mRNA_L-elsbetiae_contig1806.5179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1806.5179.1
Unique NamemRNA_L-elsbetiae_contig1806.5179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1806.5179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1806contigL-elsbetiae_contig1806:672..1403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size496
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1806.5179.1prot_L-elsbetiae_contig1806.5179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1806 672..1225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.6538475-CDS-L-elsbetiae_contig1806:671..9091622815752.6538475-CDS-L-elsbetiae_contig1806:671..909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 672..909 -
1691683080.1096337-CDS-L-elsbetiae_contig1806:671..9091691683080.1096337-CDS-L-elsbetiae_contig1806:671..909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 672..909 -
1622815752.667348-CDS-L-elsbetiae_contig1806:1145..12251622815752.667348-CDS-L-elsbetiae_contig1806:1145..1225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 1146..1225 -
1691683080.1223333-CDS-L-elsbetiae_contig1806:1145..12251691683080.1223333-CDS-L-elsbetiae_contig1806:1145..1225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1806 1146..1225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.6845787-UTR-L-elsbetiae_contig1806:1225..14031622815752.6845787-UTR-L-elsbetiae_contig1806:1225..1403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1806 1226..1403 -
1691683080.132791-UTR-L-elsbetiae_contig1806:1225..14031691683080.132791-UTR-L-elsbetiae_contig1806:1225..1403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1806 1226..1403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1806.5179.1

>prot_L-elsbetiae_contig1806.5179.1 ID=prot_L-elsbetiae_contig1806.5179.1|Name=mRNA_L-elsbetiae_contig1806.5179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MLRRLGNRGSLSSKSVTLWTSAAVEPRMPGMRRAPPAAAAATPEKMAVIL
RLPPQQLQQPQVRHISSRSALDDGAAHFARGDDETTADSVRGSGVVPLDE
GSVDEN
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mRNA from alignment at L-elsbetiae_contig1806:672..1403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1806.5179.1 ID=mRNA_L-elsbetiae_contig1806.5179.1|Name=mRNA_L-elsbetiae_contig1806.5179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:672..1403- (Laminarionema elsbetiae ELsaHSoW15)
TTTTGGACTATTGGTGGGGGCATAAAGGAAAGGGGACGTAGTCAAAGCAC
CACCCCTGTTTACAGCTCTCCGCCTGACGTGCACCTTCTTCTTCTGTGTC
CTTCGGATTGTCGTGAACGCCTAGAGTACTTTGGATGTGCTGCTCGGCCT
GTTCCGCCGCACCCAAGAACACAAGAACATGTTGAGGAGGTTGGGCAACC
GCGGTTCACTATCGTCGAAGAGCGTCACGCTGTGGACGTCCGCAGCCGTC
GAGCCGAGGTGTGCAAAGCAAAAGTACAAGCTCGTTCCATCTACTTTTGT
CAGTGTACACGGCGGTACAGCAGTAGACCATGCCACCGCCGTCGTCGCAC
CCGCGCTGATTCATCAGGATACACCGCAGTGGACGCCATAGAAGAGGATT
AAGAAAATGCGACACATGTATATGCCATGGCACCAACAATTCCAACGTAC
GCCGAGCGCGACTCCATCATTTTTGTCGTTAATTGCTTTCGCAGGATGCC
GGGGATGAGGCGGGCACCGCCAGCTGCCGCAGCGGCGACACCAGAGAAGA
TGGCGGTTATCCTGAGACTGCCGCCGCAACAACTGCAGCAACCGCAAGTT
AGACACATCTCGTCGCGCTCCGCGTTGGACGATGGTGCTGCCCATTTCGC
AAGAGGGGATGATGAGACGACGGCGGATTCGGTGCGGGGCAGCGGCGTGG
TGCCCTTGGACGAAGGCAGCGTGGACGAGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1806:672..1403-

>mRNA_L-elsbetiae_contig1806.5179.1 ID=mRNA_L-elsbetiae_contig1806.5179.1|Name=mRNA_L-elsbetiae_contig1806.5179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1806:672..1403- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAGGAGGTTGGGCAACCGCGGTTCACTATCGTCGAAGAGCGTCAC
GCTGTGGACGTCCGCAGCCGTCGAGCCGAGATGTTGAGGAGGTTGGGCAA
CCGCGGTTCACTATCGTCGAAGAGCGTCACGCTGTGGACGTCCGCAGCCG
TCGAGCCGAGGATGCCGGGGATGAGGCGGGCACCGCCAGCTGCCGCAGCG
GCGACACCAGAGAAGATGGCGGTTATCCTGAGACTGCCGCCGCAACAACT
GCAGCAACCGCAAGTTAGACACATCTCGTCGCGCTCCGCGTTGGACGATG
GTGCTGCCCATTTCGCAAGAGGGGATGATGAGACGACGGCGGATTCGGTG
CGGGGCAGCGGCGTGGTGCCCTTGGACGAAGGCAGCGTGGACGAGAACGA
TGCCGGGGATGAGGCGGGCACCGCCAGCTGCCGCAGCGGCGACACCAGAG
AAGATGGCGGTTATCCTGAGACTGCCGCCGCAACAACTGCAGCAACCGCA
AGTTAGACACATCTCGTCGCGCTCCGCGTTGGACGATGGTGCTGCCCATT
TCGCAAGAGGGGATGATGAGACGACGGCGGATTCGGTGCGGGGCAGCGGC
GTGGTGCCCTTGGACGAAGGCAGCGTGGACGAGAAC
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