mRNA_L-elsbetiae_contig1832.5309.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1832.5309.1 vs. uniprot
Match: D7G3G2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G2_ECTSI) HSP 1 Score: 297 bits (761), Expect = 9.230e-80 Identity = 193/321 (60.12%), Postives = 215/321 (66.98%), Query Frame = 3 Query: 1752 WREPEYWGG--------PGYHAWGGAMMP-EQHGLGSPPVSVSKRHLLPWPIEKIEEMEAMGAGGRAGEDDETWVRIAAAMSSSVSEAKDQWASYCEMMRHKRWMSGSGSSGRAQMPVAAXXXXXXXXXS-----WAAGEHSAAWRYRAEXXXXXXXXXXXXXXX-----------PGTGAYSRGPSAYSSPPPGPIAAASGRPASVIGRCAYCGEMWNTNSPTAALAIQAGRWCCPACESGAQPGPMPRHWEDEEGYIAMPRVMPGHHPYYSAEAXXXXXXXXXXXXAGEPPFHGRTPPGGWPERGRPQQHVVGVGRGHG 2639 W E EYWGG PGY WGG M+P EQH L PP SVS+RHLLPWP+EKIEEMEAMGAG R GEDDE WVRIAA MSS+++EAKDQWA+YCEMMRH+RWMSGS XXXXXXX WAA +H ++WRYR+E XXXXXXXXX P G Y + YS P + R +SV+GRC++CGE W+T+SP AA AI+AGRWCCPACESG QPGPMPRHWEDE+GYIAMPRVMPG HPYYS EA XXXXXXXXXXX R PP W ERGRP VGR HG Sbjct: 635 WSEHEYWGGHEPGGAVPPGYQRWGGMMVPPEQHDLAGPP-SVSRRHLLPWPLEKIEEMEAMGAG-RGGEDDEDWVRIAARMSSTIAEAKDQWAAYCEMMRHQRWMSGSSXXXXXXXXXXXXXXXXXXGAPPGPARWAAEQHPSSWRYRSEPTGASAXXXXXXXXXXXXXXXXXRPPPEAGPYRQSVQGYSVAPGAGPSPPPARSSSVVGRCSFCGEAWSTDSPAAAAAIKAGRWCCPACESGTQPGPMPRHWEDEDGYIAMPRVMPGQHPYYSVEAAXXXXXXXXXXX-----XXXRHPPAAWAERGRPPT----VGRMHG 944
BLAST of mRNA_L-elsbetiae_contig1832.5309.1 vs. uniprot
Match: A0A6H5JT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT89_9PHAE) HSP 1 Score: 296 bits (759), Expect = 1.610e-79 Identity = 187/344 (54.36%), Postives = 213/344 (61.92%), Query Frame = 3 Query: 1668 RGIRPSSVGGA-WQVSAGPPHGPPHGGAGWREPEYWGG--------PGYHAWGGA-MMP-EQHGLGSPPVSVSKRHLLPWPIEKIEEMEAMGAGGRAGEDDETWVRIAAAMSSSVSEAKDQWASYCEMMRHKRWMSGSGSSGRAQMPVAAXXXXXXXXXS-----WAAGEHSAAWRYRAEXXXXXXXXXXXXXXX-----------PGTGAYSRGPSAYSSPPPGPIAAASGRPASVIGRCAYCGEMWNTNSPTAALAIQAGRWCCPACESGAQPGPMPRHWEDEEGYIAMPRVMPGHHPYYSAEAXXXXXXXXXXXXAGEPPFHGRTPPGGWPERGRPQQHVV 2618 RG PSS GG W S+ GG W E +YWGG PGY WGG M+P EQH L PP SVS+RHLLPWP+EKI+EMEAMGAG R GEDD+ WVRIAA MSS+++EAKDQWA+YCEMMRH+RWMSGS S+ XXXXXXX WAA +H + WRYR+E P G Y R P YS P + S RP+SV+GRC++CGE W+T+SP AA AI+AGRWCCPACESG QPGPMPRHWEDE+GYIAMPRVMPG HPYYS EA XXXX G GR PP W ERGR H + Sbjct: 610 RGRPPSSGGGPPWDASSAVERPLAGGGGRWSE-QYWGGHEPRGAMPPGYQRWGGTTMVPREQHDLAGPP-SVSRRHLLPWPLEKIKEMEAMGAG-RGGEDDDAWVRIAARMSSTIAEAKDQWAAYCEMMRHERWMSGSSSAXXXXXXXXXXXXXXXXGAPPGPARWAAEQHPS-WRYRSEPTGVSAAAAAAAGYPGGMPPRSRLPPPEAGPY-RQPVGYSVAPGAGPSPPSARPSSVVGRCSFCGEAWSTDSPAAAAAIKAGRWCCPACESGTQPGPMPRHWEDEDGYIAMPRVMPGQHPYYSVEAAAASXXXXEAAIRG-----GRHPPAAWVERGRADAHYL 943
BLAST of mRNA_L-elsbetiae_contig1832.5309.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 1.230e-8 Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 3 Query: 123 TTPRLRKSCDPCSLAKRRCDGQPQCSLCRKKGLPCVYGERQKSGPKGRK 269 +T ++R+SCD C+LAKRRCDG+ +CSLC KK + CVY RQKSGPKG K Sbjct: 20 STLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKGHK 68
BLAST of mRNA_L-elsbetiae_contig1832.5309.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 6.850e-8 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3 Query: 123 TTPRLRKSCDPCSLAKRRCDGQPQCSLCRKKGLPCVYGERQKSGPKGRK 269 +T ++R+SCD C+LAKRRCDG+ +C LC KK + CVY RQKSGPKG K Sbjct: 20 STLKMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKGHK 68 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1832.5309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1832.5309.1 >prot_L-elsbetiae_contig1832.5309.1 ID=prot_L-elsbetiae_contig1832.5309.1|Name=mRNA_L-elsbetiae_contig1832.5309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1041bp MEPEPTAGPRRAPGGRRERNVSTTPRLRKSCDPCSLAKRRCDGQPQCSLCback to top mRNA from alignment at L-elsbetiae_contig1832:1380..10472- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1832.5309.1 ID=mRNA_L-elsbetiae_contig1832.5309.1|Name=mRNA_L-elsbetiae_contig1832.5309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9093bp|location=Sequence derived from alignment at L-elsbetiae_contig1832:1380..10472- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1832:1380..10472- >mRNA_L-elsbetiae_contig1832.5309.1 ID=mRNA_L-elsbetiae_contig1832.5309.1|Name=mRNA_L-elsbetiae_contig1832.5309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6246bp|location=Sequence derived from alignment at L-elsbetiae_contig1832:1380..10472- (Laminarionema elsbetiae ELsaHSoW15)back to top |