mRNA_L-elsbetiae_contig19146.5652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19146.5652.1
Unique NamemRNA_L-elsbetiae_contig19146.5652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19146.5652.1 vs. uniprot
Match: D7FQP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP0_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 3.190e-96
Identity = 144/197 (73.10%), Postives = 165/197 (83.76%), Query Frame = 1 
Query:   10 PTKVPTEIKKGLAFFPGAVIVQTFSEGEREHIEPRLTFQRAYDSVDILSNGRPVEGGIDLDKAPVLAGVIDEMTGLVGVRPDCVHVTTREGGQIHTSHSDKMKFDVRGTVHLGADVLLGGQVDSTKSTGDFVLSSGGLLQPLQLRMRSGDAYIATAKVLHAPFLHGISPPDQASLSIVSTWSPGRGAFNLFRSKSRP 600
            PT VPT +K GLAF+ GAV V TF+EGER+HIE  L+FQRAYDSVDILS G+PV+GG+DL  APV+AG I  MT LVGVR DC H+TTRE  Q+HTSHSD+MKFDVRGTVHLGADVLL GQVD  +STGDF+LS G L QPL + MRSGDAYIAT++VL+AP  HGISPPDQASLS+V TWSPGRGAFN +RS+S P
Sbjct:   50 PTGVPTRVKNGLAFYRGAVSVPTFTEGERQHIESHLSFQRAYDSVDILSRGKPVDGGVDLALAPVVAGAIATMTDLVGVRSDCAHLTTREKEQLHTSHSDRMKFDVRGTVHLGADVLLHGQVDPARSTGDFILSGGDLPQPLIMPMRSGDAYIATSEVLYAPLFHGISPPDQASLSVVCTWSPGRGAFNPWRSQSHP 246
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BLAST of mRNA_L-elsbetiae_contig19146.5652.1 vs. uniprot
Match: A0A6H5KC74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC74_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.640e-88
Identity = 145/198 (73.23%), Postives = 158/198 (79.80%), Query Frame = 1 
Query:    7 TPTKVPTEIKKGLAFFPGAVIVQTFSEGEREHIEPRLTFQRAYDSVDILSNGRPVEGGIDLDKAPVLAGVIDEMTGLVGVRPDCVHVTTREGGQIHTSHSDKMKFDVRGTVHLGADVLLGGQVDSTKSTGDFVLSSGGLLQPLQLRMRSGDAYIATAKVLHAPFLHGISPPDQASLSIVSTWSPGRGAFNLFRSKSRP 600
            T T VPT++K GLAFF GAV VQTFSE ER HIE RLTFQRAYDSVDILSNG+PV+GGI L+KAPVLA +ID+MT LVGV PD VH+TTREGGQIH SHSDKM+FDVR TVHLG DVLL GQVD  KSTGDFVLS   L Q L L+MRSGD YIAT  VLHAP+L GI PP QASLS+VS W   R  F+ FR K RP
Sbjct:  251 TQTTVPTKVKNGLAFFRGAVSVQTFSEAERRHIESRLTFQRAYDSVDILSNGKPVDGGIGLEKAPVLACLIDKMTDLVGVPPDGVHMTTREGGQIHMSHSDKMQFDVRSTVHLGKDVLLDGQVDPAKSTGDFVLSGRDLSQSLLLQMRSGDPYIATDNVLHAPYLQGIRPPGQASLSLVSAW---RRVFHPFRPKFRP 445
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19146.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQP0_ECTSI3.190e-9673.10Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KC74_9PHAE1.640e-8873.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19146contigL-elsbetiae_contig19146:123..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001510.1
Exons1
Model size602
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.567336-CDS-L-elsbetiae_contig19146:122..7221622815795.567336-CDS-L-elsbetiae_contig19146:122..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19146 123..722 +
1691683107.9204998-CDS-L-elsbetiae_contig19146:122..7221691683107.9204998-CDS-L-elsbetiae_contig19146:122..722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19146 123..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19146.5652.1prot_L-elsbetiae_contig19146.5652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19146 123..722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19146.5652.1

>prot_L-elsbetiae_contig19146.5652.1 ID=prot_L-elsbetiae_contig19146.5652.1|Name=mRNA_L-elsbetiae_contig19146.5652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
DWTPTKVPTEIKKGLAFFPGAVIVQTFSEGEREHIEPRLTFQRAYDSVDI
LSNGRPVEGGIDLDKAPVLAGVIDEMTGLVGVRPDCVHVTTREGGQIHTS
HSDKMKFDVRGTVHLGADVLLGGQVDSTKSTGDFVLSSGGLLQPLQLRMR
SGDAYIATAKVLHAPFLHGISPPDQASLSIVSTWSPGRGAFNLFRSKSRP
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mRNA from alignment at L-elsbetiae_contig19146:123..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19146.5652.1 ID=mRNA_L-elsbetiae_contig19146.5652.1|Name=mRNA_L-elsbetiae_contig19146.5652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=601bp|location=Sequence derived from alignment at L-elsbetiae_contig19146:123..723+ (Laminarionema elsbetiae ELsaHSoW15)
GATTGGACACCAACAAAAGTGCCGACCGAGATCAAGAAGGGCCTGGCGTT
CTTCCCGGGTGCGGTGATCGTACAGACGTTCAGCGAAGGGGAGCGCGAAC
ACATCGAGCCCCGACTGACGTTCCAGCGAGCATATGACAGCGTTGACATC
CTCTCCAACGGCAGGCCCGTCGAGGGAGGGATAGATCTGGACAAGGCGCC
TGTCCTAGCTGGCGTGATCGACGAGATGACCGGCCTGGTTGGCGTGCGGC
CTGACTGCGTGCACGTAACAACGCGGGAGGGCGGTCAAATCCACACATCG
CATTCGGACAAGATGAAGTTCGATGTGCGCGGCACCGTCCACCTTGGCGC
GGACGTCCTCCTTGGCGGGCAAGTAGACTCCACCAAGTCCACAGGGGACT
TCGTCCTCAGCAGCGGCGGCCTGTTGCAGCCCCTTCAACTTCGGATGCGG
AGTGGGGACGCGTACATCGCCACCGCCAAGGTCCTTCATGCCCCCTTCTT
GCACGGAATCAGCCCCCCGGACCAAGCAAGCCTGTCGATTGTTTCCACGT
GGTCTCCGGGACGTGGCGCCTTCAACCTCTTCCGGAGCAAGTCCCGCCCC
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19146:123..723+

>mRNA_L-elsbetiae_contig19146.5652.1 ID=mRNA_L-elsbetiae_contig19146.5652.1|Name=mRNA_L-elsbetiae_contig19146.5652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig19146:123..723+ (Laminarionema elsbetiae ELsaHSoW15)
GATTGGACACCAACAAAAGTGCCGACCGAGATCAAGAAGGGCCTGGCGTT
CTTCCCGGGTGCGGTGATCGTACAGACGTTCAGCGAAGGGGAGCGCGAAC
ACATCGAGCCCCGACTGACGTTCCAGCGAGCATATGACAGCGTTGACATC
CTCTCCAACGGCAGGCCCGTCGAGGGAGGGATAGATCTGGACAAGGCGCC
TGTCCTAGCTGGCGTGATCGACGAGATGACCGGCCTGGTTGGCGTGCGGC
CTGACTGCGTGCACGTAACAACGCGGGAGGGCGGTCAAATCCACACATCG
CATTCGGACAAGATGAAGTTCGATGTGCGCGGCACCGTCCACCTTGGCGC
GGACGTCCTCCTTGGCGGGCAAGTAGACTCCACCAAGTCCACAGGGGACT
TCGTCCTCAGCAGCGGCGGCCTGTTGCAGCCCCTTCAACTTCGGATGCGG
AGTGGGGACGCGTACATCGCCACCGCCAAGGTCCTTCATGCCCCCTTCTT
GCACGGAATCAGCCCCCCGGACCAAGCAAGCCTGTCGATTGTTTCCACGT
GGTCTCCGGGACGTGGCGCCTTCAACCTCTTCCGGAGCAAGTCCCGCCCC
GATTGGACACCAACAAAAGTGCCGACCGAGATCAAGAAGGGCCTGGCGTT
CTTCCCGGGTGCGGTGATCGTACAGACGTTCAGCGAAGGGGAGCGCGAAC
ACATCGAGCCCCGACTGACGTTCCAGCGAGCATATGACAGCGTTGACATC
CTCTCCAACGGCAGGCCCGTCGAGGGAGGGATAGATCTGGACAAGGCGCC
TGTCCTAGCTGGCGTGATCGACGAGATGACCGGCCTGGTTGGCGTGCGGC
CTGACTGCGTGCACGTAACAACGCGGGAGGGCGGTCAAATCCACACATCG
CATTCGGACAAGATGAAGTTCGATGTGCGCGGCACCGTCCACCTTGGCGC
GGACGTCCTCCTTGGCGGGCAAGTAGACTCCACCAAGTCCACAGGGGACT
TCGTCCTCAGCAGCGGCGGCCTGTTGCAGCCCCTTCAACTTCGGATGCGG
AGTGGGGACGCGTACATCGCCACCGCCAAGGTCCTTCATGCCCCCTTCTT
GCACGGAATCAGCCCCCCGGACCAAGCAAGCCTGTCGATTGTTTCCACGT
GGTCTCCGGGACGTGGCGCCTTCAACCTCTTCCGGAGCAAGTCCCGCCCC
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