mRNA_L-elsbetiae_contig1833.5311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1833.5311.1
Unique NamemRNA_L-elsbetiae_contig1833.5311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: D7FP09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP09_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 3.240e-56
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  127 MGGAPSKVYHGSNLDVIPEGQATERATVWQKEGYHDDYTKSPILPDDRDDITEYVELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ 447
            MGGAPS+V+  S L  +PE +ATE ATVW+KEGYHDD+TKSPILPDDR+DITEYVELLAMLHSP GQNFLG+FSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ
Sbjct:    1 MGGAPSRVHQSSTLGEVPESRATEHATVWRKEGYHDDFTKSPILPDDREDITEYVELLAMLHSPVGQNFLGRFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ 107
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BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: A0A835ZAC1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-7
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  238 YTKSPILPDDRDDITEYVELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYR 429
            + K   LP   D   E++EL  +L  P GQ ++G F+ +  T    FAW++IQEYR+IPT DY+
Sbjct:    5 FEKDGTLPAGVDSDPEHMELRTILEDPVGQKYIGAFAKKTLTHESFFAWTEIQEYRSIPTADYQ 68
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BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: D8LEF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-6
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  289 VELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKA 441
            +E+ A+L  P GQ ++G+F+ ++ TQ   +AW DIQE+R+IPT DYR  K+
Sbjct:   19 LEMRAILEDPIGQKYIGQFAKKVMTQESFYAWVDIQEFRSIPTGDYRRGKS 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP09_ECTSI3.240e-5685.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAC1_9STRA1.440e-742.19Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LEF7_ECTSI1.230e-647.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1833contigL-elsbetiae_contig1833:1381..4351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue2.1e-47
Seed eggNOG ortholog2880.D7FP09
KEGG koko:K00910,ko:K04688
KEGG Pathwayko01521,ko01522,ko04012,ko04062,ko04066,ko04140,ko04144,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04340,ko04350,ko04371,ko04666,ko04714,ko04724,ko04740,ko04745,ko04910,ko04931,ko05032,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04062,map04066,map04140,map04144,map04150,map04151,map04152,map04211,map04212,map04213,map04340,map04350,map04371,map04666,map04714,map04724,map04740,map04745,map04910,map04931,map05032,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0598@1,KOG0598@2759
EC2.7.11.1,2.7.11.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04147
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-05_001850.1
Exons3
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1833.5311.1prot_L-elsbetiae_contig1833.5311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1833 1381..4351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.2609522-CDS-L-elsbetiae_contig1833:1380..15081622815764.2609522-CDS-L-elsbetiae_contig1833:1380..1508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 1381..1508 -
1691683087.233345-CDS-L-elsbetiae_contig1833:1380..15081691683087.233345-CDS-L-elsbetiae_contig1833:1380..1508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 1381..1508 -
1622815764.2712607-CDS-L-elsbetiae_contig1833:2152..23101622815764.2712607-CDS-L-elsbetiae_contig1833:2152..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 2153..2310 -
1691683087.2436225-CDS-L-elsbetiae_contig1833:2152..23101691683087.2436225-CDS-L-elsbetiae_contig1833:2152..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 2153..2310 -
1622815764.2820034-CDS-L-elsbetiae_contig1833:4190..43511622815764.2820034-CDS-L-elsbetiae_contig1833:4190..4351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 4191..4351 -
1691683087.25491-CDS-L-elsbetiae_contig1833:4190..43511691683087.25491-CDS-L-elsbetiae_contig1833:4190..4351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1833 4191..4351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1833.5311.1

>prot_L-elsbetiae_contig1833.5311.1 ID=prot_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
PVGYGKRLHPFARRGTFAEHFLVESRGRVASHTPAVTARGRDMGGAPSKV
YHGSNLDVIPEGQATERATVWQKEGYHDDYTKSPILPDDRDDITEYVELL
AMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ
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mRNA from alignment at L-elsbetiae_contig1833:1381..4351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1833.5311.1 ID=mRNA_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2971bp|location=Sequence derived from alignment at L-elsbetiae_contig1833:1381..4351- (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGACGAGGGACGTT
TGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGCTTCTCATACAC
CAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCACCAAGCAAGGTT
TACCACGGAAGGTGAGAGCAGGCGTTGTTAGTAAATCAGCTTTTGTAGGG
TCCATCCGGTGCGGGCCCCGGATTTAAGTCGCCTTTGAACGCAACCACAA
GAGGCATGTGACTTGAGGGTGTAGAAGAAGCAACAGCTTGGGAGTGGGAC
AGCTTTGTTGCCCAATCGAGAGACCAACCCGCTCCCTCTTTTGGTCCGCT
CGCCATTGTTGTAACAAAACCGAGATGGATCTCAACGCGAGGGGCTTACG
TTTCCCGTGGGTACAATAAAGCACTTGTGACGGATTTTCGTACACAGCAG
GAAGGCGGGTTCGTTTGCCCCCGTGGTTTTCCCAGAAATACAATGCGGAA
CCTGAGGCTCATCGCACGATCTCTCAACACATATCTACACGTGCAAGTGC
CAACAGAGTGGCAGTGACGAAATACGGTTAACGATGAAAGATGTTGTCAT
CACTTCCGGCGGATAATACTTTATTTGAGCGTCCGGTACACAGTTGCCGA
AGAACCACTCGGGCAGAACGACCGGCTACCACCGGGAAGGCTCGTGTCTT
GAAACCTTGGTCGGAACGGCACAGCTGACCTATGTAGGGGCGCTATCTGC
GCGTTGGCTGGCTTGACACCCGTCTTTGTTTCCGGCGCTGGCTAAGGATA
AAAAGATACTTCTATATATCTATCTATCTAATGCAAAACAGCTCGCTTCT
GCCTTTCCGTTCGTGTTGCCCATCGATCGGGGATCACTCCCGAGGGAAGC
GGAGGCGGTCCAGGTTTTCACACAAAAAGAAACATGTTATCGGACCCCTC
CCTCTCAAGACGGGCTTTCTTAGCAGTGCGCCTCCTTCGACAAGCGAAGT
AACTCAATATATTTACCATGCCACATTTATTTTCACACAAGGGTGTATGT
ACTGTAGGCCAGTGGGAGCCTTGCAGCAAGATGACAGCACCAAATCCGAG
ATTTCCATGCTGTTAAAGATGAGCAGTACGGTTGGTAGATACCAGAGAAC
GAGCGGATGAACGCCCATACGAACAGGTGCAGCCGTTGCTGCTGACGGTT
TTGCTAGGGCCACAAAGCTCGGGATTGTTTTCTGGGACCAAACTATAGAA
AGGGGGCCATCTTCCGATGCTGCACAGACAGAGCAGAGCGGCGGGGCACC
TGGTGGTGTCGCGGAACCTTTGCCACTTTCACCAAGGCTAATCACTCACC
CCCGCCCATTCGCCTACCGACTCCACCAAGAACGAGTTGGTCATTCTACG
GCCCATTTAAACACTCGCACGCCTGCTTGGTTTGTTTGTTTGTTTGTTTG
TATTTTCGGCTTGTTTACTGTCCGATGTCCTTTTTTTCCCTCTTGCTGTG
ATCATATGTGCGGTGCAATGGGTGGGGAGGACTAGATTGGTGGGCCTGAC
CCGCAAGAACCGGGCGTGGAATGCCCCGCCGTTGTTGGGGTACCAGGATA
GAACCAGGGGGGTGTATTCCCCCCGCGGTTGGGGAAATCGGCTTTTTTCC
ACTCTTGTCACCACCTCCCATAGCGTGCAGAGGGGCGGAGGACTCCAGAC
CATTTTCGTCTAATCGTTTGTTTTTTGTGCTTTGTGGACCCTTTGGGTCC
ATTTTATTTCATTTTTTTTCAGCATATTTAGTATTATACCCCGTCTAGAA
GGTAAGTTATCCTGTGGCCACGGGAATCGACTGCGTCAGTGTTGGGATCA
GTACGGACTCAGGTTAGTACGGACTCATGGAGGTAAATCGGAACGGTTAC
TAATGTGAAGACAACAACAACAACAACAACAGCAACAGCAACAACAGCAA
CAACAACAACAACAACAACAACGACAAAAACAACAACAACAACAACGACA
ACAACCGTATGCCCGCCTCTTCTGCTGCGTGGCCTACCCAGTAACCTGGA
TGTAATACCCGAAGGCCAGGCGACGGAGCGCGCGACAGTGTGGCAGAAGG
AGGGCTACCACGACGACTACACGAAGAGCCCTATTTTGCCGGACGACCGA
GACGATATCACGGAGTACGTCGAGCTTCTGGCGATGCTGCACAGCCCTGG
TGAGTGTTGTCTCTGTCTAAGAGAGACGGAACTCTGGTTGCTCTCACCTC
GATTTCTTGCGGGTCAGATGAGGCACCCGCTTCATTTGTGTACAATATAC
ATGCCGTGGATATGCGCTCGAACCTCATTGCTGCTGTTTTTTTGGCATTG
CCAGAGAGGATGCATGCCGAAAACAGTTTTAGGAAAGTTGGCTTGGCGAT
GTGCGCCTCAAATGTTTCCAAACGACACGACCCTCGTACGACCAAGGCAT
ATATCTCTGCAGAGGGGTTAACTAACAGTCATCCCATCAGAGCCATATTT
CGCAGAGCCTACAGGCATATAGACACGCTCTCTTTGGGTGCCACCGGTGT
TGCTGTTGCGTGCTATGTAGGGATTCGCCTTGCACTTGGCGTTTCATATT
TCACCGGCTCACATTTCTTCCGTGAAATCCAAGGGAAGAAGAGAGAACAA
GACCGCACACCTTGCATCGGCAAAGCGCGGAGAGCATCCAAGTTTTTCCC
CGCCAGATGCCGAAAGCATCGCCCCTCTCAAGTGCTGCCAGTTCCTCCCC
ACAGACGAAAGCGTAGCCCAAACTTCCTCCATCGAAGCGTCCCGAACACG
AATATACCTGTCCCGCTTAAATCTTGAAACCCTGTATTTTCAGCCGGCCA
GAATTTTCTCGGAAAGTTCTCCATGGAGATCGGGACGCAGCACGTTCTCT
TCGCATGGAGCGACATCCAGGAGTACCGGGCTATCCCGACGGTGGACTAC
CGTTTCACCAAGGCCAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1833:1381..4351-

>mRNA_L-elsbetiae_contig1833.5311.1 ID=mRNA_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1833:1381..4351- (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGACGAGGGACGTT
TGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGCTTCTCATACAC
CAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCACCAAGCAAGGTT
TACCACGGAAGCCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGA
CGAGGGACGTTTGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGC
TTCTCATACACCAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCAC
CAAGCAAGGTTTACCACGGAAGTAACCTGGATGTAATACCCGAAGGCCAG
GCGACGGAGCGCGCGACAGTGTGGCAGAAGGAGGGCTACCACGACGACTA
CACGAAGAGCCCTATTTTGCCGGACGACCGAGACGATATCACGGAGTACG
TCGAGCTTCTGGCGATGCTGCACAGCCCTGTAACCTGGATGTAATACCCG
AAGGCCAGGCGACGGAGCGCGCGACAGTGTGGCAGAAGGAGGGCTACCAC
GACGACTACACGAAGAGCCCTATTTTGCCGGACGACCGAGACGATATCAC
GGAGTACGTCGAGCTTCTGGCGATGCTGCACAGCCCTGCCGGCCAGAATT
TTCTCGGAAAGTTCTCCATGGAGATCGGGACGCAGCACGTTCTCTTCGCA
TGGAGCGACATCCAGGAGTACCGGGCTATCCCGACGGTGGACTACCGTTT
CACCAAGGCCAAGCAGCCGGCCAGAATTTTCTCGGAAAGTTCTCCATGGA
GATCGGGACGCAGCACGTTCTCTTCGCATGGAGCGACATCCAGGAGTACC
GGGCTATCCCGACGGTGGACTACCGTTTCACCAAGGCCAAGCAG
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