mRNA_L-elsbetiae_contig18499.5378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18499.5378.1
Unique NamemRNA_L-elsbetiae_contig18499.5378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18499.5378.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.100e-40
Identity = 103/189 (54.50%), Postives = 111/189 (58.73%), Query Frame = 1 
Query:   16 FMDDRVRRRCRLHKLPGMIDVKSPKCEILVCPKQPCCGHLGAKARFCSEHKQNGMVNLKTRAFRCKHREELKPGEQEKGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGKNIMCNRACRYAFPNEPAVYCAMHSLEGMVDVLNPQCSMDNCLEIPTXXXXXXXXXXXXXXXGTGMQVM 582
            F  DRVRRRCRL                       CCGHLGAKARFCSEHKQ GMVNLKTRAFRCKHR E KP                XXXXXXXXXXXXXXXX               + + CNRACR+A+PNE AVYCA+H+LEGMVDVLNPQCSMD+CLEIPT               G GMQV+
Sbjct:  246 FKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRCKHRGEPKPX---------------XXXXXXXXXXXXXXXXTRNGKGAPPNKKKSRRAVTCNRACRFAYPNEMAVYCAVHALEGMVDVLNPQCSMDDCLEIPTYGFAGEQPTFCMVHSGPGMQVI 419
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BLAST of mRNA_L-elsbetiae_contig18499.5378.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.330e-27
Identity = 72/187 (38.50%), Postives = 84/187 (44.92%), Query Frame = 1 
Query:   25 DRVRRRCRLHKLPGMIDVKSPKCEILVCPKQPCCGHLGAKARFCSEHKQNGMVNLKTRAFRC----------------------KHREELKP---------GEQEKGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RGKNIMCNRACRYAFPNEPAVYCAMHSLEGMVDVLNPQC 486
            DR+RRRCRLHKL  M+DVKSP+CE+  C KQPCCG  G K RFCSEHKQ+GM+NLK    RC                      + R +  P         G     ++                                        GK   CNRACRYA+P E AVYC  H L GMVDV+NP C
Sbjct:  262 DRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYRRCLNTTTPPSPVFAIGVGFSSLAWQRRCKTSPPLGVCHRGIGFSSPANDVVKQANSLRELGNQTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSC 448
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BLAST of mRNA_L-elsbetiae_contig18499.5378.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.120e-25
Identity = 65/158 (41.14%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:   13 GFMDDRVRRRCRLHKLPGMIDVKSPKCEILVCPKQPCCGHLGAKARFCSEHKQNGMVNLKTRAFRCKHREELKPGEQEKGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGKNIMCNRACRYAFPNEPAVYCAMHSLEGMVDVLNPQC 486
            G+  DR+RRRCRLHKL  M+                 CG  G K RFCSEHKQ+GM+NLKTRAFRCK+R     G                                             GK   CNRACRYA+P E AVYC  H L GMVDV+NP C
Sbjct:  244 GYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGVAGLG----------------------------------IADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSC 367
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BLAST of mRNA_L-elsbetiae_contig18499.5378.1 vs. uniprot
Match: A0A835Z5G2_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.820e-6
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    7 SYGFMDDRVRRRCRLHKLPGMIDVKSPKCEILVCPKQPCCGHLGAKARF 153
            SYG+ DDR RRRC  HKL GM+ +K  KC +  C K    G +G  ARF
Sbjct:   27 SYGYEDDRKRRRCSQHKLDGMVYLKRRKCSMGACEKLSSYGRVGGSARF 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18499.5378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQ52_ECTSI7.100e-4054.50EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52... [more]
A0A6H5KYH5_9PHAE5.330e-2738.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMP7_ECTSI2.120e-2541.14EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835Z5G2_9STRA8.820e-651.02EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18499contigL-elsbetiae_contig18499:383..2588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue2.5e-34
Seed eggNOG ortholog2880.D7FQ52
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-01_007460.1
Exons3
Model size585
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18499.5378.1prot_L-elsbetiae_contig18499.5378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18499 383..2570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.488936-CDS-L-elsbetiae_contig18499:382..4781622815770.488936-CDS-L-elsbetiae_contig18499:382..478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 383..478 -
1691683091.049171-CDS-L-elsbetiae_contig18499:382..4781691683091.049171-CDS-L-elsbetiae_contig18499:382..478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 383..478 -
1622815770.5042026-CDS-L-elsbetiae_contig18499:1173..14701622815770.5042026-CDS-L-elsbetiae_contig18499:1173..1470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 1174..1470 -
1691683091.0640528-CDS-L-elsbetiae_contig18499:1173..14701691683091.0640528-CDS-L-elsbetiae_contig18499:1173..1470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 1174..1470 -
1622815770.515042-CDS-L-elsbetiae_contig18499:2396..25701622815770.515042-CDS-L-elsbetiae_contig18499:2396..2570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 2397..2570 -
1691683091.07193-CDS-L-elsbetiae_contig18499:2396..25701691683091.07193-CDS-L-elsbetiae_contig18499:2396..2570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18499 2397..2570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.5258486-UTR-L-elsbetiae_contig18499:2570..25881622815770.5258486-UTR-L-elsbetiae_contig18499:2570..2588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18499 2571..2588 -
1691683091.0806136-UTR-L-elsbetiae_contig18499:2570..25881691683091.0806136-UTR-L-elsbetiae_contig18499:2570..2588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18499 2571..2588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18499.5378.1

>prot_L-elsbetiae_contig18499.5378.1 ID=prot_L-elsbetiae_contig18499.5378.1|Name=mRNA_L-elsbetiae_contig18499.5378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MDDRVRRRCRLHKLPGMIDVKSPKCEILVCPKQPCCGHLGAKARFCSEHK
QNGMVNLKTRAFRCKHREELKPGEQEKGDEEEEDEEDEEAEEEKGRRARG
GGKSKKGKKVKKKRKKKRGKNIMCNRACRYAFPNEPAVYCAMHSLEGMVD
VLNPQCSMDNCLEIPTYGFPGEQPTFCMAHSGTGMQVM*
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mRNA from alignment at L-elsbetiae_contig18499:383..2588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18499.5378.1 ID=mRNA_L-elsbetiae_contig18499.5378.1|Name=mRNA_L-elsbetiae_contig18499.5378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2206bp|location=Sequence derived from alignment at L-elsbetiae_contig18499:383..2588- (Laminarionema elsbetiae ELsaHSoW15)
CATTCCAGCTACGGGTTCATGGACGACCGCGTGCGCCGGCGCTGCCGCCT
GCACAAGCTGCCCGGCATGATCGACGTCAAGAGCCCCAAGTGCGAGATCC
TCGTGTGCCCCAAGCAGCCGTGCTGCGGACACCTCGGCGCTAAGGCCAGG
TTCTGCTCGGAGCACAAGCAGAACGGCATGGTGAACCTCAAGGTAGGGTG
GGGAGGGTGTGGGATGAGGCATAGCTGTGGTTAGGTTGGGCAGGGTTTTG
GCGAAAGATGGAGTGGGCTGGTGTACGCTAGGGCGTTGCATGCCGTGCCG
TGCGGTGCTGTGCTGTGCTGTGCTGTGCTGTGCGATGCGACGTATATAAC
GCGGGGGATCTAGACGAAGCAGAAAGTAGTAATAGCGCGGCGTTGAAAGA
GAGAGTAAAAAAGTTGCGCAGATGGGGGGTGAGTCGGGGACCGGGATGAT
CCGATCCCGTCTGATTTTTTTGGGATGCGACAGACAGGCGGTTATGGCCT
GATTCTGCTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAA
TGCTAATGCTAATGCTAATGCTGCTGCTGCTGTTGTTGCTCCTGATGGTC
GTTTCGGTCTTTTGGTCTTGGTGGTCCTTGCCGTGCTGGTCGTCGTTGCT
CGGGCCTTCCCTTGCAGCACACGCGTGTTGTAGGCTGTGCCCCGTCGTGT
TGTTTTTGATTCGATTGTTTATGCTGGCCTTGCTCGAAGGACCCCTCTCC
CTGCACGCATTCCTACCATTTTTTTTGTCGCTTGTGTTGCGATGCTGCCT
GCGCTTTGCCCCCTACGAGCCTCTTGTGTTTATATTATATCGAGACCCTC
TGCGTTTGTAGATTCCGAAAGTACAGTTCATGCGTTTAGACCGTTTCCCC
TATTTTAGTTGAAACCACGGTGGTGTTGTTTCGGTTGAAATCCTATTCCT
GCTCAGCCCGACCAAACTCTCGCGCTTGTAAAAAATCGGGGTTGGAGTGT
CAACAATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTCTGCGCATGCCTCATTCCTTCCGTGCGCACGCCTCC
GTTGCTGTTGTTGTCAAGACTCGCGCGTTCCGCTGCAAGCACAGGGAGGA
GCTGAAGCCGGGCGAGCAGGAGAAGGGAGACGAGGAGGAGGAGGATGAGG
AAGATGAGGAGGCGGAAGAGGAGAAGGGGAGAAGGGCGAGGGGGGGAGGG
AAGAGCAAGAAGGGCAAGAAGGTCAAGAAGAAGAGGAAGAAAAAGAGGGG
GAAGAACATCATGTGCAACCGCGCGTGCCGCTACGCCTTCCCCAACGAGC
CGGCCGTATACTGCGCCATGCACTCCCTGGAGGGTATGGTGGATGTCCTC
AACCCGCAGTGCAGCGTGAGTGGTGGTGGTGGTAGTATTGTGGTGGTGTT
ATTGTAGTGGTGATTTAAGCTGTCACCAGTACGGTTGTGCGGCTGCTGTA
CGCTGCCGTATGTAAAGCTGTGTCTCCGTTGCGCCCAAAGATGTGCACAC
GCACAATCGGTGTTGGAACACAAAATAACCTTCCTCTCGAAAAAATCCAT
GGTTCCGGACGCGCTGGTGCGACGTGTGTTTCTGGGTTCCACGCCGTTGC
TTGGCTTCCTGCGCCCGGCATGTAATTTCTCTGCGGCGAAAGAGTGTGAA
CGAAAGCATGTGCATATGCATGTAGCTTCTGCCTTCTCGCGCGTACGGCG
TTTGCCAAGTCCCTATTGTAACGAAATCCCGTGTTTTCATCGAGAGCGAG
TTCATCGATTTAGATGCTGCTCACATCGAATAGAGCGCAACAACACCACC
CCTCGAGATCTCCGAGCAGAGCAGTCAAGCGCTGCGCCCTCGGCCTGTTG
CCGGCCGTTGTACATAGATATGTGTGGAGCGTGCGCTTTCCGGTGCTTTT
CCATTTATTTACAACACGGGGGATGAGATGTGGTTCAAGCGGCACGAGTT
GGACAGTTTGTCCCGTGGACATTATAACGTGTCTCCCCCTCTTGGCCTCT
AGTTGATCTCGTTGCTTGCCTGGCCTGGTCGACTCGGCGGTTCCGTTTGC
CCCGGCGCAGATGGATAACTGCCTCGAGATCCCCACGTACGGGTTCCCCG
GGGAGCAGCCGACCTTCTGCATGGCCCACAGCGGGACAGGGATGCAGGTG
ATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18499:383..2588-

>mRNA_L-elsbetiae_contig18499.5378.1 ID=mRNA_L-elsbetiae_contig18499.5378.1|Name=mRNA_L-elsbetiae_contig18499.5378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig18499:383..2588- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACCGCGTGCGCCGGCGCTGCCGCCTGCACAAGCTGCCCGGCAT
GATCGACGTCAAGAGCCCCAAGTGCGAGATCCTCGTGTGCCCCAAGCAGC
CGTGCTGCGGACACCTCGGCGCTAAGGCCAGGTTCTGCTCGGAGCACAAG
CAGAACGGCATGGTGAACCTCAAGATGGACGACCGCGTGCGCCGGCGCTG
CCGCCTGCACAAGCTGCCCGGCATGATCGACGTCAAGAGCCCCAAGTGCG
AGATCCTCGTGTGCCCCAAGCAGCCGTGCTGCGGACACCTCGGCGCTAAG
GCCAGGTTCTGCTCGGAGCACAAGCAGAACGGCATGGTGAACCTCAAGAC
TCGCGCGTTCCGCTGCAAGCACAGGGAGGAGCTGAAGCCGGGCGAGCAGG
AGAAGGGAGACGAGGAGGAGGAGGATGAGGAAGATGAGGAGGCGGAAGAG
GAGAAGGGGAGAAGGGCGAGGGGGGGAGGGAAGAGCAAGAAGGGCAAGAA
GGTCAAGAAGAAGAGGAAGAAAAAGAGGGGGAAGAACATCATGTGCAACC
GCGCGTGCCGCTACGCCTTCCCCAACGAGCCGGCCGTATACTGCGCCATG
CACTCCCTGGAGGGTATGGTGGATGTCCTCAACCCGCAGTGCAGCACTCG
CGCGTTCCGCTGCAAGCACAGGGAGGAGCTGAAGCCGGGCGAGCAGGAGA
AGGGAGACGAGGAGGAGGAGGATGAGGAAGATGAGGAGGCGGAAGAGGAG
AAGGGGAGAAGGGCGAGGGGGGGAGGGAAGAGCAAGAAGGGCAAGAAGGT
CAAGAAGAAGAGGAAGAAAAAGAGGGGGAAGAACATCATGTGCAACCGCG
CGTGCCGCTACGCCTTCCCCAACGAGCCGGCCGTATACTGCGCCATGCAC
TCCCTGGAGGGTATGGTGGATGTCCTCAACCCGCAGTGCAGCATGGATAA
CTGCCTCGAGATCCCCACGTACGGGTTCCCCGGGGAGCAGCCGACCTTCT
GCATGGCCCACAGCGGGACAGGGATGCAGGTGATGTGAATGGATAACTGC
CTCGAGATCCCCACGTACGGGTTCCCCGGGGAGCAGCCGACCTTCTGCAT
GGCCCACAGCGGGACAGGGATGCAGGTGATGTGA
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