mRNA_L-elsbetiae_contig1788.5101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1788.5101.1
Unique NamemRNA_L-elsbetiae_contig1788.5101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1788.5101.1 vs. uniprot
Match: D8LLP9_ECTSI (Zinc binding dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.270e-6
Identity = 34/70 (48.57%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   70 LARRSLSWFSTSPSIQARRWLSACRVFADGSIRVENDDDRPGATTSPPGPGQVAVTLRSAPCTPADLRTL 279
            L RR L    T P    RRWL     FA+G        D     T+PPGPGQVAV L +APCTPADLR +
Sbjct:    7 LLRRILHLRLTQP----RRWLGTRVRFAEGGGCSVEHGDGDDDCTAPPGPGQVAVKLLAAPCTPADLRAV 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1788.5101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLP9_ECTSI2.270e-648.57Zinc binding dehydrogenase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1788contigL-elsbetiae_contig1788:10517..11339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1788.5101.1prot_L-elsbetiae_contig1788.5101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1788 10517..11185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.7438247-CDS-L-elsbetiae_contig1788:10516..107401622815744.7438247-CDS-L-elsbetiae_contig1788:10516..10740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 10517..10740 -
1691683074.7548885-CDS-L-elsbetiae_contig1788:10516..107401691683074.7548885-CDS-L-elsbetiae_contig1788:10516..10740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 10517..10740 -
1622815744.7566564-CDS-L-elsbetiae_contig1788:11172..111851622815744.7566564-CDS-L-elsbetiae_contig1788:11172..11185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 11173..11185 -
1691683074.768343-CDS-L-elsbetiae_contig1788:11172..111851691683074.768343-CDS-L-elsbetiae_contig1788:11172..11185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1788 11173..11185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.769067-UTR-L-elsbetiae_contig1788:11185..113391622815744.769067-UTR-L-elsbetiae_contig1788:11185..11339Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 11186..11339 -
1691683074.7784796-UTR-L-elsbetiae_contig1788:11185..113391691683074.7784796-UTR-L-elsbetiae_contig1788:11185..11339Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1788 11186..11339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1788.5101.1

>prot_L-elsbetiae_contig1788.5101.1 ID=prot_L-elsbetiae_contig1788.5101.1|Name=mRNA_L-elsbetiae_contig1788.5101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MAQSGWRTTTIDPVQLPPLQARAKSPLRCARPRARRRTCAHSAAPSAPRH
QPNPNPNPSPKRRHSSHHPRHRRRRPRLL
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mRNA from alignment at L-elsbetiae_contig1788:10517..11339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1788.5101.1 ID=mRNA_L-elsbetiae_contig1788.5101.1|Name=mRNA_L-elsbetiae_contig1788.5101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=823bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:10517..11339- (Laminarionema elsbetiae ELsaHSoW15)
GGTATGTCCCAGCACAGCACGGTGCCCCCACCCTGCGGTACATATGGCGG
GTCAAAACCCATGATCATGCTGGCAAGGAGATCTCTTTCGTGGTTTTCGA
CTTCGCCGTCGATCCAGGCGCGTCGTTGGCTGAGCGCATGCCGCGTCTTC
GCCGATGGCTCAATCAGGTAACTTGCTATTTTGCCTCATCTCCGTAGAAC
CTTTGTGCCTCGATCACGACACTCTCCCGCACAAGACTTGAGGGCTGATC
GAACACGGCCCCTTCTCTAGCACGGATATGAAGTTCCAATACGCTGGAAC
TTGCGCTCTCTATTACGCTGCAAATGTTCAACGGGTTGATGTGCTCAAGT
CTGTCGTCCATGCACCGCGGTGTGGTCGCGAAGCCTGTATCTATAGATAT
CTAGAGATATGTTCCTTGCCGCACCAAATTCAAAAGTACTCAGCGGTTCC
ATGTAGAACACAACAGCCATTTTTCTACCAAGTATGAAGCTCCTGGATGG
CCTTCAGCGCATTCCAGCCCCTGGGCGGCGCATCGTGCCCCACGCGGCGA
GTAACACCCCCCGCCGCCGCCGCTGCTGACCCACATCCACGATCGACAGG
GTGGAGAACGACGACGATCGACCCGGTGCAACTACCTCCCCTCCAGGCCC
GGGCCAAGTCGCCGTTACGCTGCGCTCGGCCCCGTGCACGCCGGCGGACC
TGCGCACACTCGGCGGCCCCGTCGGCGCCACGGCACCAACCGAATCCGAA
TCCGAACCCGAGCCCGAAACGCCGGCACTCAAGCCACCATCCACGGCACC
GCCGCCGCCGCCCTCGCCTCCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1788:10517..11339-

>mRNA_L-elsbetiae_contig1788.5101.1 ID=mRNA_L-elsbetiae_contig1788.5101.1|Name=mRNA_L-elsbetiae_contig1788.5101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig1788:10517..11339- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCAATCAGATGGCTCAATCAGGGTGGAGAACGACGACGATCGACC
CGGTGCAACTACCTCCCCTCCAGGCCCGGGCCAAGTCGCCGTTACGCTGC
GCTCGGCCCCGTGCACGCCGGCGGACCTGCGCACACTCGGCGGCCCCGTC
GGCGCCACGGCACCAACCGAATCCGAATCCGAACCCGAGCCCGAAACGCC
GGCACTCAAGCCACCATCCACGGCACCGCCGCCGCCGCCCTCGCCTCCTA
GGTGGAGAACGACGACGATCGACCCGGTGCAACTACCTCCCCTCCAGGCC
CGGGCCAAGTCGCCGTTACGCTGCGCTCGGCCCCGTGCACGCCGGCGGAC
CTGCGCACACTCGGCGGCCCCGTCGGCGCCACGGCACCAACCGAATCCGA
ATCCGAACCCGAGCCCGAAACGCCGGCACTCAAGCCACCATCCACGGCAC
CGCCGCCGCCGCCCTCGCCTCCTA
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