mRNA_L-elsbetiae_contig1912.5642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1912.5642.1
Unique NamemRNA_L-elsbetiae_contig1912.5642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 4.970e-87
Identity = 198/393 (50.38%), Postives = 235/393 (59.80%), Query Frame = 3 
Query:  750 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSIST--ATLETHPTTPPTNKEREKGDT-----ARDEENAEERSQLVAQGPGQGDP--------------SRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS-----PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 1802
            QDSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH  SC M++S E++  V ++A+   +    AT  T    PP    R+KGD        DE NA +   ++A GP                    RTVTCMRC ESLPF LVPSHG KCKGKK  G  LGA  TA +P   SER +               +  R P+  + + S+S++            GLS   I  S      S L+S     P D G +P+  S R       PA   KAWH + R    + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE  RRQILEA+ SL+
Sbjct:  933 QDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTR-AGPPNETTRKKGDEHASHGETDEGNARQGG-VLAIGPXXXXXXXXXXXXXXXXXXADRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAGSPSGTSERWQGPPSGFHYPPPFGAAVDFRPPSLRSPVSSQSRSGVGGNPLRG---GLSTPPILSSAVGTHGSTLSSLSSSGPGDTGAVPKVSSGRSVVTPCSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDSLK 1319
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BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 8.200e-87
Identity = 191/395 (48.35%), Postives = 233/395 (58.99%), Query Frame = 3 
Query:  750 QDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQCGVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSI----STATLETHPTTPPTNKEREKGDTARDEENAEERSQLVAQGPGQ----------------------GDPSRTVTCMRCQESLPFLLVPSHGAKCKGKKESGFHLGA--TAAAPPVASERQE-------------QELSLRCPAKSTEIESKSKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTS--PRDLG-MPRPFSSRLGAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTSWLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTRRQILEALGSLR 1802
            +DSGVVTAQCEFCLRRYLK+AMSTHLQ CELRLVRCPFQCGVKVLVRNL+KH  SC M++S E+   V+++A++  +    +TA     P    T K+ ++  +  DE NA++   L   GPG                        D  RTVTCMRC ESLPF LVPSHG KCKGKK  G  LGA  TAA+P   SER                 +  R P+  + + S+S++                          + SPL+S  P D G +P+  S R       PA   KAWH + R    + PG +VP SP R K+VR WGTRQVTSWLR+IMRPPRAD+IS+FHD GVDGT LL +TDRYLLHPTEG+GITDE  RRQILEA+  L+
Sbjct:  734 KDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATATRVRNLDATAGTRVEPHNETTRKKGDELASHGDEANAQQGGALAI-GPGPEPXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEG-ELGARATAASPSGTSERSRGPPSGFQDPPPFGAAVGFRPPSLRSPVSSQSRSGVGGTPXXXXXXXXXXXXXXXXTHGSTLSPLSSSGPGDTGAVPKISSGRSVVTPHSPAVSPKAWHASSRIGTVLTPGVRVPPSPPRLKDVRAWGTRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDFLK 1126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1912.5642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2E5_9PHAE4.970e-8750.38SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSX8_ECTSI8.200e-8748.35SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1912contigL-elsbetiae_contig1912:2885..5904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSterile alpha motif/pointed domain
Ec32 orthologEc-26_001810.1
Exons4
Model size1808
Cds size1089
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1912.5642.1prot_L-elsbetiae_contig1912.5642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1912 2885..4471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.0433173-CDS-L-elsbetiae_contig1912:2884..29751622815795.0433173-CDS-L-elsbetiae_contig1912:2884..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 2885..2975 -
1691683107.6287355-CDS-L-elsbetiae_contig1912:2884..29751691683107.6287355-CDS-L-elsbetiae_contig1912:2884..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 2885..2975 -
1622815795.054187-CDS-L-elsbetiae_contig1912:3220..41071622815795.054187-CDS-L-elsbetiae_contig1912:3220..4107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 3221..4107 -
1691683107.6390626-CDS-L-elsbetiae_contig1912:3220..41071691683107.6390626-CDS-L-elsbetiae_contig1912:3220..4107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 3221..4107 -
1622815795.067816-CDS-L-elsbetiae_contig1912:4360..44711622815795.067816-CDS-L-elsbetiae_contig1912:4360..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 4361..4471 -
1691683107.6472163-CDS-L-elsbetiae_contig1912:4360..44711691683107.6472163-CDS-L-elsbetiae_contig1912:4360..4471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1912 4361..4471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.0813665-UTR-L-elsbetiae_contig1912:4471..49081622815795.0813665-UTR-L-elsbetiae_contig1912:4471..4908Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1912 4472..4908 -
1691683107.6555462-UTR-L-elsbetiae_contig1912:4471..49081691683107.6555462-UTR-L-elsbetiae_contig1912:4471..4908Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1912 4472..4908 -
1622815795.0921862-UTR-L-elsbetiae_contig1912:5622..59041622815795.0921862-UTR-L-elsbetiae_contig1912:5622..5904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1912 5623..5904 -
1691683107.66375-UTR-L-elsbetiae_contig1912:5622..59041691683107.66375-UTR-L-elsbetiae_contig1912:5622..5904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1912 5623..5904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1912.5642.1

>prot_L-elsbetiae_contig1912.5642.1 ID=prot_L-elsbetiae_contig1912.5642.1|Name=mRNA_L-elsbetiae_contig1912.5642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
MRHGFLWWYMQDSGVVTAQCEFCLRRYLKAAMSTHLQGCELRLVRCPFQC
GVKVLVRNLDKHKNSCPMRQSGENKEDVESAASSGSISTATLETHPTTPP
TNKEREKGDTARDEENAEERSQLVAQGPGQGDPSRTVTCMRCQESLPFLL
VPSHGAKCKGKKESGFHLGATAAAPPVASERQEQELSLRCPAKSTEIESK
SKTLTAAAEKSAPSEGLSQSSISGSDWRKSPSPLTSPRDLGMPRPFSSRL
GAPLSPPAAGTKAWHGACRTEEGVPPGAKVPLSPARSKNVRTWGTRQVTS
WLRDIMRPPRADVISRFHDGGVDGTTLLGITDRYLLHPTEGMGITDESTR
RQILEALGSLRE*
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mRNA from alignment at L-elsbetiae_contig1912:2885..5904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1912.5642.1 ID=mRNA_L-elsbetiae_contig1912.5642.1|Name=mRNA_L-elsbetiae_contig1912.5642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3020bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:2885..5904- (Laminarionema elsbetiae ELsaHSoW15)
GCTCGCGTTCAACCAACCACCCAGGGCCCGACCCCAAGTGGTGATACGAA
ACCTTCGACACTGGAGCCTGTTAGGAATTATTTGAGTTCAGGAACTCACG
GCGATGCTACTGATACTGAGGAGGCAGCGGGCAATGTCGTCTTGTCCAAT
CGGGCGGCGGCACCGAGCAAAGATCTGGAGACGGTCGAGCGAGAGTCAGA
CAGCAGCTTTTCGGTGGAAGACGAACGGGCAGGCGAGACACCGGTTGAGA
CAGACCGTGGCAGGGTTGAGCGAGAATTGCAAGTGAGCTACCAAGACACC
CAATTGAAGAACTAGTGGCGAAGAGTAGGACATGCTGCACGTGCAGAGAA
ATTGAGGCTGCCTACCTACTCATGGGGGTGGTTATTTCGCGAATTTGCAG
TACATAGAAAGCGAAAAGCTCTTAAGTGCAAAAACTTCGACTTCAACGTT
GACGAGGGAAAAGGGACGGCTGAACCCTTCTCGCGATGCAAATCAAGGCA
AGCATCGCAAGAGGAAGATGGGGCAGTAAAGAAAAATATAAAGAAGACAA
AAACAGTGTGTCTCCCCCCTCTTGTGGGACCCCGGCGGATACGTCTAGTT
GCACAGAAAACGTACACCGAAACGTGTAGTGCAATACACCGAAACGTGCG
GCACACCTGAACACGGTGGACAGCCGCCAGAGCAAATGGAATGAAACCAC
ACAGCACACACAAGTTCATAATATATGTACCTAGAGCACCAGCACCTCTG
CTTTGTCTGTTACAGCTGTCTGAGTCGATGGGCTCTACCTTTGACAACGC
ATTCGCGTCTGCGTGGCTAGCTGGGCATGTTTCGATTGTGGCCTTCGTGG
TACGAATAATATTGTTCCAAATCAATCCGACACGTGTTTGGGTTCTAGTG
TGCGACTATATTTCCGCTGCGCATGTCTCGCCATTGTGCAGTCTTCTTTT
TTTCGACGCAATGTGTTCCGTCTTTGCGCCCACTTATTCGTTACAGCAGC
CAGGAGGCGCACTCTCTCTATCGGCAACAACTCTAAAAACATCGTCCTAC
GACAGCAGCGTTGGCAAGAGCAACGTTGCCGGTGGGAAACGCACCACCCA
CGAAGAGCGAGCAGCAGTTAACGGGGAGCAAAGGACTCCACCGCCGCCCC
CCCCGCCACCGCGAAGTGCCTCTTGGAATACCAGAAGGAAATCGTTGGAG
GGGTGCAATACAGGTCCTGCACCGGTCAGCTTTCGAGAGAGGTCAGCCTC
GAAGGCAAGTCGGCATACTTCGAAGAGTACATGTTTTTGCCTAACCCCTA
CATTTAATGGCCGATCTCGATTGCTCTTCCCGTTCACAAGAAACCGGATG
CTATTTTAAACCATGGGGATGCCACATCTGATGATCGCGGCACTTCCAAA
CCCCATGCACACACCCAAGTGCCAACATTCCGGATGCGCCACGGTTTTCT
TTGGTGGTATATGCAGGATTCTGGCGTGGTCACGGCGCAATGCGAGTTTT
GCTTGCGGCGGTACCTCAAGGCCGCCATGAGCACCCATTTACAGGTGAGC
AGTACGGGTTTTTCGATCAGTCTTCGTTGTCTGCAGATGTACACAGCAGT
CTTTGTGCAAGATCGATGACACAAATCAAACATCCACGAAACAGCTGCTG
TGCAAGAATTGTAGACTTCACTTCATATCAAAATAGCCCTGTCAGGAACG
GCCTGCTGTCAACATTATTTGTGTCCCTGTTGTAACAAACGTTGCACCAT
GCGATACTACCCTTAAAGTAAGAGTCTCCGGTACCTCCTGGCCGCAGGGT
TGTGAGCTTCGGCTGGTTCGGTGCCCCTTCCAGTGCGGCGTCAAGGTGTT
GGTGCGGAACCTCGACAAGCACAAGAACTCTTGTCCGATGAGACAGTCTG
GTGAAAACAAAGAAGACGTTGAATCCGCGGCATCAAGTGGGTCCATCTCC
ACCGCCACCCTGGAAACCCACCCAACAACACCTCCAACCAACAAGGAGCG
TGAAAAGGGCGACACGGCTCGAGACGAAGAAAACGCGGAGGAGAGAAGTC
AGTTGGTTGCACAGGGGCCAGGACAGGGGGATCCGAGTCGCACGGTGACT
TGCATGCGATGCCAGGAAAGCCTGCCATTTCTCCTGGTGCCTTCTCACGG
CGCCAAATGTAAGGGCAAGAAAGAGAGCGGGTTTCACCTTGGTGCGACAG
CGGCAGCACCACCCGTTGCCTCCGAGAGGCAGGAACAGGAGCTATCCTTG
AGATGCCCCGCCAAGAGTACTGAGATTGAGAGTAAGTCGAAAACCCTCAC
GGCGGCTGCAGAAAAGAGTGCGCCCAGCGAAGGACTGTCTCAGTCGTCAA
TTTCAGGGAGCGATTGGAGGAAAAGCCCTTCTCCGCTCACGTCGCCGAGG
GACCTCGGTATGCCAAGGCCATTTTCTTCTCGGTTGGGGGCACCTCTTTC
TCCGCCCGCCGCCGGTACTAAGGCTTGGCACGGGGCGTGCCGAACAGAGG
AGGGGGTGCCTCCGGGTGCAAAGGTTCCTCTTTCGCCCGCTAGATCGAAA
AACGTCCGGACTTGGGGGACGAGGCAAGTGACTTCCTGGCTGAGAGACAT
CATGCGACCACCGAGGGCTGACGTGATCTCGAGGTTCCATGATGGTGGTG
TCGACGGCACCACGCTGCTCGGGATAACAGACAGGTACCGGTGGAGAGGT
GTCTGAGCGTGCCTAAGTGAGCTCGATACGGAATTTTGAGAGGTTGTGCG
AAGATCAAGATTGCTTCATAGGGCACCTCTATGTTGCGGAATCCCACAAT
ATGACACGCATAATAAACAATCTTTCAAAGACAGATTGAATGAAGAAGGC
TTTCCAACAGTCTTGTTTTATCTTTTTTTCTGGTCGTCATATCAATTGCT
GCCTTTCGACCACATTTATTCTGCGACAGGTATCTCCTGCATCCGACAGA
GGGCATGGGAATCACCGACGAAAGCACCCGCCGGCAAATTCTTGAGGCGC
TGGGCTCTCTAAGGGAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1912:2885..5904-

>mRNA_L-elsbetiae_contig1912.5642.1 ID=mRNA_L-elsbetiae_contig1912.5642.1|Name=mRNA_L-elsbetiae_contig1912.5642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig1912:2885..5904- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCACGGTTTTCTTTGGTGGTATATGCAGGATTCTGGCGTGGTCAC
GGCGCAATGCGAGTTTTGCTTGCGGCGGTACCTCAAGGCCGCCATGAGCA
CCCATTTACAGATGCGCCACGGTTTTCTTTGGTGGTATATGCAGGATTCT
GGCGTGGTCACGGCGCAATGCGAGTTTTGCTTGCGGCGGTACCTCAAGGC
CGCCATGAGCACCCATTTACAGGGTTGTGAGCTTCGGCTGGTTCGGTGCC
CCTTCCAGTGCGGCGTCAAGGTGTTGGTGCGGAACCTCGACAAGCACAAG
AACTCTTGTCCGATGAGACAGTCTGGTGAAAACAAAGAAGACGTTGAATC
CGCGGCATCAAGTGGGTCCATCTCCACCGCCACCCTGGAAACCCACCCAA
CAACACCTCCAACCAACAAGGAGCGTGAAAAGGGCGACACGGCTCGAGAC
GAAGAAAACGCGGAGGAGAGAAGTCAGTTGGTTGCACAGGGGCCAGGACA
GGGGGATCCGAGTCGCACGGTGACTTGCATGCGATGCCAGGAAAGCCTGC
CATTTCTCCTGGTGCCTTCTCACGGCGCCAAATGTAAGGGCAAGAAAGAG
AGCGGGTTTCACCTTGGTGCGACAGCGGCAGCACCACCCGTTGCCTCCGA
GAGGCAGGAACAGGAGCTATCCTTGAGATGCCCCGCCAAGAGTACTGAGA
TTGAGAGTAAGTCGAAAACCCTCACGGCGGCTGCAGAAAAGAGTGCGCCC
AGCGAAGGACTGTCTCAGTCGTCAATTTCAGGGAGCGATTGGAGGAAAAG
CCCTTCTCCGCTCACGTCGCCGAGGGACCTCGGTATGCCAAGGCCATTTT
CTTCTCGGTTGGGGGCACCTCTTTCTCCGCCCGCCGCCGGTACTAAGGCT
TGGCACGGGGCGTGCCGAACAGAGGAGGGGGTGCCTCCGGGTGCAAAGGT
TCCTCTTTCGCCCGCTAGATCGAAAAACGTCCGGACTTGGGGGACGAGGC
AAGTGACTTCCTGGCTGAGAGACATCATGCGACCACCGAGGGCTGACGTG
ATCTCGAGGTTCCATGATGGTGGTGTCGACGGCACCACGCTGCTCGGGAT
AACAGACAGGGTTGTGAGCTTCGGCTGGTTCGGTGCCCCTTCCAGTGCGG
CGTCAAGGTGTTGGTGCGGAACCTCGACAAGCACAAGAACTCTTGTCCGA
TGAGACAGTCTGGTGAAAACAAAGAAGACGTTGAATCCGCGGCATCAAGT
GGGTCCATCTCCACCGCCACCCTGGAAACCCACCCAACAACACCTCCAAC
CAACAAGGAGCGTGAAAAGGGCGACACGGCTCGAGACGAAGAAAACGCGG
AGGAGAGAAGTCAGTTGGTTGCACAGGGGCCAGGACAGGGGGATCCGAGT
CGCACGGTGACTTGCATGCGATGCCAGGAAAGCCTGCCATTTCTCCTGGT
GCCTTCTCACGGCGCCAAATGTAAGGGCAAGAAAGAGAGCGGGTTTCACC
TTGGTGCGACAGCGGCAGCACCACCCGTTGCCTCCGAGAGGCAGGAACAG
GAGCTATCCTTGAGATGCCCCGCCAAGAGTACTGAGATTGAGAGTAAGTC
GAAAACCCTCACGGCGGCTGCAGAAAAGAGTGCGCCCAGCGAAGGACTGT
CTCAGTCGTCAATTTCAGGGAGCGATTGGAGGAAAAGCCCTTCTCCGCTC
ACGTCGCCGAGGGACCTCGGTATGCCAAGGCCATTTTCTTCTCGGTTGGG
GGCACCTCTTTCTCCGCCCGCCGCCGGTACTAAGGCTTGGCACGGGGCGT
GCCGAACAGAGGAGGGGGTGCCTCCGGGTGCAAAGGTTCCTCTTTCGCCC
GCTAGATCGAAAAACGTCCGGACTTGGGGGACGAGGCAAGTGACTTCCTG
GCTGAGAGACATCATGCGACCACCGAGGGCTGACGTGATCTCGAGGTTCC
ATGATGGTGGTGTCGACGGCACCACGCTGCTCGGGATAACAGACAGGTAT
CTCCTGCATCCGACAGAGGGCATGGGAATCACCGACGAAAGCACCCGCCG
GCAAATTCTTGAGGCGCTGGGCTCTCTAAGGGAATAAGTATCTCCTGCAT
CCGACAGAGGGCATGGGAATCACCGACGAAAGCACCCGCCGGCAAATTCT
TGAGGCGCTGGGCTCTCTAAGGGAATAA
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