mRNA_L-elsbetiae_contig10546.536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10546.536.1
Unique NamemRNA_L-elsbetiae_contig10546.536.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10546.536.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.630e-56
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 2 
Query:   26 RLVPAAAMTRSTRRLRKRLTAAGVEFKMPLDPAGDRRDAQADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGQMAVHGLFDFLLEACGHSMG 331
            RLVPAA MTRSTRRLRKRLTAAG+EF MPLDPAGD+RDAQADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRG MAVHGLFDFLLEACGHS G
Sbjct:  482 RLVPAALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTG 583
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BLAST of mRNA_L-elsbetiae_contig10546.536.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.520e-53
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 2 
Query:   26 RLVPAAAMTRSTRRLRKRLTAAGVEFKMPLDPAGDRRDAQA---DEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGQMAVHGLFDFLLEACGHSMG 331
            RLVPAA MTRSTRRLRKRLTAAG+EF MPLDPAGD+RDAQA   DEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRG MAVHGLFDFLLEACGHS G
Sbjct:  784 RLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQASHADEDVLEEWKAMDATGNAKPGAVYANEEDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTG 888
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10546.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXK2_ECTSI1.630e-5694.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K212_9PHAE1.520e-5391.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10546contigL-elsbetiae_contig10546:2877..6446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size334
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10546.536.1prot_L-elsbetiae_contig10546.536.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10546 2877..6446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.310008-CDS-L-elsbetiae_contig10546:2876..29751622815278.310008-CDS-L-elsbetiae_contig10546:2876..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 2877..2975 -
1691682812.8461432-CDS-L-elsbetiae_contig10546:2876..29751691682812.8461432-CDS-L-elsbetiae_contig10546:2876..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 2877..2975 -
1622815278.3222-CDS-L-elsbetiae_contig10546:4227..43161622815278.3222-CDS-L-elsbetiae_contig10546:4227..4316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 4228..4316 -
1691682812.8594124-CDS-L-elsbetiae_contig10546:4227..43161691682812.8594124-CDS-L-elsbetiae_contig10546:4227..4316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 4228..4316 -
1622815278.3324182-CDS-L-elsbetiae_contig10546:6301..64461622815278.3324182-CDS-L-elsbetiae_contig10546:6301..6446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 6302..6446 -
1691682812.8733075-CDS-L-elsbetiae_contig10546:6301..64461691682812.8733075-CDS-L-elsbetiae_contig10546:6301..6446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10546 6302..6446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10546.536.1

>prot_L-elsbetiae_contig10546.536.1 ID=prot_L-elsbetiae_contig10546.536.1|Name=mRNA_L-elsbetiae_contig10546.536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MCVVCSPVQAGSRGGDDPVDEAAAEAAHGRGGRVQDAARSGRRPSRRSGG
RGCARGVEGDGCHGKRQARRCLRQRRRQEPPTALSAHVPGTNGGSRPLRL
PSRSLRSFYGR
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mRNA from alignment at L-elsbetiae_contig10546:2877..6446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10546.536.1 ID=mRNA_L-elsbetiae_contig10546.536.1|Name=mRNA_L-elsbetiae_contig10546.536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3570bp|location=Sequence derived from alignment at L-elsbetiae_contig10546:2877..6446- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTTGTGTGTTCTCCTGTGCAGGCTGGTTCCCGCGGCGGCGATGA
CCCGGTCGACGAGGCGGCTGCGGAAGCGGCTCACGGCCGCGGGGGTCGAG
TTCAAGATGCCGCTCGATCCGGCCGGCGACCGTCGCGACGCTCAGGCAAG
GGAAGGGGGGGGGGGGCAGGGATACTTTTTTATTTATTTTCTTCCTCCCA
CTATTGGCTTTTTCGTCGTCTGTCTGCCCCACTGGCTGGCCCCCATATCC
ACTACGACTAGCTAGACGACCCAACCGGGGTCACGCAGAAGGGATACATA
CGGATACCTAAAAGGAAGCTGCACAAGTACACAGCTACGTATGTTCAATA
ATAACCTACACGGGTTTTTTACGCAGGCTACCTAACATAAGGGATAACGT
TTTGGAAACGGCTAAGAAAGCGGAGGGTCGGTTTGGTGTTAGAGATAGGG
TTAGGGGTATGGTTACGGAACCCCTGTCTCTGTCTCTATTTCCTGGATAA
AACTTAGTTCCTTCGCGAAGGTGGTCCTGAGGAAGGGGAGGTCGGGGGGG
CAGAAGAACAGGACACATGTGGATCCCCATCCAGCAGGCGTTTTTCGCGA
AAATTGATTGCGTTTTAACCCTCCTGTGGAACGGAACGATGCTTCGCCCG
GCTGATGCTTCAAGCCAAATTTTTCTGTGTAAATAGACTATGGATGCGGA
CTGAGTTAGTGCCAGATCAGTTGTATCCAGAAAAGATCGGAACGAAACAC
ACGAAGATTGATTGTGGCTCCACACTATTTGTCTTTTTCGATTGTTATCG
TTTTGCTGACCCTTCTTCGGGTCTATTTTCTTTTCGTGTAACGAAGTATA
TACCTTTTTTTAGGTATAAGTTAAACTAGCCTGTGACCACGGGAGTTGAC
CGCATCAAGTGTCAGACTGTACGGGCACGCCTGAACCCTTCTCGCGGTGA
AAACAGTAGGCAAGCACCGCAGACGGGGGGGAGTGGGGGCCTTGGGGAAA
GGAACCCCTCTGTGTGACCACGGTTCAGTACTCTGGACAGAGCCCATCGA
GCACTGGAAATTAATGTGAAAAAGAAGAAAAAAAAAAGAAGGGAGGTACT
GGGTGGAGAAATCGGAACGGTTTTTAATGTGAAGAACCAACAACAAGGCA
GGCGTCGGCTCTCACCCTCGGTTCCCGTTTTTGTGCCCCGGGCTGCTCCG
GCGGAGTGCTATGGCATGTATGTACTGCTACTATACACTCCTTTTCGTGG
GAGGGACATTTATTTGCGTGTGTCTGTGATGGAGATTGTCTCTGGGCTTT
GTTTCGTGTACCTTTTCTTGGGTATAATTTAGCCTGTGACCACGGGAATT
GACCGCATCAAGTATTGGATTAGTACGAACATTGAGAGGTACTGGATGGA
GAGATCGGAACGGTTTTTAATGTGAAGACAACATACATACATACATACAT
ACATACATACATACATACATACATTTGGAGCGGGGCAGGTACGTAGGTCC
AGGCACGGCGGGGCGGTACGTTTGTGGCGTGTGTTGCTTCGGCAGCGCCA
AGAACCGATATAAAAAGTTTAAAACATTGCTGCCACCGCCGCCACCACCG
CCGCCACCAACAACACCACCACCAACAACACCATCACCAACAACACCAAC
AACAACAACAACAACAACAACCACCACCAACCACAACAAACAACCACAAC
AACAACAACAACAACACCAACAACGACAACAACCACCACAACCACAACCA
CAACAACAGCAACAACGCCGCCGCCACCACCACCACCACCACCACCAGGA
ACAACAACAGCACCAACAGGGCGAAGTGACTTTCAGGTGGAACAGCTGCC
GTCCGGGGCACGCACAGATCGATCCTTCACATCATACACACCAGTACACA
CACATACGCCCCCCCAAGAATGTTTTGGACTAGAGAGAGCTAGATGTGAG
AAACAAGAAGAACATGCCACTCGTACTCGATCTACGGAGTGCCAAAATGT
GTGCACTCTCACAATATTTCATGTTGGAAGCAGGGTGGGTGCCCATGAGT
CCCACCCGTTTTTGTCTGGGGGCCAACCGGTTTGCGTTCCTGCGTATGTT
ATGTATGGTACCGCTGGATGTCGTACCCAGGCGGACGAGGATGTGCTAGA
GGAGTGGAAGGCGATGGATGCCACGGGAAACGCCAAGCCCGGCGCTGTTT
ACGCCAACGAAGAAGACAGGTGCGTCCGGCATCCTCGGTTCTAGTATGTA
TGTAGTTATGCATGTCTGTGTGTACCAACTGCCGACCCCCCCGTGAGTTG
CGCTTGGTACTGTTTGTTTCTGCTTGCAAGTAGAGTCATGTAGTACCGTA
GGTGACACAAGATACCACATCCCCTGTACAGACTTTTAGACCTCCGTTAC
TCCGTAACGAAGAGGGTGCCAGCACCAAACGGCACATTTTCGGACAGCCC
TCGACTAGATCTTTCCAACGCCACCCCCTTTCGGCACCAGCACCCTTCTT
GCTGGGGAGGAATCGAGCTTTGAAACTGCAGGGGGTGTGGTATCTTGTGT
CACATACGGTAGTTATTTCTTCCCGGTGTACATGTCTGCATCGTATTCGT
ACCAAGGCGTGTTTGATCAGGTCTCGCTCTTCTCAAGCCAATAACATACC
GTAAATCCTCTTGGGTTAGCCCCCCGCCACGGTTAGCAGCCCCTACCGGG
GTCTACATACATACTCCGAGTACATATATAAATGCTACGCACAACACACG
CCAAAACGAAGAAGACAGGTTGGAACGTTTTGTTTGGTTCTAGAAGGAGT
TCTCTTAAAAGACGGTATATGTGTGGGTATCCGTGAGAAAAAACAAAATA
AGATAAAAGGTGGTTCTGAAATGGTTTTGAAGGGGTTCTCAGGTTTTGTT
TGGTTCTAAAAGGAGTTCTTAAAAGACGGCATATGTGTGGGTATCCGTAA
GAACAAGCGAAATAAAAGGTGGTTCTGAAATGGTTTTGAAGTGGTTCTCA
GGTGATCCTTTTCATGTCTACGCGCCGCCTGCGCCTGCCGACGAAGATGT
GTAGCTCAATATCAGGACGGCGGGGCTTCCTGTGTCGCCGAACAAACGGG
GGGGGGCAAAGTAGTTAGTACTTGCTGCCTGCTTTTTCCTCAGGCTCTCA
GAAGAAAGCCGTCGGATCCTCATTCGTTTCTTGGAGTTGACCCCCTCGTT
TCTGGCCAGGTGCCGCTGTGCACGCACGCATGCATGCATGCATGCATGCA
TGCGTCGCCGTATGTATCATGCGGGGGGAAACAAATATACGATGTCGGAG
TTCTACCGCACGCAGAACGGGTGCGTGCACAAGTGTCGAAAACTCTCCGA
CGGCGCCGTTTCTATTGCTGTATTGTAGGCCTGCGCTCCTGCGTTGAAAA
CGGCTTGACGCTCATCCCCCCCGCCCCCCTCCCGGCGCAACGCATGATAC
CCTGTGCCCCCCCCCCCCCAGGAGCCGCCCACAGCTCTCTCTGCTCACGT
TCCGGGGACAAATGGCGGTTCACGGCCTCTTCGACTTCCTTCTAGAAGCT
TGCGGTCATTCTATGGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10546:2877..6446-

>mRNA_L-elsbetiae_contig10546.536.1 ID=mRNA_L-elsbetiae_contig10546.536.1|Name=mRNA_L-elsbetiae_contig10546.536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig10546:2877..6446- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTTGTGTGTTCTCCTGTGCAGGCTGGTTCCCGCGGCGGCGATGA
CCCGGTCGACGAGGCGGCTGCGGAAGCGGCTCACGGCCGCGGGGGTCGAG
TTCAAGATGCCGCTCGATCCGGCCGGCGACCGTCGCGACGCTCAGATGTG
CGTTGTGTGTTCTCCTGTGCAGGCTGGTTCCCGCGGCGGCGATGACCCGG
TCGACGAGGCGGCTGCGGAAGCGGCTCACGGCCGCGGGGGTCGAGTTCAA
GATGCCGCTCGATCCGGCCGGCGACCGTCGCGACGCTCAGGCGGACGAGG
ATGTGCTAGAGGAGTGGAAGGCGATGGATGCCACGGGAAACGCCAAGCCC
GGCGCTGTTTACGCCAACGAAGAAGACAGGCGGACGAGGATGTGCTAGAG
GAGTGGAAGGCGATGGATGCCACGGGAAACGCCAAGCCCGGCGCTGTTTA
CGCCAACGAAGAAGACAGGAGCCGCCCACAGCTCTCTCTGCTCACGTTCC
GGGGACAAATGGCGGTTCACGGCCTCTTCGACTTCCTTCTAGAAGCTTGC
GGTCATTCTATGGGCGGGAGCCGCCCACAGCTCTCTCTGCTCACGTTCCG
GGGACAAATGGCGGTTCACGGCCTCTTCGACTTCCTTCTAGAAGCTTGCG
GTCATTCTATGGGCGG
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