mRNA_L-elsbetiae_contig10541.531.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10541.531.1
Unique NamemRNA_L-elsbetiae_contig10541.531.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10541.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10541contigL-elsbetiae_contig10541:1049..1618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10541.531.1prot_L-elsbetiae_contig10541.531.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10541 1186..1512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.9151962-UTR-L-elsbetiae_contig10541:1048..11851622815277.9151962-UTR-L-elsbetiae_contig10541:1048..1185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10541 1049..1185 +
1691682812.6033967-UTR-L-elsbetiae_contig10541:1048..11851691682812.6033967-UTR-L-elsbetiae_contig10541:1048..1185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10541 1049..1185 +
1622815277.9456975-UTR-L-elsbetiae_contig10541:1512..16181622815277.9456975-UTR-L-elsbetiae_contig10541:1512..1618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10541 1513..1618 +
1691682812.6250138-UTR-L-elsbetiae_contig10541:1512..16181691682812.6250138-UTR-L-elsbetiae_contig10541:1512..1618Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10541 1513..1618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.9325583-CDS-L-elsbetiae_contig10541:1185..15121622815277.9325583-CDS-L-elsbetiae_contig10541:1185..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10541 1186..1512 +
1691682812.6145592-CDS-L-elsbetiae_contig10541:1185..15121691682812.6145592-CDS-L-elsbetiae_contig10541:1185..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10541 1186..1512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10541.531.1

>prot_L-elsbetiae_contig10541.531.1 ID=prot_L-elsbetiae_contig10541.531.1|Name=mRNA_L-elsbetiae_contig10541.531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MVLFICCSSPNVAHLIILTDGAQTHFSWNRYVSACCPPPSLHIRACLIWH
PHHQVEGLNKDREVHLLRDRLESTVVGGLNAFPPMQTAPVHGAVYLLFES
RRIPPYSD*
back to top

mRNA from alignment at L-elsbetiae_contig10541:1049..1618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10541.531.1 ID=mRNA_L-elsbetiae_contig10541.531.1|Name=mRNA_L-elsbetiae_contig10541.531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig10541:1049..1618+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCCGGCGTAGGAACCACTCGAGAGCGCGGTCGCGAGAACAACTCATTG
CGAGCCTACGCCAGCAGCTGCTCGACCAGTCGGTAGGTTGATCTCCTGGC
AAAGTGATGCTCGGGTCTCGGCAGACCGCACCTATTCATGGTGCTGTTTA
TCTGCTGTTCGAGTCCCAACGTAGCCCACCTTATTATACTGACTGATGGT
GCCCAAACTCATTTCTCTTGGAATAGATATGTCTCTGCTTGCTGCCCACC
CCCATCTCTCCACATCCGTGCATGTCTTATATGGCACCCCCATCACCAGG
TCGAGGGGCTCAACAAAGACCGTGAGGTCCACCTGCTCCGCGACAGGCTA
GAATCAACGGTGGTAGGTGGCCTGAACGCGTTCCCGCCGATGCAGACCGC
ACCTGTTCATGGTGCTGTTTATCTGCTGTTCGAGTCCCGACGTATTCCAC
CTTATTCTGACTGATGGTGCCAAAACTTAATTCTCTTGGAATAGATACGT
CTCTGCTTGCTGCCTGCCCCGTCTCTCCGCACCCGTGCATGTCTGATATG
GCACCCCCCATCACCAGGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10541:1049..1618+

>mRNA_L-elsbetiae_contig10541.531.1 ID=mRNA_L-elsbetiae_contig10541.531.1|Name=mRNA_L-elsbetiae_contig10541.531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig10541:1049..1618+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGTTTATCTGCTGTTCGAGTCCCAACGTAGCCCACCTTATTAT
ACTGACTGATGGTGCCCAAACTCATTTCTCTTGGAATAGATATGTCTCTG
CTTGCTGCCCACCCCCATCTCTCCACATCCGTGCATGTCTTATATGGCAC
CCCCATCACCAGGTCGAGGGGCTCAACAAAGACCGTGAGGTCCACCTGCT
CCGCGACAGGCTAGAATCAACGGTGGTAGGTGGCCTGAACGCGTTCCCGC
CGATGCAGACCGCACCTGTTCATGGTGCTGTTTATCTGCTGTTCGAGTCC
CGACGTATTCCACCTTATTCTGACTGAATGGTGCTGTTTATCTGCTGTTC
GAGTCCCAACGTAGCCCACCTTATTATACTGACTGATGGTGCCCAAACTC
ATTTCTCTTGGAATAGATATGTCTCTGCTTGCTGCCCACCCCCATCTCTC
CACATCCGTGCATGTCTTATATGGCACCCCCATCACCAGGTCGAGGGGCT
CAACAAAGACCGTGAGGTCCACCTGCTCCGCGACAGGCTAGAATCAACGG
TGGTAGGTGGCCTGAACGCGTTCCCGCCGATGCAGACCGCACCTGTTCAT
GGTGCTGTTTATCTGCTGTTCGAGTCCCGACGTATTCCACCTTATTCTGA
CTGA
back to top