mRNA_L-elsbetiae_contig1849.5372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE) HSP 1 Score: 112 bits (281), Expect = 7.650e-28 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 2 Query: 122 MPDKRGRQREGGGXXXXXXXXXXXSKKSKRVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475 M +KR R+REGG XXXXXXXXXXX + K VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA D EN+KLIA + QA ++ +VG Sbjct: 1 MSEKRSRRREGGXXXXXXXXXXXXXXEVK-VMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKQFQQTKFPREAANDAENLKLIAGSSTGQASQLGNSSVG 117
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.430e-25 Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 2 Query: 209 RVMDASGQTVEERRQLRLEQRNLRSVIIEQQANLGDLNKNTCRELTEENGKLFEQTNFPREAVTDGENMKLIAEGAAAQAKKVNTGAVG 475 +VMD SGQT EERR+LRL+QR L++ IIEQQA++GDLNK+ CRELTEENGK F+QT FPREA D EN+KLIA G+A QA ++ +VG Sbjct: 128 KVMDESGQTNEERRELRLKQRTLKNKIIEQQADIGDLNKDACRELTEENGKHFKQTKFPREAANDAENLKLIAVGSAGQACQLGNSSVG 216 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1849.5372.1 >prot_L-elsbetiae_contig1849.5372.1 ID=prot_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp DFVIDPFKGEETGTLTKEAKRAEHRRRGDINTNQQQQQHQHARQERAAAGback to top mRNA from alignment at L-elsbetiae_contig1849:2770..8957- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6188bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:2770..8957- >mRNA_L-elsbetiae_contig1849.5372.1 ID=mRNA_L-elsbetiae_contig1849.5372.1|Name=mRNA_L-elsbetiae_contig1849.5372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:2770..8957- (Laminarionema elsbetiae ELsaHSoW15)back to top |