mRNA_L-elsbetiae_contig190.5591.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig190.5591.1
Unique NamemRNA_L-elsbetiae_contig190.5591.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: D8LR48_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR48_ECTSI)

HSP 1 Score: 456 bits (1173), Expect = 5.040e-152
Identity = 238/261 (91.19%), Postives = 248/261 (95.02%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSSAIR 783
            MSN TYDLVWRETM+ELNEQVHIEDNTL+VAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPN D+RFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLD+AVPRYFKQD A+EI ARDTLVKGYIKLKLNT DG+PLDD+EDPD+AAGEM LDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ   R  ++  R
Sbjct:    1 MSNATYDLVWRETMAELNEQVHIEDNTLNVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNADMRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDVAVPRYFKQDVAVEITARDTLVKGYIKLKLNTADGLPLDDKEDPDSAAGEMTLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQRLFRGSAARRR 261          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A835Z194_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z194_9STRA)

HSP 1 Score: 331 bits (848), Expect = 7.120e-111
Identity = 179/264 (67.80%), Postives = 212/264 (80.30%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSSAIRLPR 792
            MSN TYD +WRETM+EL+EQVHIEDN+LDVA+GD  XXXXX+ATI+EAFQHFACLYIKY+QI +RLE C+DAMVHPQKR+DVKMVLELV RRV+ELKH LVKWNPPN DVR PPP PE+AFPW+YVNLDDILVDLKL P+TLD+ VPRYF++D+A EI ARD LV     + L   +G  L            M +D+AL++IQRNERGRQG+QRALL+K+LREEEK+R +YD+ DQ+EMD EIAAANIQ   R  S+  R  R
Sbjct:    1 MSNSTYDAMWRETMAELDEQVHIEDNSLDVADGDPXXXXXXKATIVEAFQHFACLYIKYLQIMRRLEACHDAMVHPQKRMDVKMVLELVTRRVIELKHALVKWNPPNGDVRLPPPMPEEAFPWEYVNLDDILVDLKLPPETLDVPVPRYFREDNAEEIEARDKLV-----VLLEEGNGTTLQST---------MTVDQALDVIQRNERGRQGRQRALLVKDLREEEKRRHMYDSADQVEMDAEIAAANIQRLFRGSSARRRALR 250          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A835Z665_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z665_9STRA)

HSP 1 Score: 331 bits (848), Expect = 4.790e-104
Identity = 179/264 (67.80%), Postives = 212/264 (80.30%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSSAIRLPR 792
            MSN TYD +WRETM+EL+EQVHIEDN+LDVA+GD  XXXXX+ATI+EAFQHFACLYIKY+QI +RLE C+DAMVHPQKR+DVKMVLELV RRV+ELKH LVKWNPPN DVR PPP PE+AFPW+YVNLDDILVDLKL P+TLD+ VPRYF++D+A EI ARD LV     + L   +G  L            M +D+AL++IQRNERGRQG+QRALL+K+LREEEK+R +YD+ DQ+EMD EIAAANIQ   R  S+  R  R
Sbjct:    1 MSNSTYDAMWRETMAELDEQVHIEDNSLDVADGDPXXXXXXKATIVEAFQHFACLYIKYLQIMRRLEACHDAMVHPQKRMDVKMVLELVTRRVIELKHALVKWNPPNGDVRLPPPMPEEAFPWEYVNLDDILVDLKLPPETLDVPVPRYFREDNAEEIEARDKLV-----VLLEEGNGTTLQST---------MTVDQALDVIQRNERGRQGRQRALLVKDLREEEKRRHMYDSADQVEMDAEIAAANIQRLFRGSSARRRALR 250          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A6H5KT47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT47_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 2.110e-97
Identity = 155/176 (88.07%), Postives = 163/176 (92.61%), Query Frame = 1
Query:  250 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR---------YFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ 750
            MVLELVIRRVLELKHELVKWNPPN D+RFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLD+AVPR         YFKQDSA+EI ARDTLVKGYIKLKL T DG+PLDD+EDPD+AAGEM+LD+ALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ
Sbjct:    1 MVLELVIRRVLELKHELVKWNPPNADMRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDVAVPRQELRGEGGRYFKQDSAVEITARDTLVKGYIKLKLKTADGLPLDDKEDPDSAAGEMSLDQALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ 176          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A067D3Y6_SAPPC (AAA domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D3Y6_SAPPC)

HSP 1 Score: 306 bits (783), Expect = 1.470e-94
Identity = 162/258 (62.79%), Postives = 197/258 (76.36%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSS 774
            M+N T+D  W+  M+ELNEQVHIED+TLD  EG E        +++EAFQH+ACLYIKYVQIF  LE CYD MVHPQKRIDVK ++ELV+ RV+ELKH+LVKWNPPN DVR     PEQ FPW+YVNLDD+LVDLKL P  L++ VPRYF +DS+ E+  RD LVKGY+KLKL   + + +DD +   + A  M+LD+AL+IIQRNERGRQG+QR LL+ ELREEEK+RRIYD T   EMDPE+AAANIQ   R  +S
Sbjct:    1 MANYTFDTKWQSAMTELNEQVHIEDHTLDAEEGQE-VQPPPDVSMLEAFQHYACLYIKYVQIFTTLEECYDQMVHPQKRIDVKKIMELVMTRVVELKHDLVKWNPPNPDVRT---TPEQNFPWEYVNLDDLLVDLKLPPSLLEVPVPRYFVEDSSAELKKRDRLVKGYMKLKLGV-EALYIDDSDASVSLADAMSLDEALQIIQRNERGRQGRQRGLLVHELREEEKQRRIYDNTQTPEMDPELAAANIQRVFRGHNS 253          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A024URR3_9STRA (AAA domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024URR3_9STRA)

HSP 1 Score: 301 bits (772), Expect = 6.400e-93
Identity = 156/258 (60.47%), Postives = 198/258 (76.74%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSS 774
            M+N TYD  W+  M+ELNEQVHIED+TLDV +G E      + +++EAFQH+ACLYIKYVQIF  LE CYD MVHPQKRIDVK ++ELV+ RV+ELKH+LVKWNPPN DVR     PE+ FPW+YVNLDD+LVDLKL P  L++ VP+YF +DS+ ++  RD LVKGY+KLKL   D +P++  E+  + A  M LD+A+++IQRNERGRQGKQR  L++ELREEEK+RR+YD     EM+PE+AAANIQ   R  +S
Sbjct:    1 MANYTYDTKWQSAMTELNEQVHIEDHTLDVEDGQEATPPP-EVSMLEAFQHYACLYIKYVQIFANLEECYDQMVHPQKRIDVKQIMELVMTRVVELKHDLVKWNPPNPDVRT---TPERNFPWEYVNLDDLLVDLKLPPSLLEVPVPKYFVEDSSADLKKRDRLVKGYMKLKLGV-DTLPVEVAEESVSLADTMTLDEAIQVIQRNERGRQGKQRGALVRELREEEKQRRLYDNAQTPEMEPELAAANIQRVFRGHNS 253          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A6G0XPD9_9STRA (AAA domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XPD9_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.320e-92
Identity = 155/258 (60.08%), Postives = 199/258 (77.13%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSS 774
            M+N T+D  W+  M+ELNEQVHIED+TLDV EG +      + +++EAFQH+ACLYIKYVQIF  LE CYD MVHPQKRIDVK ++ELV+ RV+ELKH+LVKWNPPN DVR     PE+ FPW+YVNLDD+LVDLKL P+ L++ VP+YF +D++ E+  RD LVKGY+KLKL   + VP++  E+  +    M LD+A+++IQRNERGRQGKQR  L++ELREEEK+RR+YD+    EMDPE+AAANIQ   R  +S
Sbjct:    1 MANYTFDSKWQSAMTELNEQVHIEDHTLDVEEGQD-VQPPPEVSMLEAFQHYACLYIKYVQIFANLEECYDQMVHPQKRIDVKQIMELVMTRVVELKHDLVKWNPPNPDVRT---TPERNFPWEYVNLDDLLVDLKLPPNLLEVPVPKYFVEDNSTELKKRDRLVKGYMKLKLGV-ESVPVEVVEENVSITDTMTLDEAIQVIQRNERGRQGKQRGALVRELREEEKQRRLYDSAQTPEMDPELAAANIQRVFRGHNS 253          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A8K1C8E9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8E9_PYTOL)

HSP 1 Score: 296 bits (759), Expect = 6.440e-91
Identity = 163/266 (61.28%), Postives = 199/266 (74.81%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXX--QATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSSAIRLPR 792
            M++ TYD  W+E M+ELNEQVHIED+TL  A+G EP       QA+I+EAFQH+ACLYIKY+QI  RL  CYD MVHPQKRIDVK V+E+V  R++ELKH LVKWNPPN DVR     PE++FPW+YVNLDDILVDLKL P+TL++ VP+ F  D A E+  R+ LVKGY+KLK +  D + LD  EDP A    ++LD+A+ IIQRNERGRQG+QR LL++ELREEEK+RRIY+A    EMDP+IAAANIQ   R   S  R  R
Sbjct:    1 MASSTYDRRWQEAMAELNEQVHIEDHTLS-ADGQEPGTVEAPPQASIVEAFQHYACLYIKYIQILTRLSECYDQMVHPQKRIDVKQVMEVVTTRIVELKHALVKWNPPNPDVRT---NPERSFPWEYVNLDDILVDLKLPPETLEVPVPKSFLDDQAEELLRRERLVKGYMKLK-HGVDVIYLDSMEDPLALHDALSLDEAIAIIQRNERGRQGRQRGLLVQELREEEKQRRIYEAAQTPEMDPDIAAANIQRVFRGYHSRARAQR 261          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A1V9Z5F7_9STRA (IQ and AAA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5F7_9STRA)

HSP 1 Score: 301 bits (770), Expect = 6.790e-90
Identity = 158/258 (61.24%), Postives = 197/258 (76.36%), Query Frame = 1
Query:    1 MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQVYHRNPSS 774
            M   T+D  W+  M+ELNEQVHIED+TLD  EG E      + +++EAFQH+ACLYIKYVQIF  LE CYD MVHPQKRIDVK ++ELV+ RV+ELKH+LVKWNPPN DVR     PEQ FPW+YVNLDD+LVDLKL P  L++ VP+YF +D+++E+  RD LVKGY+KLKL   + + ++D E   + A  M+LD+AL+IIQRNERGRQG+QR +L+ ELREEEK+RRIYD T   EMDPE+AAANIQ   R  +S
Sbjct:  826 MLRSTFDTKWQSAMTELNEQVHIEDHTLDAEEGQE-VQPPPEVSMLEAFQHYACLYIKYVQIFTTLEECYDQMVHPQKRIDVKRIMELVMTRVVELKHDLVKWNPPNPDVRT---TPEQNFPWEYVNLDDLLVDLKLPPSLLEVPVPKYFVEDNSVELKKRDRLVKGYMKLKLGV-EALYVEDTETSVSMADAMSLDEALQIIQRNERGRQGRQRGILVYELREEEKQRRIYDNTQTPEMDPELAAANIQRVFRGHNS 1078          
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Match: A0A5D6Y8C7_9STRA (WW domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8C7_9STRA)

HSP 1 Score: 290 bits (742), Expect = 4.140e-86
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 1
Query:   13 TYDLVWRETMSELNEQVHIEDNTLDVAEGDE--PXXXXXQATIMEAFQHFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYFKQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKALEIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ 750
            TYD  W+E M+ELNEQVHIED+TL  AEG +  P     QA+I+EAFQH+ACLYIKY+QI KRL  CYD MVHPQKRIDVK V+E+V  R++ELKH+LVKWNPPN DV+     PE++FPW+YVNLDDILVDLKL P+TL+I VP+ F  + A E+  R+ LVKGY+KLK +  D + LD  E+  + AG M++D+A+ ++QRNERGRQGKQR +L+KELREEEK+R++Y++    EMDP+IAAANIQ
Sbjct:    4 TYDRRWQEAMAELNEQVHIEDHTLS-AEGQDATPNEAPPQASIVEAFQHYACLYIKYIQILKRLADCYDQMVHPQKRIDVKQVMEVVTTRIVELKHDLVKWNPPNPDVQT---QPERSFPWEYVNLDDILVDLKLPPETLEIPVPKSFADEHAEELLRRERLVKGYMKLK-HGVDMIYLDSNEEQLSIAGAMSIDEAIAVLQRNERGRQGKQRGVLVKELREEEKQRKLYESAQAPEMDPDIAAANIQ 246          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig190.5591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR48_ECTSI5.040e-15291.19Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835Z194_9STRA7.120e-11167.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z665_9STRA4.790e-10467.80AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5KT47_9PHAE2.110e-9788.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067D3Y6_SAPPC1.470e-9462.79AAA domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A024URR3_9STRA6.400e-9360.47AAA domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A6G0XPD9_9STRA1.320e-9260.08AAA domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A8K1C8E9_PYTOL6.440e-9161.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9Z5F7_9STRA6.790e-9061.24IQ and AAA domain-containing protein n=1 Tax=Thrau... [more]
A0A5D6Y8C7_9STRA4.140e-8661.69WW domain-containing protein n=1 Tax=Pythium brass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig190contigL-elsbetiae_contig190:19493..22165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score455.3
Seed ortholog evalue2e-125
Seed eggNOG ortholog2880.D8LR48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG0464@1,KOG0740@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-06_004370.1
Exons5
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig190.5591.1prot_L-elsbetiae_contig190.5591.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig190 19493..22165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.6045415-CDS-L-elsbetiae_contig190:19492..195521622815790.6045415-CDS-L-elsbetiae_contig190:19492..19552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 19493..19552 +
1691683104.7291408-CDS-L-elsbetiae_contig190:19492..195521691683104.7291408-CDS-L-elsbetiae_contig190:19492..19552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 19493..19552 +
1622815790.6186998-CDS-L-elsbetiae_contig190:20309..204981622815790.6186998-CDS-L-elsbetiae_contig190:20309..20498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 20310..20498 +
1691683104.7404869-CDS-L-elsbetiae_contig190:20309..204981691683104.7404869-CDS-L-elsbetiae_contig190:20309..20498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 20310..20498 +
1622815790.6280253-CDS-L-elsbetiae_contig190:20999..211931622815790.6280253-CDS-L-elsbetiae_contig190:20999..21193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21000..21193 +
1691683104.7508821-CDS-L-elsbetiae_contig190:20999..211931691683104.7508821-CDS-L-elsbetiae_contig190:20999..21193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21000..21193 +
1622815790.637176-CDS-L-elsbetiae_contig190:21398..215491622815790.637176-CDS-L-elsbetiae_contig190:21398..21549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21399..21549 +
1691683104.7602563-CDS-L-elsbetiae_contig190:21398..215491691683104.7602563-CDS-L-elsbetiae_contig190:21398..21549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21399..21549 +
1622815790.647576-CDS-L-elsbetiae_contig190:21961..221651622815790.647576-CDS-L-elsbetiae_contig190:21961..22165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21962..22165 +
1691683104.7690995-CDS-L-elsbetiae_contig190:21961..221651691683104.7690995-CDS-L-elsbetiae_contig190:21961..22165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig190 21962..22165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig190.5591.1

>prot_L-elsbetiae_contig190.5591.1 ID=prot_L-elsbetiae_contig190.5591.1|Name=mRNA_L-elsbetiae_contig190.5591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MSNRTYDLVWRETMSELNEQVHIEDNTLDVAEGDEPPPPPPQATIMEAFQ
HFACLYIKYVQIFKRLEMCYDAMVHPQKRIDVKMVLELVIRRVLELKHEL
VKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPRYF
KQDSAIEIAARDTLVKGYIKLKLNTTDGVPLDDEEDPDAAAGEMNLDKAL
EIIQRNERGRQGKQRALLLKELREEEKKRRIYDATDQLEMDPEIAAANIQ
VYHRNPSSAIRLPRM*
back to top

mRNA from alignment at L-elsbetiae_contig190:19493..22165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig190.5591.1 ID=mRNA_L-elsbetiae_contig190.5591.1|Name=mRNA_L-elsbetiae_contig190.5591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2673bp|location=Sequence derived from alignment at L-elsbetiae_contig190:19493..22165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAACAGGACGTATGACTTGGTGTGGCGAGAAACGATGTCAGAGCT GAATGAGCAGGTACGCACATACTACCTCGATATCCATGCAAGATAGGCTG CAGACAACATGTATCTAGTCTAAATAAGTCTACCTAAGAAGCTACTGTGT CTACCTGTCTTGTACTCCATATTACAGTACGGTGTTGCTCTCAACACTTT GCCTCGATCGAAATTGCTATCGGTTCGATTGAACCACGTGGGCTTCGAAG GCACAGCATGGAACGTATTTCCAACAGTAGACATGGCTGCGTTTACATAC ATAACAGAAGACTACAGCAGTAAATAGATTGGATCAGACAGGGGTAGCTG CATTATATTTTTGACCGTACATTGTATCATACTTTGCGTGAAACCTCTTC ATAAAAAGAAAAAAATCTGCAACAATAGTCTACACTAGTGCCCCGTTTTT TGGGGACGACTTTTTCACTTTTTCATAGGTTGGACGTATGTACATATCTA CTTGTAGACGGCTGACGTTTTGTAGAACTTAAAAAAAGTAGTCTTATACT GTACTGCTGGGCCACCTCTGTCCACTATTGCTGTTGTAAACTCGGGCACG GCTGCACTTCAATCTAGACTATGTAGCAGCTACGAGACAAGATATGAACG AATACCATTTTTCCCGGACTGCCCATCATCCACCTTCTTCAACCATTTAT GCAACGTTTTCTGTGTCGGGCCTAACCGAGTCGACTTGATTAGAAGGAGC TTATTTAGGTATGTGTGTGCAAAGCTTAAGCGTCATTTTGCTCATCCGAA CTCGCCCGATTCTGAAGGTGCACATCGAGGACAATACGCTAGACGTAGCC GAGGGCGACGAGCCGCCCCCGCCGCCCCCACAAGCCACCATCATGGAAGC CTTCCAGCATTTCGCCTGCCTGTACATCAAGTACGTGCAGATCTTCAAGC GCCTAGAAATGTGCTACGACGCTATGGTGCACCCGCAGAAGCGGATTGAC GTCAAGGTATACACGGGTATCTAGGGTTTTATGTTCTAGCCCAAGCGTGT TGCTGAGCACAGCAGGCGATGGGAGAACCGCATCATCAGTAGAAGAACAA CAATTCGAGATGGGCATATTGGGAGAGGTTTAATTGCCATGTATACGGGT TGGGTTTCGATGAGGATCAGTAGGGAAAAGCGTGGCATTCCGGGGGCGCG AAATATCGATCCAACTATGCAAGGCATCTACATGCAGCCATAAACATTCG TGGACCCGAAGGGAGATTCAAGCCGAAAACCGTCCTCCACCCCTTGCCTT AAATGTGTGCACGAGGGAGAGCTCTAACCATCTCAGAATGGAGCGCCTAC CCATCCTCATGCCTAAATCTGGGGCCTATATTGTTCCGATACCAAACCAG TGCGCGGTCGGGCTTTGCGGGCCGTGCTTCCTGCTTGCTTCGTTCACACG CACACGCATGCCTGGCCAGCAATACTGCCGTTGCCCCGTGCACATGCATT TGCTCAGATGGTTCTGGAGCTGGTGATTCGGCGAGTGCTGGAGCTCAAGC ACGAGCTCGTAAAGTGGAATCCCCCGAACGTGGACGTGCGTTTTCCGCCG CCAGCCCCGGAGCAGGCGTTTCCCTGGGACTATGTCAACCTCGATGACAT CCTGGTAGACCTCAAGCTTTCGCCCGACACGCTCGACATTGCAGTGCCCA GGTAAGAGCTGACGACAAAGGAGGGGTGAGGCTACGAGAGAGGGGTGCTT GAGAGGAGAGTAGCCCGTTGCGCTTGCCAGACCGTGAGATTTCACTCCCT CCCGACATAAACCCCGCCCCAGCGATTGCCCCCTCGTGTCTTCTCAGCCG TCATCCTCCCTCCAATGGGGGCTTTCTTTGCTCTCTTTTCTCTTTCTCTC CCCCAGGTACTTCAAGCAGGACAGCGCCATTGAAATCGCCGCTCGAGACA CACTGGTCAAGGGCTACATCAAGCTCAAGCTCAACACCACAGACGGCGTC CCGCTAGACGACGAAGAGGACCCCGACGCGGCGGCCGGAGAGATGAACCT CGACAAGGTGGGGATGCCTACCCGGGGCAGGTCGCGTTGCCGTACGGCGG TGCTTGCATACTTTGCTGCCCCCCCTGGTGGTTTCCTCGGCCGTCGATCA CGCATCTTAGAAAGGAGGGAGGGCGACGGTGGATGGGGAACTGCTAAATT ACTGCCGAGGGCAGCTTGCCTTTCCTGTCTATTCGGACGACGGCGGTACC GCAATGACCAGACCACTGCATTTTAAGCCCTCGCCAAGCGATTCAGGCGT GCAGAGTTACAGGGGCCATATATAGCAACACACAAGCTCTCTGGTTACAA TCGATTGCTTGATGCCACTCTCCCATTCGGCGGCGCCCTGCTTTGCCACC GGTGCACCGTCCCTCGATACTCGGCGCCCCGGCTCCCAAACAAACCCGGC TCGATCGGCGGCCTCCAAGGCGCTCGAGATCATTCAGCGAAACGAGCGAG GCAGGCAGGGAAAACAGAGAGCCCTGCTGCTGAAGGAGCTCAGGGAGGAG GAGAAAAAGCGGCGCATCTACGACGCGACGGACCAGCTGGAGATGGACCC GGAAATTGCAGCCGCTAACATCCAGGTTTATCATCGAAACCCATCGTCGG CCATTCGTTTGCCTCGTATGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig190:19493..22165+

>mRNA_L-elsbetiae_contig190.5591.1 ID=mRNA_L-elsbetiae_contig190.5591.1|Name=mRNA_L-elsbetiae_contig190.5591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig190:19493..22165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAACAGGACGTATGACTTGGTGTGGCGAGAAACGATGTCAGAGCT
GAATGAGCAGATGTCTAACAGGACGTATGACTTGGTGTGGCGAGAAACGA
TGTCAGAGCTGAATGAGCAGGTGCACATCGAGGACAATACGCTAGACGTA
GCCGAGGGCGACGAGCCGCCCCCGCCGCCCCCACAAGCCACCATCATGGA
AGCCTTCCAGCATTTCGCCTGCCTGTACATCAAGTACGTGCAGATCTTCA
AGCGCCTAGAAATGTGCTACGACGCTATGGTGCACCCGCAGAAGCGGATT
GACGTCAAGGTGCACATCGAGGACAATACGCTAGACGTAGCCGAGGGCGA
CGAGCCGCCCCCGCCGCCCCCACAAGCCACCATCATGGAAGCCTTCCAGC
ATTTCGCCTGCCTGTACATCAAGTACGTGCAGATCTTCAAGCGCCTAGAA
ATGTGCTACGACGCTATGGTGCACCCGCAGAAGCGGATTGACGTCAAGAT
GGTTCTGGAGCTGGTGATTCGGCGAGTGCTGGAGCTCAAGCACGAGCTCG
TAAAGTGGAATCCCCCGAACGTGGACGTGCGTTTTCCGCCGCCAGCCCCG
GAGCAGGCGTTTCCCTGGGACTATGTCAACCTCGATGACATCCTGGTAGA
CCTCAAGCTTTCGCCCGACACGCTCGACATTGCAGTGCCCAGATGGTTCT
GGAGCTGGTGATTCGGCGAGTGCTGGAGCTCAAGCACGAGCTCGTAAAGT
GGAATCCCCCGAACGTGGACGTGCGTTTTCCGCCGCCAGCCCCGGAGCAG
GCGTTTCCCTGGGACTATGTCAACCTCGATGACATCCTGGTAGACCTCAA
GCTTTCGCCCGACACGCTCGACATTGCAGTGCCCAGGTACTTCAAGCAGG
ACAGCGCCATTGAAATCGCCGCTCGAGACACACTGGTCAAGGGCTACATC
AAGCTCAAGCTCAACACCACAGACGGCGTCCCGCTAGACGACGAAGAGGA
CCCCGACGCGGCGGCCGGAGAGATGAACCTCGACAAGGTACTTCAAGCAG
GACAGCGCCATTGAAATCGCCGCTCGAGACACACTGGTCAAGGGCTACAT
CAAGCTCAAGCTCAACACCACAGACGGCGTCCCGCTAGACGACGAAGAGG
ACCCCGACGCGGCGGCCGGAGAGATGAACCTCGACAAGGCGCTCGAGATC
ATTCAGCGAAACGAGCGAGGCAGGCAGGGAAAACAGAGAGCCCTGCTGCT
GAAGGAGCTCAGGGAGGAGGAGAAAAAGCGGCGCATCTACGACGCGACGG
ACCAGCTGGAGATGGACCCGGAAATTGCAGCCGCTAACATCCAGGTTTAT
CATCGAAACCCATCGTCGGCCATTCGTTTGCCTCGTATGTGAGCGCTCGA
GATCATTCAGCGAAACGAGCGAGGCAGGCAGGGAAAACAGAGAGCCCTGC
TGCTGAAGGAGCTCAGGGAGGAGGAGAAAAAGCGGCGCATCTACGACGCG
ACGGACCAGCTGGAGATGGACCCGGAAATTGCAGCCGCTAACATCCAGGT
TTATCATCGAAACCCATCGTCGGCCATTCGTTTGCCTCGTATGTGA
back to top