mRNA_L-elsbetiae_contig19111.5640.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19111.5640.1
Unique NamemRNA_L-elsbetiae_contig19111.5640.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19111.5640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19111contigL-elsbetiae_contig19111:252..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size398
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.6869466-CDS-L-elsbetiae_contig19111:251..6471622815794.6869466-CDS-L-elsbetiae_contig19111:251..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19111 252..647 +
1691683107.404299-CDS-L-elsbetiae_contig19111:251..6471691683107.404299-CDS-L-elsbetiae_contig19111:251..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19111 252..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19111.5640.1prot_L-elsbetiae_contig19111.5640.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19111 252..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19111.5640.1

>prot_L-elsbetiae_contig19111.5640.1 ID=prot_L-elsbetiae_contig19111.5640.1|Name=mRNA_L-elsbetiae_contig19111.5640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
DEHSPSTAAAVHSSFRSGEICTFHPTVSNRPLFGRTGHALLREKKHTRRA
NQQKQQTHEDSQDNPLQEKGTEDSRPRCARCECLIVDTRRYCTGFSGRTI
RTNSNFRGTSSWILNLNLQKSVLLFSTIPFFP
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mRNA from alignment at L-elsbetiae_contig19111:252..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19111.5640.1 ID=mRNA_L-elsbetiae_contig19111.5640.1|Name=mRNA_L-elsbetiae_contig19111.5640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=398bp|location=Sequence derived from alignment at L-elsbetiae_contig19111:252..649+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAACATAGTCCGAGCACAGCAGCAGCGGTGCACAGTAGCTTTCGATC
TGGAGAAATTTGTACTTTCCATCCAACCGTCTCAAATCGGCCACTTTTCG
GTCGCACCGGTCATGCTTTGCTGCGCGAAAAAAAGCATACACGCCGTGCG
AACCAACAGAAACAGCAGACACACGAAGATAGCCAAGACAATCCTCTTCA
AGAAAAGGGTACTGAGGACAGCCGACCTCGTTGCGCCAGATGTGAATGTC
TGATCGTAGACACACGTCGTTATTGTACTGGTTTCAGCGGCAGAACAATT
AGAACCAACAGTAATTTCCGCGGAACTTCAAGTTGGATCCTCAACCTTAA
CCTGCAAAAAAGTGTGTTGCTGTTTTCGACCATCCCCTTCTTCCCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19111:252..649+

>mRNA_L-elsbetiae_contig19111.5640.1 ID=mRNA_L-elsbetiae_contig19111.5640.1|Name=mRNA_L-elsbetiae_contig19111.5640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig19111:252..649+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAACATAGTCCGAGCACAGCAGCAGCGGTGCACAGTAGCTTTCGATC
TGGAGAAATTTGTACTTTCCATCCAACCGTCTCAAATCGGCCACTTTTCG
GTCGCACCGGTCATGCTTTGCTGCGCGAAAAAAAGCATACACGCCGTGCG
AACCAACAGAAACAGCAGACACACGAAGATAGCCAAGACAATCCTCTTCA
AGAAAAGGGTACTGAGGACAGCCGACCTCGTTGCGCCAGATGTGAATGTC
TGATCGTAGACACACGTCGTTATTGTACTGGTTTCAGCGGCAGAACAATT
AGAACCAACAGTAATTTCCGCGGAACTTCAAGTTGGATCCTCAACCTTAA
CCTGCAAAAAAGTGTGTTGCTGTTTTCGACCATCCCCTTCTTCCCAGATG
AACATAGTCCGAGCACAGCAGCAGCGGTGCACAGTAGCTTTCGATCTGGA
GAAATTTGTACTTTCCATCCAACCGTCTCAAATCGGCCACTTTTCGGTCG
CACCGGTCATGCTTTGCTGCGCGAAAAAAAGCATACACGCCGTGCGAACC
AACAGAAACAGCAGACACACGAAGATAGCCAAGACAATCCTCTTCAAGAA
AAGGGTACTGAGGACAGCCGACCTCGTTGCGCCAGATGTGAATGTCTGAT
CGTAGACACACGTCGTTATTGTACTGGTTTCAGCGGCAGAACAATTAGAA
CCAACAGTAATTTCCGCGGAACTTCAAGTTGGATCCTCAACCTTAACCTG
CAAAAAAGTGTGTTGCTGTTTTCGACCATCCCCTTCTTCCCA
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