mRNA_L-elsbetiae_contig18857.5536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18857.5536.1
Unique NamemRNA_L-elsbetiae_contig18857.5536.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A6H5LJ37_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJ37_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 9.770e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG
Sbjct:  361 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 450
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7S2Y4I1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4I1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.160e-50
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+HK+FDWA AS KGLLLFVDEADAFLRRR+ E ISEDLRNALNAFLYRTG
Sbjct:    1 GPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKLFDWANASNKGLLLFVDEADAFLRRRSVEHISEDLRNALNAFLYRTG 90
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BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A835YR91_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR91_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.810e-50
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHK+FDWAQAS KGLLLFVDEADAFLRRR+TE ISEDLRNALNAFLYRTG
Sbjct:  347 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKLFDWAQASNKGLLLFVDEADAFLRRRSTERISEDLRNALNAFLYRTG 436
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BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7S2WW12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW12_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.200e-49
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLARHSGLEYAI+TGGD+APLGRDAVTE+HKVF+WA AS +GLLLF+DE+DAFLR+R+TE +SEDLRNALNAFLYRTG
Sbjct:   13 GPPGTGKTLFAKGLARHSGLEYAILTGGDVAPLGRDAVTEIHKVFEWANASNRGLLLFIDESDAFLRKRSTEAMSEDLRNALNAFLYRTG 102
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BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: D7FW02_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW02_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.340e-48
Identity = 79/90 (87.78%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLARHSGL+YAI+TGGD+APLGR+AV+EMHK+FDWAQASR+G+LLFVDEADAFLRRR+TE ISED+RNALNAFLYRTG
Sbjct:  370 GPPGTGKTLFAKGLARHSGLDYAIITGGDVAPLGREAVSEMHKLFDWAQASRRGVLLFVDEADAFLRRRSTERISEDMRNALNAFLYRTG 459
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A8B7E5I4_HYDVU (ATPase family AAA domain-containing protein 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7E5I4_HYDVU)

HSP 1 Score: 157 bits (396), Expect = 9.080e-47
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKT+FAK LA HSGL+YAI+TGGD+AP+GRD VT MHKVFDWA  SR+GLLLFVDEADAFLRRR+TE ISEDLR+ LNAFLYRTG
Sbjct:   51 GPPGTGKTMFAKSLAYHSGLDYAILTGGDVAPMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRRRSTEHISEDLRSTLNAFLYRTG 140
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7S2D4S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4S5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.740e-46
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKT+FAKGLAR SGLEYAI+TGGD+APLGRDAVTE+HKVFDWA  S+KGLLLF+DE+DAFLR+R+TE ISEDLRNALNAFLYRTG
Sbjct:  279 GPPGTGKTMFAKGLARSSGLEYAILTGGDVAPLGRDAVTEIHKVFDWANTSKKGLLLFIDESDAFLRKRSTENISEDLRNALNAFLYRTG 368
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7S2ME04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME04_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.230e-46
Identity = 76/90 (84.44%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAKGLA+HSGLEYAI+TGGD+APLGRDAVTE+HKVFDWAQ SR+G+LLF+DE+DAFLR+R T+ +SEDLRNALNAFLYRTG
Sbjct:  341 GPPGTGKTLFAKGLAKHSGLEYAILTGGDVAPLGRDAVTEIHKVFDWAQTSRRGVLLFIDESDAFLRKRGTQQMSEDLRNALNAFLYRTG 430
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7R9ZQD9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQD9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.360e-46
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKT+FA+GLA HSGL+YA++TGGDIAPLGRDAVTE+HK+FDWA+ SR+GLLLFVDEADAFL+ R T TISED RNALNAFL+RTG
Sbjct:   25 GPPGTGKTMFARGLAHHSGLDYAVLTGGDIAPLGRDAVTELHKLFDWAKTSRRGLLLFVDEADAFLQSRETSTISEDQRNALNAFLFRTG 114
[Close]
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Match: A0A7S2BQU8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQU8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.710e-46
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQASRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG 270
            GPPGTGKTLFAK LA+HSGL+YAIMTGGD+APLGRD VTE+HKVF+WAQAS KGLLL +DEADAFLRRR+TE ISED+RNALNAFLYRTG
Sbjct:  314 GPPGTGKTLFAKSLAKHSGLDYAIMTGGDVAPLGRDGVTEIHKVFEWAQASNKGLLLLIDEADAFLRRRSTEVISEDMRNALNAFLYRTG 403
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18857.5536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJ37_9PHAE9.770e-53100.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2Y4I1_9STRA3.160e-5088.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YR91_9STRA4.810e-5095.56AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2WW12_9STRA1.200e-4985.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FW02_ECTSI5.340e-4887.78AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8B7E5I4_HYDVU9.080e-4782.22ATPase family AAA domain-containing protein 3-like... [more]
A0A7S2D4S5_9STRA1.740e-4685.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2ME04_9STRA2.230e-4684.44Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7R9ZQD9_9STRA2.360e-4681.11Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2BQU8_9STRA3.710e-4685.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18857contigL-elsbetiae_contig18857:2225..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D8LFV8
Preferred nameATAD3A
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010941,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0040008,GO:0042119,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0060548,GO:0065007,GO:0070820,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.4697068-CDS-L-elsbetiae_contig18857:2224..23711622815784.4697068-CDS-L-elsbetiae_contig18857:2224..2371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18857 2225..2371 +
1691683100.4511409-CDS-L-elsbetiae_contig18857:2224..23711691683100.4511409-CDS-L-elsbetiae_contig18857:2224..2371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18857 2225..2371 +
1622815784.4823394-CDS-L-elsbetiae_contig18857:2842..29651622815784.4823394-CDS-L-elsbetiae_contig18857:2842..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18857 2843..2965 +
1691683100.4632676-CDS-L-elsbetiae_contig18857:2842..29651691683100.4632676-CDS-L-elsbetiae_contig18857:2842..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18857 2843..2965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18857.5536.1prot_L-elsbetiae_contig18857.5536.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18857 2225..2965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18857.5536.1

>prot_L-elsbetiae_contig18857.5536.1 ID=prot_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
GPPGTGKTLFAKGLARHSGLEYAIMTGGDIAPLGRDAVTEMHKVFDWAQA
SRKGLLLFVDEADAFLRRRNTETISEDLRNALNAFLYRTG
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mRNA from alignment at L-elsbetiae_contig18857:2225..2965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18857.5536.1 ID=mRNA_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=741bp|location=Sequence derived from alignment at L-elsbetiae_contig18857:2225..2965+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCA
CTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTG
GGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAGGTA
TTGTACTATCTTATAGTACGGAGTCTCCGTTTTGTTTTTCGCCGTTTCCC
CGTGGAATGTATGTGTAGTCCGTGGATGGGTGTAGCGTATCGTTTTATTT
TTTGCTGCTTTTGCCCGTGAAATCTATGTAGTTTATGTAGCGTGATACGT
TTTGATTGTTTTGCGCTAAAATATGCGAATACCACGAGCAGAACATTGTA
CGTGGTGCTTAAAAATACGTTCCGTATCCCACGCTATGGTAGCATCACTT
GTACAACTTATTTTCCCTACCTTGATTTCCGTCTTGAGCCTTTTTTTTGT
GTGTTGACGGTTTGCATGTATACATACATATAGGCATGAACCGAAGACGG
AGTGTGTTTTGGGTTCTATTTTACTGAGAACTGAAGAGATTGACATTTAT
TTCTTTGTGCCTGCCTGCCCGTGCCCGTGCCCGTCTGTCTGTCCGTCTGT
CTGCCCGTCTATCTGTAGGCGAGCCGCAAGGGCCTTCTCTTGTTCGTCGA
CGAGGCGGACGCGTTCCTGCGGCGGCGCAACACGGAGACCATCAGCGAGG
ACCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCACGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18857:2225..2965+

>mRNA_L-elsbetiae_contig18857.5536.1 ID=mRNA_L-elsbetiae_contig18857.5536.1|Name=mRNA_L-elsbetiae_contig18857.5536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig18857:2225..2965+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCA
CTCGGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTG
GGAGGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAGGGA
CCACCGGGGACCGGTAAGACGCTCTTCGCCAAGGGCCTGGCACGCCACTC
GGGCCTGGAGTACGCCATCATGACTGGCGGCGATATCGCGCCCCTTGGGA
GGGACGCCGTGACGGAGATGCACAAGGTCTTCGACTGGGCTCAGGCGAGC
CGCAAGGGCCTTCTCTTGTTCGTCGACGAGGCGGACGCGTTCCTGCGGCG
GCGCAACACGGAGACCATCAGCGAGGACCTGCGCAACGCCCTGAACGCCT
TCCTCTACCGCACGGGAGCGAGCCGCAAGGGCCTTCTCTTGTTCGTCGAC
GAGGCGGACGCGTTCCTGCGGCGGCGCAACACGGAGACCATCAGCGAGGA
CCTGCGCAACGCCCTGAACGCCTTCCTCTACCGCACGGGA
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