mRNA_L-elsbetiae_contig19126.5646.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19126.5646.1
Unique NamemRNA_L-elsbetiae_contig19126.5646.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19126.5646.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.030e-16
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:    2 ALAIQSIYDEADQTPGVSVKKIKKKCQKWLNKRAGEEKKQQQAS-QATQAIPVPRGXXXXXXXXXXXXXXXLATQRPTHFEIFCPNV 259
            ALA+Q+I+DEADQTPG  +KKIKKKC+KWLNK+ GE +++QQ   QA Q  P P                 +A QRPT +E+FCPNV
Sbjct:  508 ALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAAQRPTEYEMFCPNV 594
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BLAST of mRNA_L-elsbetiae_contig19126.5646.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.260e-14
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 2 
Query:    5 LAIQSIYDEADQTPGVSVKKIKKKCQKWLNKRAGEEKKQQQASQATQAIPVP-RGXXXXXXXXXXXXXXXLATQRPTHFEIFCPN 256
            LA+QSIYDEADQTPG S+KKIKKKCQ++LNK+AGE++K QQASQ     P P RG XXXXXXXXX        QRPT  ++FCPN
Sbjct:  699 LAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGEDQKLQQASQ-----PAPVRGAXXXXXXXXX-----XXAQRPTQHDMFCPN 773
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BLAST of mRNA_L-elsbetiae_contig19126.5646.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.270e-14
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:    2 ALAIQSIYDEADQTPGVSVKKIKKKCQKWLNKRAGEEKKQQQAS-QATQAIPVP----RGXXXXXXXXXXXXXXXLATQRPTHFEIFCPNV 259
            ALA+Q+I+DEADQTPG  +KK+KKKC+KWLNK+ GE +++QQ   QA Q  P P    R                 A QRPT +E+FCPNV
Sbjct:  650 ALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNV 740
[Close]
BLAST of mRNA_L-elsbetiae_contig19126.5646.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.510e-9
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    5 LAIQSIYDEADQTPGVSVKKIKKKCQKWLNKRAGE 109
            LA+QSIYDEADQTPG S+KKIKKKC+KWLNK+ GE
Sbjct: 1101 LAVQSIYDEADQTPGASIKKIKKKCKKWLNKKEGE 1135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19126.5646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX18_ECTSI4.030e-1651.72KH domain containing protein n=1 Tax=Ectocarpus si... [more]
D7FX21_ECTSI2.260e-1465.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8V2_9PHAE2.270e-1449.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGK6_9PHAE1.510e-982.86WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19126contigL-elsbetiae_contig19126:1057..2402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19126.5646.1prot_L-elsbetiae_contig19126.5646.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19126 1229..2402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.2110405-UTR-L-elsbetiae_contig19126:1056..12281622815795.2110405-UTR-L-elsbetiae_contig19126:1056..1228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19126 1057..1228 -
1691683107.7274823-UTR-L-elsbetiae_contig19126:1056..12281691683107.7274823-UTR-L-elsbetiae_contig19126:1056..1228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19126 1057..1228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.2213247-CDS-L-elsbetiae_contig19126:1228..14251622815795.2213247-CDS-L-elsbetiae_contig19126:1228..1425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19126 1229..1425 -
1691683107.7385988-CDS-L-elsbetiae_contig19126:1228..14251691683107.7385988-CDS-L-elsbetiae_contig19126:1228..1425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19126 1229..1425 -
1622815795.2333388-CDS-L-elsbetiae_contig19126:2293..24021622815795.2333388-CDS-L-elsbetiae_contig19126:2293..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19126 2294..2402 -
1691683107.749364-CDS-L-elsbetiae_contig19126:2293..24021691683107.749364-CDS-L-elsbetiae_contig19126:2293..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19126 2294..2402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19126.5646.1

>prot_L-elsbetiae_contig19126.5646.1 ID=prot_L-elsbetiae_contig19126.5646.1|Name=mRNA_L-elsbetiae_contig19126.5646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
CSRDPVDLRRGRPDPRSQREEDQEEVPEVAQQTGGGGEKAATSQPSHASH
PRTERRRGRRRGGGCGCGCSVGDTEAYSLRDLLPERESVKQTIPLRLPNP
I*
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mRNA from alignment at L-elsbetiae_contig19126:1057..2402-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19126.5646.1 ID=mRNA_L-elsbetiae_contig19126.5646.1|Name=mRNA_L-elsbetiae_contig19126.5646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1346bp|location=Sequence derived from alignment at L-elsbetiae_contig19126:1057..2402- (Laminarionema elsbetiae ELsaHSoW15)
TGCTCTCGCGATCCAGTCGATCTACGACGAGGCCGACCAGACCCCCGGAG
TCAGCGTGAAGAAGATCAAGAAGAAGTGCCAGAAGTGGCTCAACAAACGG
GCGGGGGAGGTGGGATTGGAGAGTGGCAAAGTCTGTTCGGCATACAGGGG
TTGGGCTCCCGGGCCGGAGCAGGCGGGGGCGGGGGTAGCGGGGGTACACA
GCGGGGGGGGGGGCTCTCGAAACGAAAACGGATCAGAATGATGGGCGGAT
GGGATGAATGAAGGTGTTCGGCGGTTAGTCGATCTCGGAGGGCGGTTCGT
TATTAAAGAGTTTATGGAACTGAAGGCGTAAATCGACACCTCGTCGCCCC
TGTGCTCTTCTTCCACCAACGTTTTGCGTTGAAGCATTTCCACTTCTTTC
GAGTACACTTGGGAAGATCCTACGAGCGACAGCGAAGCCACCAGCGTTCC
TTTGATTAAACTTTCCTCTTCCTTCGCTGATTAAACATTCCGCTACACAT
GTGTTTTATTGGTCATTTGTTTTGTTACTTGTTGTTTGTGTGTGTGTGCG
TGTGTTCGAGGAGTGTGTAAATGTACTCCCTTCCTTCTCACGTGCTACTA
TGCTACGAGATTGGGGATAACAAGTGAACACAAAGGTGTTTTCTGCACAT
TTGCCTTGTCGTGCCGACTCGTTTAATCTCACGCTCTCCTTTTGCGTTCC
TGTCGGCTACCTAGGCGGCCATGCACGGTGATCACGACCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCG
CGGAGGCACACACACAAAACCACACCCCCCCCCNNNNNNNNNNGACGTGG
TCCTTTCCGTTCTCTCCCTTTTTGTCTTCCCGCCGGGGCCCCGGGCGGCC
CGGCCGGGTGTTCACGCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCTC
CGCCGCCGCCGCCGCCGCCGTGTGCAGGAGAAAAAGCAGCAACAAGCCAG
CCAAGCCACGCAAGCCATCCCCGTACCGAGAGGCGCAGGGGCCGGCGGCG
CGGCGGCGGCTGCGGCTGCGGCTGCAGCGTTGGCGACACAGAGGCCTACT
CACTTCGAGATCTTCTGCCCGAACGTGAGTCCGTAAAACAAACCATCCCT
TTGCGTCTCCCTAACCCTATCTAGTACTTTTCCCGACTCCTTTATATACG
GCTTTACCCCGGCTCCTCTTGTTTCGGCTTTTCCCGACTGCTTTATATGT
ATGTATACGGAGTATGATGACTCAGCATCAACACCTGTACAAGCGAGCTA
CAGCAGTGCCGTAGGTGACGCAAGATACCGCACCCCCGGGACTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19126:1057..2402-

>mRNA_L-elsbetiae_contig19126.5646.1 ID=mRNA_L-elsbetiae_contig19126.5646.1|Name=mRNA_L-elsbetiae_contig19126.5646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig19126:1057..2402- (Laminarionema elsbetiae ELsaHSoW15)
TGCTCTCGCGATCCAGTCGATCTACGACGAGGCCGACCAGACCCCCGGAG
TCAGCGTGAAGAAGATCAAGAAGAAGTGCCAGAAGTGGCTCAACAAACGG
GCGGGGGAGTGCTCTCGCGATCCAGTCGATCTACGACGAGGCCGACCAGA
CCCCCGGAGTCAGCGTGAAGAAGATCAAGAAGAAGTGCCAGAAGTGGCTC
AACAAACGGGCGGGGGAGGAGAAAAAGCAGCAACAAGCCAGCCAAGCCAC
GCAAGCCATCCCCGTACCGAGAGGCGCAGGGGCCGGCGGCGCGGCGGCGG
CTGCGGCTGCGGCTGCAGCGTTGGCGACACAGAGGCCTACTCACTTCGAG
ATCTTCTGCCCGAACGTGAGTCCGTAAAACAAACCATCCCTTTGCGTCTC
CCTAACCCTATCTAGGAGAAAAAGCAGCAACAAGCCAGCCAAGCCACGCA
AGCCATCCCCGTACCGAGAGGCGCAGGGGCCGGCGGCGCGGCGGCGGCTG
CGGCTGCGGCTGCAGCGTTGGCGACACAGAGGCCTACTCACTTCGAGATC
TTCTGCCCGAACGTGAGTCCGTAAAACAAACCATCCCTTTGCGTCTCCCT
AACCCTATCTAG
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