mRNA_L-elsbetiae_contig1892.5558.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1892.5558.1
Unique NamemRNA_L-elsbetiae_contig1892.5558.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 1.210e-81
Identity = 122/141 (86.52%), Postives = 134/141 (95.04%), Query Frame = 2 
Query:  428 STTYRQLVLRLPDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGKFDRTEV 850
            STTYRQLVLRLPDGLKE MR+RVAAD  ++GVDFTPEKKGSRRFTFTM+GKKYPARLVDMPC+LE+QKTLDK TFFKSGD+GQMLIVYKDE+AY+KDDG+A+ VGPQ LYPDGLTPPTKNIVRRRFVKARPD+GKFDR EV
Sbjct:    2 STTYRQLVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEV 142
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.990e-41
Identity = 75/142 (52.82%), Postives = 104/142 (73.24%), Query Frame = 2 
Query:  425 SSTTYRQLVLRLPDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGKFDRTEV 850
            S+  YRQL+LR+PD LK  +R+RV A  S D +DF  + +   ++ FT++G++YPARLV++PC LE+ KT D   ++KS DIGQMLIVY+DE A+  D   A++ GP + Y DG+TPPT+NIVRR+FVKARP  GKF + +V
Sbjct:    5 SAGLYRQLILRVPDKLKGRVRERVQAGQS-DNMDFVQDGENPLKYVFTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYEDEDAFNADAEDASI-GPAQYYADGITPPTRNIVRRKFVKARPVLGKFPKAQV 144
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.800e-19
Identity = 58/148 (39.19%), Postives = 83/148 (56.08%), Query Frame = 2 
Query:  440 RQLVLR-LPDGLKETMRDRVAADASLDGVDF---------TPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGKFDRTEVS 853
            RQ++LR LP+ L E +R+++  + SL  V F         T +   S++  F +    YP  LV++PC +ES KT D+ T FKS DIGQMLIV+++E    K +    V   Q  +  GLTPPT  + RRRF + + +   F R EVS
Sbjct:   14 RQVILRILPESLLEAIREKLV-EGSLSDVQFFFEDPPALSTLQVSPSQKMVFQLGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFENEGEREKAEKECGV--EQRFFHSGLTPPTSYVTRRRFAQTKSELRSFTRKEVS 158
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A397SH43_9GLOM (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SH43_9GLOM)

HSP 1 Score: 90.5 bits (223), Expect = 5.930e-18
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 2 
Query:  443 QLVLRL--PDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIV----YKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVK 811
            Q +LRL  P+ +K+  R++V      D +      K  RR  FT   +KY ARLVD+PCI+E+QKT +K  ++K  DI QMLIV     +DE  + ++  S+ V   +  +PDGLTPP KNI +RRF K
Sbjct:   78 QFILRLMVPEDVKQKFREKVKNGKFTDDIGIV--FKDPRRAIFTFENQKYRARLVDLPCIIEAQKTFNKIQYYKVADICQMLIVESQIQEDEQIFTENPKSSNV--DEFEWPDGLTPPLKNIRKRRFRK 202
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A7S4K4B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K4B9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.880e-18
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 2 
Query:  512 LDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDG--SATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGKFDRTEVS 853
            LDGV   P + GS  + F  +G  YPARLV++PC +E  KT D  T++K  D+GQ+LIVY+DE+   + +        G    Y  GLTPP K +V+RRF     D     R+EVS
Sbjct:   23 LDGVSCEPSEDGSTLWHFHCDGASYPARLVNLPCPVELHKTFDHATYYKCSDVGQILIVYEDETHLEEAESVPGYRTEGFPSYYHSGLTPPMKRVVQRRFDSREHDAVAPPRSEVS 138
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A7S3JUW2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.170e-17
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 2 
Query:  422 MSSTTYRQLVLRL--PDGLKETMRDRVAADASLDGVDF--------TPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKN-TFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGK 832
            MS+T   QL+L    PD L +        DA+  G +           E + SRR    + G  YP RLV++P ++E+ KT D     +K GD+GQ++IVY++E+A R D+G       Q +Y DG++PP KN V RRF KAR  + K
Sbjct:    1 MSTTVQTQLLLHAESPDVLAKLSE---LVDAAEGGGELEIVAEEREANENESSRRMKLVIMGHTYPTRLVNLPTLVETHKTFDNGKNVYKCGDVGQVVIVYQNEAARRADEGRTIHKAWQHVYQDGISPPLKNCVERRFAKARRRRAK 145
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A8J2T034_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T034_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.410e-17
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 2 
Query:  365 ERLYPGNRCRQ*KATPLRAMSSTTYRQ--LVLRLPD--GLKETMRDRVAADASLDGVDFTPEKKGSRR--------FTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDD-------GSATVVGPQELYPDGLTPPTKNIVRRRFVKAR 817
            +RL      R  +  P++ M++ +  Q  + LR  D       +  +VA D + +GV+FTPE   S +        F   ++    PARLV++P I+E+ KT D+ T+ K GD+GQ+L+V+KDES+  +D        GSA  +    ++PDGLTPP ++++RRRF KAR
Sbjct:   24 QRLRDAAAARARRRRPVQNMAARSDAQTLVALRFVDCPHAANRLEQKVAKDKT-EGVEFTPEGDTSVKQDDFHSLDFRCKIDDLDLPARLVNLPTIVETHKTWDRETYVKCGDVGQILLVFKDESSRTQDKARQAAHAGSAWSL----VHPDGLTPPLQDVIRRRFSKAR 188
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A3M6VLU5_9STRA (TAFII55_N domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLU5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.430e-16
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 2 
Query:  443 QLVLRLPDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKAR 817
            Q +L+LP  L + +R  +++  S + VD       ++ FT  +NGKKYPA++  +PCILE+ KT D N F+KSG+IGQ+ +V   E   +       ++   E  P G+TPP  N+V+R++ K +
Sbjct:    3 QYLLQLPKRLAQEVRTGISSGESAN-VDMV-SGADNKHFTLHVNGKKYPAKIAQLPCILETHKTYDDNFFYKSGEIGQIFVVTDKEDEKK-------LLETHEEVPSGITPPNTNVVKRKYEKTK 118
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A397VEC4_9GLOM (TAFII55 protein conserved region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VEC4_9GLOM)

HSP 1 Score: 89.0 bits (219), Expect = 2.470e-16
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 2 
Query:  443 QLVLRL--PDGLKETMRDRVAADASLDGVDFTPEK-----KGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYK----DESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVK 811
            Q +LRL  P+ +K+  R++V          F PE      K SRR  FT   +KY ARLVD+PCI+E+QKT +   F+K  DI QMLIV       E  +   +  A+    Q  +PDGLTPP KN+  RRF K
Sbjct:   91 QFILRLMVPEDVKQRFREKVRRQK------FAPEDVEIMFKDSRRAIFTFENQKYSARLVDLPCIIEAQKTFNNKQFYKVADICQMLIVESPIDTQEEVHMFTENMASSSIDQFEWPDGLTPPLKNVRNRRFRK 218
[Close]
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Match: A0A0P1AXK4_PLAHL (TAFII55_N domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXK4_PLAHL)

HSP 1 Score: 88.2 bits (217), Expect = 2.660e-16
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:  443 QLVLRLPDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTMNGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDDGSATVVGPQELYPDGLTPPTKNIVRRRFVKAR 817
            Q +L+LP  L + +R  +A   S + VD   E   ++ F+  +NGK YPA++V +P ILE+ KT D N F+KSG+IGQ+ +V  D    RK      ++  Q+  P+GLTPP  N+V+R++ K +
Sbjct:    3 QYLLQLPKRLAQEVRSGIANGDSAN-VDMVAEAD-NKHFSLQVNGKNYPAKIVQLPTILETHKTYDDNFFYKSGEIGQIFVV-TDREDERK------ILESQDEVPNGLTPPNTNVVKRKYDKTK 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1892.5558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI1.210e-8186.52TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA4.990e-4152.82TAFII55 protein conserved region-domain-containing... [more]
A0A7S2RHU4_9STRA1.800e-1939.19Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A397SH43_9GLOM5.930e-1842.64TAFII55 protein conserved region-domain-containing... [more]
A0A7S4K4B9_9STRA7.880e-1842.24Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3JUW2_9STRA2.170e-1737.84Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2T034_9STRA7.410e-1735.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3M6VLU5_9STRA1.430e-1636.80TAFII55_N domain-containing protein n=1 Tax=Perono... [more]
A0A397VEC4_9GLOM2.470e-1641.79TAFII55 protein conserved region-domain-containing... [more]
A0A0P1AXK4_PLAHL2.660e-1639.20TAFII55_N domain-containing protein n=1 Tax=Plasmo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1892contigL-elsbetiae_contig1892:237..3360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue3.9e-67
Seed eggNOG ortholog2880.D7G280
Preferred nameTAF7
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5414@1,KOG4011@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Exons4
Model size856
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1892.5558.1prot_L-elsbetiae_contig1892.5558.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1892 237..2180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.688779-CDS-L-elsbetiae_contig1892:236..3981622815786.688779-CDS-L-elsbetiae_contig1892:236..398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 237..398 -
1691683101.9659383-CDS-L-elsbetiae_contig1892:236..3981691683101.9659383-CDS-L-elsbetiae_contig1892:236..398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 237..398 -
1622815786.700045-CDS-L-elsbetiae_contig1892:1144..12831622815786.700045-CDS-L-elsbetiae_contig1892:1144..1283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 1145..1283 -
1691683101.9785159-CDS-L-elsbetiae_contig1892:1144..12831691683101.9785159-CDS-L-elsbetiae_contig1892:1144..1283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 1145..1283 -
1622815786.711786-CDS-L-elsbetiae_contig1892:2046..21801622815786.711786-CDS-L-elsbetiae_contig1892:2046..2180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 2047..2180 -
1691683101.986344-CDS-L-elsbetiae_contig1892:2046..21801691683101.986344-CDS-L-elsbetiae_contig1892:2046..2180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1892 2047..2180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.723261-UTR-L-elsbetiae_contig1892:2180..22141622815786.723261-UTR-L-elsbetiae_contig1892:2180..2214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1892 2181..2214 -
1691683101.9941206-UTR-L-elsbetiae_contig1892:2180..22141691683101.9941206-UTR-L-elsbetiae_contig1892:2180..2214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1892 2181..2214 -
1622815786.7336562-UTR-L-elsbetiae_contig1892:2973..33601622815786.7336562-UTR-L-elsbetiae_contig1892:2973..3360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1892 2974..3360 -
1691683102.0020723-UTR-L-elsbetiae_contig1892:2973..33601691683102.0020723-UTR-L-elsbetiae_contig1892:2973..3360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1892 2974..3360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1892.5558.1

>prot_L-elsbetiae_contig1892.5558.1 ID=prot_L-elsbetiae_contig1892.5558.1|Name=mRNA_L-elsbetiae_contig1892.5558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MSSTTYRQLVLRLPDGLKETMRDRVAADASLDGVDFTPEKKGSRRFTFTM
NGKKYPARLVDMPCILESQKTLDKNTFFKSGDIGQMLIVYKDESAYRKDD
GSATVVGPQELYPDGLTPPTKNIVRRRFVKARPDKGKFDRTEVS*
back to top

mRNA from alignment at L-elsbetiae_contig1892:237..3360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1892.5558.1 ID=mRNA_L-elsbetiae_contig1892.5558.1|Name=mRNA_L-elsbetiae_contig1892.5558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3124bp|location=Sequence derived from alignment at L-elsbetiae_contig1892:237..3360- (Laminarionema elsbetiae ELsaHSoW15)
CCTCGCCTGTGTGCCCCCCGTCGGCATCGACAAACGTGGCGTGCCGGCGC
TTAGTACTGCTGCTGAAAGAAGATAAAGCAAAAGAGTGGTAGAGTAAGTG
GGAGCTTCATTACGCTCTCGTCCTCCGAGGGTAAAGACGGATGCCAGCGG
GCCAGCGGGGCGGACCCAGGGGAGGTTCGACCGCGTTTTTGTCCCGAGCG
TGTGAGTTGTCCAGACGCTCGGACACAAACCGATCCAGCTGCACCCATTA
CGACAAGGACAAAGACTGCAGCGCTAGCGGTAGTGCGCATGCTTGGTAGT
GCGCCATCCATTATTCTACGCTTCCGGGGCACCAGAGTTTACTCCCTGGG
AAGCACAGCAGTGAGAGAGGTTGTATCCTGGGAACAGGTGCGCCCTCCCG
ACAATACTCTTGTAGCCTTGTACCGTAGCTTGTAGCAAGAAGAGATTCAC
GTTGACTTGACTCGAAACCCGTCCACCCAAATGACGCGCAAAGGCATCTG
GCTGTTCCTACAACAGTAGTAGCTTGGTGCGGTACGTTGACCTATTTTGC
GGGGTAATTCTAGAAGTAGTGACTCTTGTTCTACGGTAAATATGGTGAGG
GCTTGGTGAGAGATCAAAATTGACACCCGATGTTAGCTCCGCGTGGAGCG
ATAACGGCAGAGCTGGCCTGGCACATCTGCCTGCTGCGGTTTAGCGGGAC
GCTTTTGTTGAACTGCTGAGACTCAAGCCAACAGCAGTATATAGTGTGCT
GCTGCTGCTGCTGCTGCTGCGGCTGCTGCGGCTGCTGCGGCTGCTGCCAC
TGCTACGGCGGCCGCTACGGCTGCTGTTTTTTTGTGAATAGTCTAACGGT
ACATATTTGGCTCGTGCACAACCGGCCGCATAGCTGCATACTACTGTAGC
ACTTCCGAAAGGACGTAAATGCATCGGTCCCGTTTCCGGCCACGGAATTT
TTGTGTTGTTTAATTCATATGTTCGGGTGCAACCCCGCTCTGCACGCTTC
CGTTTTGAGTCTGCGTGGTATCAACCAACTCGTCTTTTTCTTTCGTGTGC
TGTATGCTATTCGTCGATCGTACATGTCCCGAGCACAGCAGCATCGCCCC
TTTTCAACGGCGCGTGACCCCCCCCCCCCGGCTCAAACAACGGCAGGTGT
AGACAGTAGAAAGCGACCCCGCTACGTGCCATGTCTTCCACAACGTACCG
GCAGCTTGTGCTGCGCCTCCCGGACGGCCTCAAGGAGACCATGAGAGACA
GGGTGGCGGCGGATGCGTCGCTAGACGGGGTGGACTTTACCCCGGAAAAG
AAAGGCAGCCGAAGGTGCGGGGTATTTAGTAAGGCCGGGACGAAATACGA
CTTGAACTCATATATTTCCACGTGTACATACGGCATGCGATGGAGGAGAG
AGGGCTGCCTGCTTATCTATAGTAAATAGTAGCTCCACGAGGCTTAAGGG
GGCATGTCGAGGGTACATGATAAAGTAGACGGGGAAAGGGTATGTATGTA
CGGGTGACTGCTTTGGGAGCGGCTTGGTTGTCCGGACAGCACGGCGCCAT
CCGCGTGCGCGCCGAGAGGTATACAGAGGTTGTTTTTGTTTGTTGCCGTA
CGTAACCCTGCCCGGCGCACGCTTCCAAGAAACCCACGTAAGAAGCACGA
CGCGTGCGCTGGCCTGTCGTAATTATACGCTCGGGTTTTCGATGGGCTCG
CTAAATTTGTCTGCGCTCTTCCAACGCTTGTGTTTTACCCAATGGCCCTC
CTTCTTTTCCTCGCCACGCGGTCTCCCGCGCTTTCACTCCCCGCCACCAC
ATTTTTGCCACACACACACACACACGTATGCACGTATGCACGACCTAACA
CACCAAAAGAGTAAAAAAACGTCCAGTTTTGTTGGTATTTTGGGGTCCCG
CAGTGTTTTCTCTTCGCGCAACACCCACCCTCCCCTCATCAACCGTCACC
CAGACCATCGCCACGAAAAAAAGCAAAGCAAGCAAAATAAGTCTACTAGA
CTATACCACACACATGCACGCACGTTTTGTTTATTTTAATTGTTCGTAGT
TATTGGTTCGTTTTTTTGATGTTTTAGGTTCACGTTCACGATGAACGGCA
AGAAGTACCCGGCCCGCTTGGTCGACATGCCGTGCATCTTGGAGTCTCAA
AAAACCCTGGACAAGAACACCTTCTTCAAGAGCGGGGACATCGGCCAGAT
GCTCATCGTCTACAAGGTATCTATCTGACAAGTCAGCATCTAGAGGAAAG
GTACTGCTGTGCGTAACTACAGGCAGGGTGGTTGATCTCCACAGGCCGAG
GAGGGAGGGGGGGGCGGGGAGAAGGAGGAAGAGGAGGGGCAGGAATCTGC
ATGCTCTGGATAATCTAGCGTTCCAAGCATTGGGGCAGAGAGGTTGGTTT
GAGAAAGGGTCGTCACCAGGCCTGATGAGTGTGGAACGGATGCAGCCACT
CTGTTTGTTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCCGCCTGCCTATCTCCTCCTTGTTTCTGGTGG
CGTTCGTTGCATATTTTGTTTTCGTTTTTTTCGTGAGGAAGGGGAGAGGG
GCTCGTTCAATGGGCCGCTGCTGCTGCTGCTGCCGACCGCCCGTAGGTTC
GAGGCAGCGCAGCGGTTGTGCGTGCGCACATGAATACAGACACACATATC
AGTTTTCGCCAAACAGGTACTTCGAAGTACATACATAAATAACAACGAGA
GAGCAAAAGCTCGACACCCGAGAGAAACACAACGCGTGCTGCAGGCATAC
GTATATGTACCAAAACCAAATCCCCAGCACCATCTCACCCCCCCCGCAAA
CCGCAAGTTGTGATCGAAGACGCTTGCGAGAGGTCCCCGCCCCCCAACCC
CCCACCCCCCCCTGCCCTGCTCGCTGAACCCCCGCACCTCCTCTCCCCGT
TGCCGCGACCAGGACGAGAGCGCCTACAGGAAAGACGACGGGAGCGCCAC
CGTGGTCGGGCCGCAGGAGCTCTACCCGGATGGCCTCACCCCGCCCACGA
AGAACATCGTGCGGAGACGCTTCGTAAAGGCGAGGCCCGACAAGGGGAAG
TTCGACCGCACAGAGGTGAGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1892:237..3360-

>mRNA_L-elsbetiae_contig1892.5558.1 ID=mRNA_L-elsbetiae_contig1892.5558.1|Name=mRNA_L-elsbetiae_contig1892.5558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1892:237..3360- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCCACAACGTACCGGCAGCTTGTGCTGCGCCTCCCGGACGGCCT
CAAGGAGACCATGAGAGACAGGGTGGCGGCGGATGCGTCGCTAGACGGGG
TGGACTTTACCCCGGAAAAGAAAGGCAGCCGAAGATGTCTTCCACAACGT
ACCGGCAGCTTGTGCTGCGCCTCCCGGACGGCCTCAAGGAGACCATGAGA
GACAGGGTGGCGGCGGATGCGTCGCTAGACGGGGTGGACTTTACCCCGGA
AAAGAAAGGCAGCCGAAGGTTCACGTTCACGATGAACGGCAAGAAGTACC
CGGCCCGCTTGGTCGACATGCCGTGCATCTTGGAGTCTCAAAAAACCCTG
GACAAGAACACCTTCTTCAAGAGCGGGGACATCGGCCAGATGCTCATCGT
CTACAAGGTTCACGTTCACGATGAACGGCAAGAAGTACCCGGCCCGCTTG
GTCGACATGCCGTGCATCTTGGAGTCTCAAAAAACCCTGGACAAGAACAC
CTTCTTCAAGAGCGGGGACATCGGCCAGATGCTCATCGTCTACAAGGACG
AGAGCGCCTACAGGAAAGACGACGGGAGCGCCACCGTGGTCGGGCCGCAG
GAGCTCTACCCGGATGGCCTCACCCCGCCCACGAAGAACATCGTGCGGAG
ACGCTTCGTAAAGGCGAGGCCCGACAAGGGGAAGTTCGACCGCACAGAGG
TGAGTTGAGACGAGAGCGCCTACAGGAAAGACGACGGGAGCGCCACCGTG
GTCGGGCCGCAGGAGCTCTACCCGGATGGCCTCACCCCGCCCACGAAGAA
CATCGTGCGGAGACGCTTCGTAAAGGCGAGGCCCGACAAGGGGAAGTTCG
ACCGCACAGAGGTGAGTTGA
back to top