mRNA_L-elsbetiae_contig17869.5092.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17869.5092.1
Unique NamemRNA_L-elsbetiae_contig17869.5092.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.660e-10
Identity = 29/47 (61.70%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  121 VQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQSLVAT 261
            ++ +++NS+DAGATSVE+K+DLP YR+++ DNG+GIPAE L+SL AT
Sbjct:   40 LRAVVSNSIDAGATSVEVKVDLPSYRITVVDNGRGIPAETLRSLTAT 86          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: A7RP06_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RP06_NEMVE)

HSP 1 Score: 63.9 bits (154), Expect = 5.130e-9
Identity = 25/68 (36.76%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   49 VEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQSL 252
            +  ++  I + +R+G  +ST++QA+ EL+ N++DAGA+ + + +D+P +R+ +SDNG GI  + L+ L
Sbjct:    2 IRHLDTGIRSHLRSGVAISTLTQAIDELVTNALDAGASCINVHVDIPSFRVQVSDNGSGITKDNLEIL 69          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: A0A433TN64_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TN64_ELYCH)

HSP 1 Score: 62.8 bits (151), Expect = 1.890e-8
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   82 VRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQSL 252
            +R G  +++ +QAV+EL+ NS+DAGATSV +++DLP +++ + DNG GI  E+  SL
Sbjct:   39 IRTGVALTSFAQAVEELVLNSIDAGATSVAVRIDLPYFKIQVVDNGSGISFEQFSSL 95          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: UPI001ED8778E (uncharacterized protein LOC124167898 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8778E)

HSP 1 Score: 62.4 bits (150), Expect = 2.540e-8
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   49 VEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKL 243
            ++++ E + + +R+G  +S+ +Q V EL+ NS+DAGATS+ I LD+  ++L + DNG GI  E L
Sbjct:    3 IQKLPEEVRSAIRSGIAISSTAQCVTELVLNSLDAGATSITILLDISHFKLEVDDNGSGIVLEDL 67          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: A0A197KFA2_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KFA2_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 3.290e-8
Identity = 30/67 (44.78%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   40 MAEVEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGI-PAE 237
            MA ++ +  S+++ +RA  VV+++ Q + ELI NS+DA ATS+E+K+D+  + L +SDNG GI PA+
Sbjct:    1 MASIQPLASSVSDELRASLVVNSLEQCISELIQNSIDANATSIEVKVDVAGHSLQVSDNGDGILPAD 67          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: UPI001CF5ECAC (DNA mismatch repair protein Mlh3-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF5ECAC)

HSP 1 Score: 62.0 bits (149), Expect = 3.390e-8
Identity = 23/66 (34.85%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   49 VEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQ 246
            +  ++E + + +R+G  ++ ++  V+EL+ NS+DA +TS+ +++D+P Y++ +SDNG GI  E L+
Sbjct:   20 IRPLQEDVRSNLRSGVAITNLTHCVEELVLNSLDADSTSITVRIDVPNYKIQVSDNGNGIVFEDLK 85          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: UPI0009E319D1 (uncharacterized protein LOC110052630 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E319D1)

HSP 1 Score: 62.0 bits (149), Expect = 3.520e-8
Identity = 24/68 (35.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   49 VEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQSL 252
            +  ++E + + +R+G  ++ ++Q V+ELI NS+DA A+ + +++D+P +++ +SDNG GI  E L+S+
Sbjct:    2 IRPLQEEVRSHLRSGVAITNLTQCVEELILNSLDAEASCITVRIDIPNFKIQVSDNGNGIAFEDLKSV 69          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: UPI001895F830 (DNA mismatch repair protein Mlh3-like isoform X1 n=2 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895F830)

HSP 1 Score: 61.6 bits (148), Expect = 4.660e-8
Identity = 25/68 (36.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   46 EVEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQS 249
            E+ ++   + + +R+G  + +++  ++EL+ N++DAGAT V ++L+LP YR+ + DNG GIP E+L++
Sbjct:    2 ELHRLPTDVVSKLRSGVAIVSVAHCMEELVLNALDAGATCVAVRLNLPYYRVQVVDNGHGIPREQLEN 69          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: A0A3Q2QWM0_FUNHE (HATPase_c domain-containing protein n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QWM0_FUNHE)

HSP 1 Score: 57.8 bits (138), Expect = 6.480e-8
Identity = 23/55 (41.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   82 VRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQ 246
            +R+G  + ++ Q V+EL+ NS+DAGAT V +++D+  +++ + DNG GIPAE ++
Sbjct:   13 LRSGVAIPSLQQCVEELLLNSIDAGATCVGVRIDMEAFKVQVIDNGSGIPAEDME 67          
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Match: UPI000BA7F02B (uncharacterized protein LOC106477624 isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F02B)

HSP 1 Score: 60.8 bits (146), Expect = 8.760e-8
Identity = 26/66 (39.39%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   49 VEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLDLPRYRLSISDNGKGIPAEKLQ 246
            V+ +   + + +R+   V+++   V+EL+ NS+DAGAT V ++LDLP +++ + DNG+GIP E+L+
Sbjct:    3 VQTLPAEVISKLRSDVAVTSVCHCVEELVLNSLDAGATCVAVRLDLPYFKVQVVDNGRGIPPEQLE 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17869.5092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D8_ECTSI4.660e-1061.70MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A7RP06_NEMVE5.130e-936.76Predicted protein (Fragment) n=3 Tax=Nematostella ... [more]
A0A433TN64_ELYCH1.890e-847.37Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
UPI001ED8778E2.540e-841.54uncharacterized protein LOC124167898 n=1 Tax=Ischn... [more]
A0A197KFA2_9FUNG3.290e-844.78Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
UPI001CF5ECAC3.390e-834.85DNA mismatch repair protein Mlh3-like isoform X1 n... [more]
UPI0009E319D13.520e-835.29uncharacterized protein LOC110052630 n=1 Tax=Orbic... [more]
UPI001895F8304.660e-836.76DNA mismatch repair protein Mlh3-like isoform X1 n... [more]
A0A3Q2QWM0_FUNHE6.480e-841.82HATPase_c domain-containing protein n=1 Tax=Fundul... [more]
UPI000BA7F02B8.760e-839.39uncharacterized protein LOC106477624 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17869contigL-elsbetiae_contig17869:2324..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog2880.D7G9D8
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1977@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Ec32 ortholog descriptionMutL protein homolog 3
Ec32 orthologEc-28_000540.1
Exons2
Model size481
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17869.5092.1prot_L-elsbetiae_contig17869.5092.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17869 2357..2889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3023698-UTR-L-elsbetiae_contig17869:2323..23561622815744.3023698-UTR-L-elsbetiae_contig17869:2323..2356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17869 2324..2356 +
1691683074.460341-UTR-L-elsbetiae_contig17869:2323..23561691683074.460341-UTR-L-elsbetiae_contig17869:2323..2356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17869 2324..2356 +
1622815744.339048-UTR-L-elsbetiae_contig17869:2889..30371622815744.339048-UTR-L-elsbetiae_contig17869:2889..3037Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17869 2890..3037 +
1691683074.4875953-UTR-L-elsbetiae_contig17869:2889..30371691683074.4875953-UTR-L-elsbetiae_contig17869:2889..3037Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17869 2890..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.315739-CDS-L-elsbetiae_contig17869:2356..24531622815744.315739-CDS-L-elsbetiae_contig17869:2356..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17869 2357..2453 +
1691683074.4709213-CDS-L-elsbetiae_contig17869:2356..24531691683074.4709213-CDS-L-elsbetiae_contig17869:2356..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17869 2357..2453 +
1622815744.32885-CDS-L-elsbetiae_contig17869:2686..28891622815744.32885-CDS-L-elsbetiae_contig17869:2686..2889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17869 2687..2889 +
1691683074.4793081-CDS-L-elsbetiae_contig17869:2686..28891691683074.4793081-CDS-L-elsbetiae_contig17869:2686..2889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17869 2687..2889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17869.5092.1

>prot_L-elsbetiae_contig17869.5092.1 ID=prot_L-elsbetiae_contig17869.5092.1|Name=mRNA_L-elsbetiae_contig17869.5092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAMAEVEQVEESIANGVRAGAVVSTMSQAVQELIANSMDAGATSVEIKLD
LPRYRLSISDNGKGIPAEKLQSLVATAQGVKTVKVSLRNKCSHTPTPHP*
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mRNA from alignment at L-elsbetiae_contig17869:2324..3037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17869.5092.1 ID=mRNA_L-elsbetiae_contig17869.5092.1|Name=mRNA_L-elsbetiae_contig17869.5092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig17869:2324..3037+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGTCACGCTGACAGACGAGGAGCGTCGTGCATGGCTATGGCTGAGGT GGAGCAAGTGGAAGAAAGTATCGCCAATGGAGTTCGAGCTGGTGCGGTTG TCTCCACAATGTCCCAAGCTGTCCAAGAACGTGAGGACGCACTAGTCTAG CTGGGACAGATCTCCGTCAAGTTCCTGTCATGTGTACTCCCATCTACTTG TTACTTGTTGATGTATCTCATACCCCTGCTTTGAGATGTTCGCCGACTCG GCCTGTGTCCTGATACGGACTGTTGTGTGAAAACATTTGCTGAGGTAATT CTCTGGACTGCAGTTTGTACTGACTATCGACGCGTCCCTCCCTACTTAAC TTGCTCTTTCAAGTAATCGCAAACAGCATGGATGCCGGTGCGACCTCCGT GGAGATCAAATTGGATTTGCCCAGATATCGACTTTCCATTTCGGACAACG GCAAAGGCATCCCGGCAGAGAAGCTTCAATCACTCGTTGCGACAGCACAA GGTGTGAAAACTGTCAAAGTTTCACTTCGTAACAAGTGCTCTCACACGCC AACTCCACACCCGTAGCTATTTCAGACTAGATATCTAATCTAGCCTACAA AAGCTATGTACAAGAGTCTCCGGACGTGGAGGGCCTATCGCCCCCCCCGT CCTACGGGTTACTGTGAAAGGGATGAGGTGTTGGTGCCGGGGTAGGCTGA ATACCAAGGGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17869:2324..3037+

>mRNA_L-elsbetiae_contig17869.5092.1 ID=mRNA_L-elsbetiae_contig17869.5092.1|Name=mRNA_L-elsbetiae_contig17869.5092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig17869:2324..3037+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTATGGCTGAGGTGGAGCAAGTGGAAGAAAGTATCGCCAATGGAGT
TCGAGCTGGTGCGGTTGTCTCCACAATGTCCCAAGCTGTCCAAGAACATG
GCTATGGCTGAGGTGGAGCAAGTGGAAGAAAGTATCGCCAATGGAGTTCG
AGCTGGTGCGGTTGTCTCCACAATGTCCCAAGCTGTCCAAGAACTAATCG
CAAACAGCATGGATGCCGGTGCGACCTCCGTGGAGATCAAATTGGATTTG
CCCAGATATCGACTTTCCATTTCGGACAACGGCAAAGGCATCCCGGCAGA
GAAGCTTCAATCACTCGTTGCGACAGCACAAGGTGTGAAAACTGTCAAAG
TTTCACTTCGTAACAAGTGCTCTCACACGCCAACTCCACACCCGTAGTAA
TCGCAAACAGCATGGATGCCGGTGCGACCTCCGTGGAGATCAAATTGGAT
TTGCCCAGATATCGACTTTCCATTTCGGACAACGGCAAAGGCATCCCGGC
AGAGAAGCTTCAATCACTCGTTGCGACAGCACAAGGTGTGAAAACTGTCA
AAGTTTCACTTCGTAACAAGTGCTCTCACACGCCAACTCCACACCCGTAG
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