mRNA_L-elsbetiae_contig10522.512.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10522.512.1
Unique NamemRNA_L-elsbetiae_contig10522.512.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10522.512.1 vs. uniprot
Match: D7FN77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN77_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 3.390e-83
Identity = 134/183 (73.22%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 YFADEYRKSSLYWSSVCELMTNNAGSTQQVLAYVAAKLETDRVYTSSIYANADKVFGDKKGAAKLRHEKIRQAEQKAKLKGTTASVTEDSLVAGGAGRDPGALPQSGPVKAIWEMAEMDCRAARERDVLCHELEHENLLGAVKVMGKEMERRFKELSDEGNACLLSLANIDKRVGQAFLHLKE 549
            YFADEYRKSS+YWSS+C++M+ N G TQQVL+YVA KLE DR+ T++I+ NADKVFG+KKGA KLRH+KIR  EQKAK KG TAS+  + LVAGG G++    P +  VKAIWEMAEMDCRAAR RD LC ELEHE++LG VKVMGKEM+RRFKELS+EG ACLLSLANIDKRVGQAFLHLKE
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRINTAAIFVNADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKE---APTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSEEGTACLLSLANIDKRVGQAFLHLKE 206
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BLAST of mRNA_L-elsbetiae_contig10522.512.1 vs. uniprot
Match: A0A6H5L7U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U6_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 6.590e-82
Identity = 133/183 (72.68%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:    1 YFADEYRKSSLYWSSVCELMTNNAGSTQQVLAYVAAKLETDRVYTSSIYANADKVFGDKKGAAKLRHEKIRQAEQKAKLKGTTASVTEDSLVAGGAGRDPGALPQSGPVKAIWEMAEMDCRAARERDVLCHELEHENLLGAVKVMGKEMERRFKELSDEGNACLLSLANIDKRVGQAFLHLKE 549
            YFADEYRKSS+YWSS+C++M+ N G TQQVL+YVA KLE DRV T++I+ANADK+F +KKGA KLRH+KIR  EQKAK KG TAS+  + LVAGG  ++    P +  VKAIWEMAEMDCRAAR RD LC ELEHE++LG VKVMGKEM+RRFKELS+EG ACLLSLANIDKRVGQAFLHLKE
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSLNDGPTQQVLSYVAGKLEADRVNTAAIFANADKLFDEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPEKE---APTNNAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSEEGTACLLSLANIDKRVGQAFLHLKE 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10522.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN77_ECTSI3.390e-8373.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7U6_9PHAE6.590e-8272.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10522contigL-elsbetiae_contig10522:1235..6290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size549
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10522.512.1prot_L-elsbetiae_contig10522.512.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10522 1235..6290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.4829192-CDS-L-elsbetiae_contig10522:1234..13211622815276.4829192-CDS-L-elsbetiae_contig10522:1234..1321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 1235..1321 +
1691682811.7569776-CDS-L-elsbetiae_contig10522:1234..13211691682811.7569776-CDS-L-elsbetiae_contig10522:1234..1321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 1235..1321 +
1622815276.4983158-CDS-L-elsbetiae_contig10522:2431..25411622815276.4983158-CDS-L-elsbetiae_contig10522:2431..2541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 2432..2541 +
1691682811.7710087-CDS-L-elsbetiae_contig10522:2431..25411691682811.7710087-CDS-L-elsbetiae_contig10522:2431..2541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 2432..2541 +
1622815276.5096369-CDS-L-elsbetiae_contig10522:3415..35421622815276.5096369-CDS-L-elsbetiae_contig10522:3415..3542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 3416..3542 +
1691682811.784834-CDS-L-elsbetiae_contig10522:3415..35421691682811.784834-CDS-L-elsbetiae_contig10522:3415..3542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 3416..3542 +
1622815276.5196598-CDS-L-elsbetiae_contig10522:3891..39961622815276.5196598-CDS-L-elsbetiae_contig10522:3891..3996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 3892..3996 +
1691682811.7965407-CDS-L-elsbetiae_contig10522:3891..39961691682811.7965407-CDS-L-elsbetiae_contig10522:3891..3996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 3892..3996 +
1622815276.5280328-CDS-L-elsbetiae_contig10522:6170..62901622815276.5280328-CDS-L-elsbetiae_contig10522:6170..6290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 6171..6290 +
1691682811.8045087-CDS-L-elsbetiae_contig10522:6170..62901691682811.8045087-CDS-L-elsbetiae_contig10522:6170..6290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10522 6171..6290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10522.512.1

>prot_L-elsbetiae_contig10522.512.1 ID=prot_L-elsbetiae_contig10522.512.1|Name=mRNA_L-elsbetiae_contig10522.512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
YFADEYRKSSLYWSSVCELMTNNAGSTQQVLAYVAAKLETDRVYTSSIYA
NADKVFGDKKGAAKLRHEKIRQAEQKAKLKGTTASVTEDSLVAGGAGRDP
GALPQSGPVKAIWEMAEMDCRAARERDVLCHELEHENLLGAVKVMGKEME
RRFKELSDEGNACLLSLANIDKRVGQAFLHLKE
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mRNA from alignment at L-elsbetiae_contig10522:1235..6290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10522.512.1 ID=mRNA_L-elsbetiae_contig10522.512.1|Name=mRNA_L-elsbetiae_contig10522.512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5056bp|location=Sequence derived from alignment at L-elsbetiae_contig10522:1235..6290+ (Laminarionema elsbetiae ELsaHSoW15)
TACTTTGCCGATGAGTACCGCAAGTCCTCCCTCTACTGGTCCAGCGTGTG
CGAGCTTATGACCAACAACGCGGGGTCCACTCAGCAGGTGCGGTGTTGTC
CTTCTGCCGCTGACTCGCTCCGCTCTGTGCTCGGTGTTCTCTTCTTCTGG
GAGGGTCGTCTTTGTTTCGGGAACACGACTCCTCCACTATTTTCCATTCC
GGGGGGTGGAGGCCCTTTTTGAAAAAATTGAAAATAAATTAAATCAGAGA
CGGTTCGGTGCTCTGGCAAGATGTTAAGGCGGGAACCAACCTCCCTCCCC
ACACAAGTAACCGCGGTCTCTGTGTGTGGTGAATTAACCATCAACGCCGG
ACCCACCAAGCAGCAGAGGTGCGATGTTGCTTGTCCTTCTGCCGCTCACA
CACTCACTCGCTCCGCTCTGCGCTTGTGGCGTTGTTCTTCTTGCGGGGTG
GGGGTCGTGTTTGGTTTGGAGCGGACGCGTGTCTTCCACACTCTTGGTCT
CCACCATTTCCATTCCGGGGGGTCGAGCCCTCTTTTGAAAATGAACCAGA
GAATCAAGCGGAAACCTTCCCCACACAAGTAACCGCGTCCCTTCTTGGTT
TGAAAATAGAGAAAAGACAACCGACCCCCTCCGCCGCCTCTCTCCTGGAA
ACCCCTGCGTAGTCTACGTAGATGGCGATCCCCGCCGCCGTCCGTTGAGC
GACCTCGACGAGCAACAACCGTTCTTTGCGGTGCCAAAGCCATCTTTATT
TGTTTGGCGGTTGAGGATGGTTTGGATTTTGCCCCCGGCGAGGCGATCTC
TCCTTGTCGTTACATCTTGTACGGAGAGCACCCATCAGTAGTAGTATACC
GTAGGTGACGTAAGATAAGACACCCCCTGGACCGATATTGAAAGCTTGGT
TACTCCGCAACGAATACGATTTCAACCACAAACGCCACATTTTCGGAAAG
CTCTCGACGAGATCTTTCCAACGCCTCCCTTTTCGGGACTGACGCTGCGC
TTGCTGTGGAGCATTTGAGCTTTGGAAATCGGTCCAGGGGGTGTCTTATC
TTATGTCACCTACGGTAGTATACGTCGTAAATACCGTAGGTGACATGGGC
ATGTGTGTTCGCTGCTGCTATGATCGAAATTAATGAATTTAATTTGGTTT
AATTGCGTTGGATTGGATTGGACTGGATTGGCAATGAACGGCCGCAGGTG
CTGGCGTACGTCGCGGCCAAGCTGGAGACCGACCGCGTGTACACGTCCTC
CATCTACGCCAACGCCGACAAGGTGTTCGGGGACAAGAAGGGCGCCGCCA
AGCTAAGGTGCGCCTCGCGCTCGCGCCTCCTCTATACTGTACCCCGACCT
GTCCTGTCCCTGTCTTGTCTTGTGTCCAGTCCAGTAGTCTTACATACGCA
GGGTTTTCATCTTTTCATCTTCAGCAGCTAACATATGAGACAAAGTATTG
AAACCGGGAGAGGGGGGTCGGTGGTTGGGGTTAGGGATAGGGTTAGGGTT
AGGAATATGCCTACGGAAACCCCGTCTCTATTGTTTCGTTGATATAATTA
TATTTCTAAAACTTTATTTCTTCGTCAAGGCGGAGTACTGAACCGTGGTC
ACACAGAAGGGGCTCCTTTCCCCGAGGCCCATACTTGTATCGCTCTGGGT
GGGTGGTGTGGTGTGCGGGAGGGATGGTTCAATACTATGGTGTGCGATTC
CGGATATGTACGTATGGTACATTAGAGTGTTTGAAAAATGCGGGGGGTGT
CGTGGCGGTTTACGACGCACGCCTAAAAACCGCCTTCACGCCCAGCCTTA
ACCCACGCCCCCCCGCGCGCGCGCCATACGCGGGCCCCCCGTCCCTCCGC
GCCAAGCGTGGAGATACGTGATGACCCGCAGCTCGGATCGAGATTTACCC
ACCCTTGTACATGGGCACACACACACAAAGTAGGTCGGTCTCCCCCGCTA
AAGGAGCAGTCCTTCTTCGCCCAACTCACTTCCTCCCATTCACCGTGAAT
TTTGCGCTTCTCTGCATGTCCCTTTCGTCTTTCTTCCCCTTGACCTTCCA
GCCCCCCTCCCCAGTCCCCCCTCCCAAGAAGCAAAACACCTAGTATTCGA
AAAGTGTAAACCCCACCACCATCCGCACCTATTGAACCCCCCCTCCCCCG
CCCCCGCCCCCCCCTTCTCTGCACCACACAGGCACGAGAAGATTCGTCAA
GCGGAGCAGAAAGCCAAGCTCAAAGGCACGACCGCGTCCGTCACCGAGGA
CAGCCTGGTGGCAGGGGGCGCCGGGCGAGATCCGGGGGCTCTGCCGCAGA
GTGGCCCCGTGAGTTGATTGAAGCAGCACCTATATATGACCTGCTACTGT
GATTCACGTGCGCGTTTTTGGTTTGTCGTCCTGTTTGGGGGGGGGAGGGG
GGGAGGCTCCGTGGGGTTGGTTGTAAAATGCATGTTAAGTAGCGTGGTGT
TCGGGCATCGAGAGAGATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGGGAGAAAAAGAGAGAGAGAAGTGAGCAC
CTGAAGCAGCGGGGACGTTATTCCTGGCGTGTCAGTTTGGCTCTGCGCCA
AATTCGATCCCCCTTTTCACAACACGCAACCCTCCAATGGGCGGCGTCTC
GCTCCAGGTCAAGGCCATCTGGGAGATGGCGGAGATGGACTGCCGTGCGG
CGCGTGAACGCGACGTACTGTGCCACGAGCTGGAGCACGAGAACCTGCTC
GGTGCAGTCAAGGTCAGTCTCCCACTATTAAGCACTTCGTAGTAAGTAAG
GTCAGTCTCCCAGTATTGTGTACGTAGTAAATTAGGCCAGTCTCGCAAAT
ATTTTAGTACTCCAAATAAATAATGTCGTAGTAAATAAGGCCAGTCTCCC
ACTATTATAGTACGAAGAAGTAGGAAATAGTAGAAATATTATTTCAACTG
GACCGCCTTCGCGGAGAAATTAGCTTTTTTTATTCATAGTATTATTTCAA
CTGGACCGCCTTCGCGAAGAAATTAGCTTTGTTATTCATCCACCAGGAAA
GTAGAGAGAGTGGCCCCGTAACCGTAGCCGTAGCCCTAGCCGTATGTAGG
CCAAACCACCGATCCCCTTTCCAGGTTCTTCGGTGCTCGGGAATCTGCCA
ACGTTGGCAGGAGGGAAACACCTGCCAACAACGTTGGGGTTAGGGTTAGG
GTTTAGGGTTGGGTTAGGCCGGTTTAGGGTTGAGGGCTGGAAACTGACTA
GGTTAAGGGCTGGAAACTCTGCGTTCTTCCTTCTGCATGAAAGACGCGGC
TACCTCCAAGAACAATGAACAATGTTGGAACAGTCTTGTGGCAGGTGTTT
CCCTCCTCCTGCCAACGTTGGCAGATTCCCGACCGCCGCAGGTTCTTATA
CTTCATCCCGTATGTGTTGTCTATGAATACTTTGAAGCACTTTTTAGGGC
AATAGGTAAGTTGTCCTGTGACCAAAGCCGCAAGAACGGATACCCTTGTT
TGAAAGTTTGCTTTTGCCAAATATCAGATACGAGCTTGAAAAGGAGAACC
AACCTGCTGGGTGCACAGTCAAGTTCGTTCACGGCCATCACTTGAGAATC
TTCGTACATCACTTGAGAATCTTCGTGTACCGAATACCAGATGTTTAGCT
GTATGTGGCAGCAGAACATGCTTGGTACATGCAGTCAAAGGCCACTCATT
ATTTATTGATATGGTATGTAATATTATCTCACGGATCGCCATTGTTTGTT
TTTTTTCTTGCACAAATGTCACATAGATATGTACAAACTTGCTACGCAGC
GCCCTAGAAATGGTGCCCTGCTCTTCCAAATTTGCTCGGACCCTCGTATC
CGCAAGAAAAAAAAACAAGATTTTTTTTTTTATGTTTTTTCTTGGGAAAA
GGACGCAACATGTGTGGCTATCCCGCAAGAAAAAAAAAAGAAGTTTATTT
TTTGTTTTTTCTTGGGAAAACGACGCAACAGGGTATTTTTATACACCCTG
GCAGAACCACGACTAGCTGGGCACCCCTTTCCACAGACATTACACACGCA
TTGCTGTTTGGAGAGCGCCGCCATTGACCCGGTTCTGGCGCCGTTCGCCC
ATGGATATACCCTGCTGCGTCTCTCCTCGTCCGAGCGCTGGTAAACGTGT
GGGCATCACAATTTAGATGCGGACGAAACAAATTTATACCGTAGGTGACA
CAAGATACCACACCCCCCTGGGTAGATTTTCAAAGCTCAATTCCTCCTCC
CCCAGCAAGAAGAGTGAGAGTGCCAGTGCCAAAAAGGGTATATAGCGTTG
GAAATATCTACTCGAGAGGGCTGTCCGAAAATGTTTCGTTTGGTGCTGGC
ACCTTCGTTACGGAGTAATGGAGCTCTAAAAGTCGGTCCAGGGGGTGTGG
TATCTTGTGTCACCTACGGTATGTATTGTCCTCCCACTATCGGCTATTCG
TCGTCTGCCCTACTGGCCCCCTTCCTCCACTACGACTAGCTAGACGACCC
AACCTGGGCCACGCAGGAGCCCCCCCCCCCCCTCTTGCGGTGCCTGTCTG
TCGTGTTTTTATCGCGAGAAGGCAGGGTTCAGCACTCCCCACCTATTATG
CACCACTGCTGCGTCTACATGTTGTCCACATCTAAGTACCGATTTTATGT
TCAAACATTCGCGACGTTTTCGAAACACGACCAACCCTGCATAAATTTCA
CGCCCACATACATACTACATGCATGCACACATACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGGCCAGGGCAGCGGAGGGGGGGCACAAAGGGCCCC
GCGCGAGGGCCAAGGCGGGACCCCCCCGGCGNNNNNNNNNNCGCTTTCCC
CACACCCCACCCCCCCCACCCATTCCCCCCCCCCCCCCCCAACCCCCCCA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAAGGTGATGGGCAAGGA
GATGGAACGGCGCTTCAAGGAGCTCTCGGATGAGGGCAATGCGTGCCTGC
TCAGCCTGGCGAACATCGACAAGCGCGTCGGCCAGGCCTTCCTCCACCTC
AAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10522:1235..6290+

>mRNA_L-elsbetiae_contig10522.512.1 ID=mRNA_L-elsbetiae_contig10522.512.1|Name=mRNA_L-elsbetiae_contig10522.512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig10522:1235..6290+ (Laminarionema elsbetiae ELsaHSoW15)
TACTTTGCCGATGAGTACCGCAAGTCCTCCCTCTACTGGTCCAGCGTGTG
CGAGCTTATGACCAACAACGCGGGGTCCACTCAGCAGTACTTTGCCGATG
AGTACCGCAAGTCCTCCCTCTACTGGTCCAGCGTGTGCGAGCTTATGACC
AACAACGCGGGGTCCACTCAGCAGGTGCTGGCGTACGTCGCGGCCAAGCT
GGAGACCGACCGCGTGTACACGTCCTCCATCTACGCCAACGCCGACAAGG
TGTTCGGGGACAAGAAGGGCGCCGCCAAGCTAAGGTGCTGGCGTACGTCG
CGGCCAAGCTGGAGACCGACCGCGTGTACACGTCCTCCATCTACGCCAAC
GCCGACAAGGTGTTCGGGGACAAGAAGGGCGCCGCCAAGCTAAGGCACGA
GAAGATTCGTCAAGCGGAGCAGAAAGCCAAGCTCAAAGGCACGACCGCGT
CCGTCACCGAGGACAGCCTGGTGGCAGGGGGCGCCGGGCGAGATCCGGGG
GCTCTGCCGCAGAGTGGCCCCGCACGAGAAGATTCGTCAAGCGGAGCAGA
AAGCCAAGCTCAAAGGCACGACCGCGTCCGTCACCGAGGACAGCCTGGTG
GCAGGGGGCGCCGGGCGAGATCCGGGGGCTCTGCCGCAGAGTGGCCCCGT
CAAGGCCATCTGGGAGATGGCGGAGATGGACTGCCGTGCGGCGCGTGAAC
GCGACGTACTGTGCCACGAGCTGGAGCACGAGAACCTGCTCGGTGCAGTC
AAGGTCAAGGCCATCTGGGAGATGGCGGAGATGGACTGCCGTGCGGCGCG
TGAACGCGACGTACTGTGCCACGAGCTGGAGCACGAGAACCTGCTCGGTG
CAGTCAAGGTGATGGGCAAGGAGATGGAACGGCGCTTCAAGGAGCTCTCG
GATGAGGGCAATGCGTGCCTGCTCAGCCTGGCGAACATCGACAAGCGCGT
CGGCCAGGCCTTCCTCCACCTCAAGGAGGTGATGGGCAAGGAGATGGAAC
GGCGCTTCAAGGAGCTCTCGGATGAGGGCAATGCGTGCCTGCTCAGCCTG
GCGAACATCGACAAGCGCGTCGGCCAGGCCTTCCTCCACCTCAAGGAG
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