCQIEPYLVNLLHRMLDKNPNTRLSLEGAMNHEWVTREGVCPPQIEEGP--PGVPSMVERAEPHVAGLRSRDTRQRRAVHPTMYHPAEGGGGDGIVRNIAVGEGRKAIGRATG--GAGESNMRARSSVNVLTSKRHVPTLNNDHARRI--------GDRRDNKTSSSLPSFLESPPPSSKANRY 1597          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A7S1TQ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ32_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.350e-17
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP 258
            ASD+WALGVTL+  I G  P+ GR+   L   +   ELTFP E    P+L NLL RMLDKNP++RI +E    HEW+   G  P
Sbjct:   24 ASDIWALGVTLFYWIFGAFPWSGRNELLLSQKVAKVELTFPDEPAATPHLRNLLRRMLDKNPRSRIAVEGVAQHEWLIAGGADP 107          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A835YIE0_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIE0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.480e-16
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEG----VCPGGEIEVP 279
            ASD+WALGVTLYQM+ GK P++    + L  +I   EL+ P    ++P+L +LL  ML K+P  RITL E M HEWVT+EG       G + +VP
Sbjct: 1049 ASDVWALGVTLYQMVAGKTPWWAAGQQNLEKAIMHTELSLPESPALDPHLKHLLRSMLIKDPAHRITLVEAMQHEWVTREGSEMPFEAGADFDVP 1143          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A2H1WVJ6_SPOFR (SFRICE_027193 (Fragment) n=2 Tax=Spodoptera TaxID=7106 RepID=A0A2H1WVJ6_SPOFR)

HSP 1 Score: 86.7 bits (213), Expect = 4.180e-16
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP 258
            A+D+W+LGVTLY M+ GK+P+ G S   L   +  E LT+P   Q    L +LL RMLDK+P TR TL+E  +HEW+T  G  P
Sbjct:  173 AADIWSLGVTLYAMVTGKVPWVGSSAVELQRKVLAEPLTYPPNFQPSKQLRHLLSRMLDKDPATRATLQEVKDHEWITDGGKDP 256          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: UPI001301B62A (calcium/calmodulin-dependent protein kinase kinase 1 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=UPI001301B62A)

HSP 1 Score: 87.4 bits (215), Expect = 4.520e-16
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP 258
            A D+WA G+TLY  + GK PF   S  AL   IK EE+ FP +  I   L +L+ RMLDK+PQTRI + E   H WVTK G CP
Sbjct:  821 ALDVWATGITLYCFVYGKCPFIDDSILALHQKIKHEEVGFPEQPLISESLKDLILRMLDKDPQTRIVIPEIKVHPWVTKNGACP 904          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: UPI002007876A (Pkinase-domain-containing protein n=2 Tax=Annulohypoxylon TaxID=326606 RepID=UPI002007876A)

HSP 1 Score: 86.7 bits (213), Expect = 7.700e-16
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP--------GGEIEVP 279
            A+D+W++GV+LY +  GK+PF   +   ++ +I+ E+L  PSE + +P  VNL+ R+LDKNP+TR+TL E  NH WVTK G  P          E+E+P
Sbjct:  337 AADVWSMGVSLYCLKYGKLPFKRDNVLDMLEAIRTEDLQIPSENE-DPNFVNLITRILDKNPETRLTLREIRNHPWVTKGGTDPLLSEEENCSDEVEMP 434          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A8D8KWL0_CULPI (Calcium/calmodulin-dependent protein kinase kinase 2 n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KWL0_CULPI)

HSP 1 Score: 85.5 bits (210), Expect = 1.360e-15
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP 258
            A+D+WALG TLY ++ G +PF   S   +   IK + L FP    I P L +L+  MLDK+PQTRITL +   H W+TK G+ P
Sbjct:  190 AADIWALGATLYSLVHGNVPFIATSVPGVYEKIKYDPLEFPPTSTISPELRDLIVSMLDKDPQTRITLPQIKQHNWITKHGLHP 273          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A813AYL5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AYL5_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 1.460e-15
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGV 252
            A D+WALG TLY ++VG+ PF   +   L   +K ++  FPS  Q +PYL ++L RM++K+P  RI+L + + H WVT EG 
Sbjct:  132 AVDIWALGATLYTIVVGRPPFLANNQMELAEEVKTKQPAFPSVVQADPYLRDVLERMIEKDPAKRISLADLITHAWVTDEGT 213          
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Match: A0A7D9IFU6_PARCT (Calcium calmodulin-dependent kinase kinase 1-like isoform X2 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IFU6_PARCT)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-15
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 ASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEPYLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCP 258
            A+D+WA+G+TLY  + GK+PF   +  +L   IK  EL FP +CQI P L +LL+RML K+P  RIT+ +   H+W+TK G  P
Sbjct:  364 ATDVWAMGITLYCFVFGKIPFNHNNRISLYELIKTSELEFPEDCQISPGLEDLLNRMLIKDPSNRITIPDMKVHKWLTKGGSEP 447          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig193.5710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK08_ECTSI2.000e-4650.00cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5KED2_9PHAE1.490e-4447.37cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A7S1TQ32_9STRA2.350e-1750.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YIE0_9STRA1.480e-1647.37cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A2H1WVJ6_SPOFR4.180e-1648.81SFRICE_027193 (Fragment) n=2 Tax=Spodoptera TaxID=... [more]
UPI001301B62A4.520e-1651.19calcium/calmodulin-dependent protein kinase kinase... [more]
UPI002007876A7.700e-1643.43Pkinase-domain-containing protein n=2 Tax=Annulohy... [more]
A0A8D8KWL0_CULPI1.360e-1546.43Calcium/calmodulin-dependent protein kinase kinase... [more]
A0A813AYL5_9DINO1.460e-1543.90Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7D9IFU6_PARCT1.620e-1547.62Calcium calmodulin-dependent kinase kinase 1-like ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig193contigL-elsbetiae_contig193:18170..19101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue4.9e-43
Seed eggNOG ortholog2880.D7FK08
KEGG koko:K07359
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsKOG0585@1,KOG0585@2759
EC2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size717
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815800.4297194-CDS-L-elsbetiae_contig193:18169..182491622815800.4297194-CDS-L-elsbetiae_contig193:18169..18249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 18170..18249 +
1691683110.8397453-CDS-L-elsbetiae_contig193:18169..182491691683110.8397453-CDS-L-elsbetiae_contig193:18169..18249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 18170..18249 +
1622815800.440754-CDS-L-elsbetiae_contig193:18466..191001622815800.440754-CDS-L-elsbetiae_contig193:18466..19100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 18467..19100 +
1691683110.8514957-CDS-L-elsbetiae_contig193:18466..191001691683110.8514957-CDS-L-elsbetiae_contig193:18466..19100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig193 18467..19100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig193.5710.1prot_L-elsbetiae_contig193.5710.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig193 18170..19100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig193.5710.1

>prot_L-elsbetiae_contig193.5710.1 ID=prot_L-elsbetiae_contig193.5710.1|Name=mRNA_L-elsbetiae_contig193.5710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
SFASDLWALGVTLYQMIVGKMPFFGRSYRALMASIKLEELTFPSECQIEP
YLVNLLHRMLDKNPQTRITLEETMNHEWVTKEGVCPGGEIEVPGRDRRYS
KAQRGILHVAGSRGEEKQQRTAVLRGGGAAGGEEASGAGAGANGAKRKHT
PIRSSISGPGTKYDTESTTSNHRQFSLPGETEGRGDTGDYKIASSPSTLI
LPPPMSGSRSYHSCSLSTLDAPATGEKEQQRNKSQQQQ
back to top

mRNA from alignment at L-elsbetiae_contig193:18170..19101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig193.5710.1 ID=mRNA_L-elsbetiae_contig193.5710.1|Name=mRNA_L-elsbetiae_contig193.5710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=932bp|location=Sequence derived from alignment at L-elsbetiae_contig193:18170..19101+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTTTGCCAGCGATCTTTGGGCTCTCGGGGTCACGCTCTACCAGATGAT CGTCGGCAAGATGCCGTTCTTCGGCCGATCGTGAGCATGAAGTCGGTTGT ACTTGGTGCTTTCGCAAACCGTTGGCTCCCTAAGAGCATATTAAGAATGC TCCATTTCTGATACGCGACGCATCCACGCTCACCTCCCGTTGATCCCGCC CACCCTACGAGCGATTTCACCATGCCCGATATGAGAACCCGGGCAGAATT GCTTTGCAACATTATCAATTGTCCCCCGCCTGCCGTATCTCAACCAGGTA CCGCGCGCTAATGGCGTCAATCAAGCTGGAAGAGCTCACTTTTCCTTCGG AGTGCCAGATTGAGCCGTACCTTGTCAACCTCCTCCACAGAATGCTCGAT AAAAACCCACAGACCCGGATAACCCTGGAAGAGACGATGAACCACGAGTG GGTGACGAAGGAAGGTGTATGCCCCGGTGGGGAGATAGAGGTACCAGGGC GAGACCGGCGATACAGCAAAGCACAGAGGGGAATCTTGCACGTGGCGGGG TCGCGGGGCGAGGAAAAACAGCAGCGAACGGCGGTACTGCGAGGAGGAGG TGCAGCCGGGGGTGAGGAAGCCTCCGGCGCCGGCGCCGGCGCCAATGGTG CTAAGAGGAAGCACACGCCGATTCGGAGCAGCATTAGTGGTCCCGGCACA AAATACGACACTGAGAGCACCACAAGCAACCACCGGCAGTTCTCACTGCC AGGGGAGACGGAGGGCAGAGGAGATACGGGGGACTATAAGATCGCATCGT CACCGTCGACGCTGATATTGCCGCCACCTATGAGCGGCTCCAGGTCGTAT CATTCTTGCTCGCTTTCGACGCTGGACGCGCCCGCGACGGGAGAAAAGGA GCAGCAAAGAAATAAGTCCCAGCAGCAGCAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig193:18170..19101+

>mRNA_L-elsbetiae_contig193.5710.1 ID=mRNA_L-elsbetiae_contig193.5710.1|Name=mRNA_L-elsbetiae_contig193.5710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig193:18170..19101+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTTTGCCAGCGATCTTTGGGCTCTCGGGGTCACGCTCTACCAGATGAT
CGTCGGCAAGATGCCGTTCTTCGGCCGATCTCGTTTGCCAGCGATCTTTG
GGCTCTCGGGGTCACGCTCTACCAGATGATCGTCGGCAAGATGCCGTTCT
TCGGCCGATCGTACCGCGCGCTAATGGCGTCAATCAAGCTGGAAGAGCTC
ACTTTTCCTTCGGAGTGCCAGATTGAGCCGTACCTTGTCAACCTCCTCCA
CAGAATGCTCGATAAAAACCCACAGACCCGGATAACCCTGGAAGAGACGA
TGAACCACGAGTGGGTGACGAAGGAAGGTGTATGCCCCGGTGGGGAGATA
GAGGTACCAGGGCGAGACCGGCGATACAGCAAAGCACAGAGGGGAATCTT
GCACGTGGCGGGGTCGCGGGGCGAGGAAAAACAGCAGCGAACGGCGGTAC
TGCGAGGAGGAGGTGCAGCCGGGGGTGAGGAAGCCTCCGGCGCCGGCGCC
GGCGCCAATGGTGCTAAGAGGAAGCACACGCCGATTCGGAGCAGCATTAG
TGGTCCCGGCACAAAATACGACACTGAGAGCACCACAAGCAACCACCGGC
AGTTCTCACTGCCAGGGGAGACGGAGGGCAGAGGAGATACGGGGGACTAT
AAGATCGCATCGTCACCGTCGACGCTGATATTGCCGCCACCTATGAGCGG
CTCCAGGTCGTATCATTCTTGCTCGCTTTCGACGCTGGACGCGCCCGCGA
CGGGAGAAAAGGAGCAGCAAAGAAATAAGTCCCAGCAGCAGCAGGTACCG
CGCGCTAATGGCGTCAATCAAGCTGGAAGAGCTCACTTTTCCTTCGGAGT
GCCAGATTGAGCCGTACCTTGTCAACCTCCTCCACAGAATGCTCGATAAA
AACCCACAGACCCGGATAACCCTGGAAGAGACGATGAACCACGAGTGGGT
GACGAAGGAAGGTGTATGCCCCGGTGGGGAGATAGAGGTACCAGGGCGAG
ACCGGCGATACAGCAAAGCACAGAGGGGAATCTTGCACGTGGCGGGGTCG
CGGGGCGAGGAAAAACAGCAGCGAACGGCGGTACTGCGAGGAGGAGGTGC
AGCCGGGGGTGAGGAAGCCTCCGGCGCCGGCGCCGGCGCCAATGGTGCTA
AGAGGAAGCACACGCCGATTCGGAGCAGCATTAGTGGTCCCGGCACAAAA
TACGACACTGAGAGCACCACAAGCAACCACCGGCAGTTCTCACTGCCAGG
GGAGACGGAGGGCAGAGGAGATACGGGGGACTATAAGATCGCATCGTCAC
CGTCGACGCTGATATTGCCGCCACCTATGAGCGGCTCCAGGTCGTATCAT
TCTTGCTCGCTTTCGACGCTGGACGCGCCCGCGACGGGAGAAAAGGAGCA
GCAAAGAAATAAGTCCCAGCAGCAGCAG
back to top